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Complete genome sequence of Phobos: a novel bacteriophage with unusual genomic features that infects Pseudomonas syringae.
Archives of Virology ( IF 2.5 ) Pub Date : 2020-04-04 , DOI: 10.1007/s00705-020-04618-2
Luis Amarillas 1 , Mitzi Estrada-Acosta 2 , Ruben G León-Chan 1 , Carlos López-Orona 2 , Luis Lightbourn 1
Affiliation  

The GenBank database contains over 2580 complete genome sequences from bacteriophages. However, limited reports are available concerning phages can that lyse members of Pseudomonas syringae, although this is a widespread bacterial species that can infect almost 200 plant species. In the present study, we isolated and characterized a new Siphoviridae phage, named "Pseudomonas phage vB_PsyS_Phobos" (for brevity, referred to here as Phobos). To our knowledge, this is one of the first genome sequences reported for a phage with lytic activity against P. syringae pv. syringae. The genome of Phobos is dsDNA of 56,734 bp with a GC content of 63.3%, containing 65 ORFs. Genome analysis revealed that Phobos is a novel lytic phage with unique genomic features and low similarity to other phages, suggesting that Phobos represents a new phage genus. Genome sequencing did not reveal sequences with significant similarity to known virulence factors, antibiotic resistance genes, potential immunoreactive allergens, or lysogeny-related proteins, suggesting suggests that phage Phobos is strictly lytic. Therefore, Phobos may be suitable for formulation as a biocontrol agent against P. syringae pv. syringae.

中文翻译:

Phobos的完整基因组序列:一种新颖的噬菌体,具有异常的基因组特征,可感染丁香假单胞菌。

GenBank数据库包含来自噬菌体的2580多个完整基因组序列。然而,关于噬菌体可以溶解丁香假单胞菌的成员的报道很少,尽管这是一种广泛的细菌,可以感染近200种植物。在本研究中,我们分离并鉴定了一种新的名为假单胞菌噬菌体vB_PsyS_Phobos的幽门螺杆菌噬菌体(为简便起见,在这里称为Phobos)。据我们所知,这是报道的具有针对丁香假单胞菌pv的裂解活性的噬菌体的第一个基因组序列。丁香科。火卫一的基因组是56,734 bp的dsDNA,GC含量为63.3%,包含65个ORF。基因组分析表明,噬菌体是一种新颖的裂解噬菌体,具有独特的基因组特征,与其他噬菌体的相似性较低,这表明噬菌体代表了一种新的噬菌体。基因组测序未发现与已知毒力因子,抗生素抗性基因,潜在的免疫反应性变应原或溶原性相关蛋白具有显着相似性的序列,这表明噬菌体Phobos是严格裂解的。因此,Phobos可能适合用作抗丁香假单胞菌pv的生物防治剂。丁香科。
更新日期:2020-04-04
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