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grabseqs: simple downloading of reads and metadata from multiple next-generation sequencing data repositories.
Bioinformatics ( IF 4.4 ) Pub Date : 2020-03-10 , DOI: 10.1093/bioinformatics/btaa167
Louis J Taylor 1 , Arwa Abbas 2 , Frederic D Bushman 1
Affiliation  

High-throughput sequencing is a powerful technique for addressing biological questions. Grabseqs streamlines access to publicly available metagenomic data by providing a single, easy-to-use interface to download data and metadata from multiple repositories, including the Sequence Read Archive, the Metagenomics Rapid Annotation through Subsystems Technology server and iMicrobe. Users can download data and metadata in a standardized format from any number of samples or projects from a given repository with a single grabseqs command.

中文翻译:


grabseqs:从多个下一代测序数据存储库简单下载读数和元数据。



高通量测序是解决生物学问题的强大技术。 Grabseqs 通过提供一个易于使用的单一界面来从多个存储库(包括序列读取存档、通过子系统技术服务器和 iMicrobe 进行的宏基因组快速注释)下载数据和元数据,从而简化了对公开可用的宏基因组数据的访问。用户可以使用单个grabseqs命令从给定存储库中的任意数量的示例或项目中下载标准化格式的数据和元数据。
更新日期:2020-03-10
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