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grabseqs: simple downloading of reads and metadata from multiple next-generation sequencing data repositories.
Bioinformatics ( IF 5.8 ) Pub Date : 2020-03-10 , DOI: 10.1093/bioinformatics/btaa167
Louis J Taylor 1 , Arwa Abbas 2 , Frederic D Bushman 1
Affiliation  

High-throughput sequencing is a powerful technique for addressing biological questions. Grabseqs streamlines access to publicly available metagenomic data by providing a single, easy-to-use interface to download data and metadata from multiple repositories, including the Sequence Read Archive, the Metagenomics Rapid Annotation through Subsystems Technology server and iMicrobe. Users can download data and metadata in a standardized format from any number of samples or projects from a given repository with a single grabseqs command.

中文翻译:

grabseqs:从多个下一代测序数据存储库中轻松下载读数和元数据。

高通量测序是解决生物学问题的强大技术。Grabseqs通过提供一个简单易用的界面来从多个存储库下载数据和元数据,从而简化了对公开可用的宏基因组数据的访问,这些存储库包括Sequence Read Archive,通过Subsystems Technology服务器进行的Metagenomics快速注释和iMicrobe。用户可以使用一个grabseqs命令从给定存储库中的任何数量的样本或项目中,以标准化格式下载数据和元数据。
更新日期:2020-03-10
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