当前位置: X-MOL 学术Mol. Biochem. Parasitol. › 论文详情
Our official English website, www.x-mol.net, welcomes your feedback! (Note: you will need to create a separate account there.)
Molecular detection of Trichostrongylus species through PCR followed by high resolution melt analysis of ITS-2 rDNA sequences.
Molecular and Biochemical Parasitology ( IF 1.4 ) Pub Date : 2020-01-17 , DOI: 10.1016/j.molbiopara.2020.111260
Mohsen Arbabi 1 , Hossein Hooshyar 2 , Majid Lotfinia 3 , Mohamad Ali Bakhshi 2
Affiliation  

Polymerase chain reaction followed by high resolution melting (PCR-HRM) analysis is a simple, rapid and accurate method for molecular detection of various nematode species. The objective of the present study was, for the first time, to develop a PCR-HRM assay for the detection of various animal Trichostrongylus spp. A pair of primers targeting the ITS-2 rDNA region of the Trichostrongylus spp. was designed for the development of the HRM assay. DNA samples were extracted from 30 adult worms of Trichostrongylus spp., the ITS-2-rDNA region was amplified using PCR, and the resultant products were sequenced and characterized. Afterwards, the PCR-HRM analysis was conducted to detect and discriminate Trichostrongylus spp. Molecular sequence analysis revealed that 24, 4, and 1 of the samples were T. colubriformis, T. vitrinus and T. capricola, respectively. Results from PCR-HRM indicated that complete agreement was relatively found between speciation by HRM analysis and DNA sequencing for the detection of Trichostrongylus species. The PCR-HRM analysis method developed in the present study is fast and low-cost; the method can be comparable with other molecular detection techniques, representing a reliable tool for the identification of various species within the Trichostrongylus genus.



中文翻译:

通过PCR分子检测Trichostrongylus菌种,然后对ITS-2 rDNA序列进行高分辨率熔解分析。

聚合酶链反应后进行高分辨率熔解(PCR-HRM)分析是一种简单,快速,准确的分子检测各种线虫物种的方法。本研究的目的是首次开发一种PCR-HRM分析方法,用于检测各种动物的Trichostrongylus spp。靶向Trichostrongylus spp的ITS-2 rDNA区域的一对引物。设计用于开发HRM分析。从30种线虫的成虫中提取DNA样品,使用PCR扩增ITS-2-rDNA区域,并对所得产物进行测序和鉴定。之后,进行PCR-HRM分析以检测和区分毛圆线虫spp。分子序列分析表明,24,如图4所示,并且将样品的1是T.蛇形毛圆线虫T. vitrinusT. capricola,分别。PCR-HRM的结果表明,在通过HRM分析进行的物种形成和DNA测序中检测毛圆线虫物种方面,完全可以找到完全一致的协议。本研究开发的PCR-HRM分析方法快速,低成本。该方法可以与其他分子检测技术相提并论,代表了一种用于鉴定毛圆线虫属内各种物种的可靠工具。

更新日期:2020-01-17
down
wechat
bug