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genodive version 3.0: Easy-to-use software for the analysis of genetic data of diploids and polyploids.
Molecular Ecology Resources ( IF 5.5 ) Pub Date : 2020-02-14 , DOI: 10.1111/1755-0998.13145
Patrick G Meirmans 1
Affiliation  

genodive version 3.0 is a user‐friendly program for the analysis of population genetic data. This version presents a major update from the previous version and now offers a wide spectrum of different types of analyses. genodive has an intuitive graphical user interface that allows direct manipulation of the data through transformation, imputation of missing data, and exclusion and inclusion of individuals, population and/or loci. Furthermore, genodive seamlessly supports 15 different file formats for importing or exporting data from or to other programs. One major feature of genodive is that it supports both diploid and polyploid data, up to octaploidy (2n  = 8x ) for some analyses, but up to hexadecaploidy (2n  = 16x ) for other analyses. The different types of analyses offered by genodive include multiple statistics for estimating population differentiation (φ ST, F ST, F ʹST, G ST, G ʹST, G ʹʹST, D est, R ST, ρ ), analysis of molecular variance‐based K‐means clustering, Hardy–Weinberg equilibrium, hybrid index, population assignment, clone assignment, Mantel test, Spatial Autocorrelation, 23 ways of calculating genetic distances, and both principal components and principal coordinates analyses. A unique feature of genodive is that it can also open data sets with nongenetic variables, for example environmental data or geographical coordinates that can be included in the analysis. In addition, genodive makes it possible to run several external programs (lfmm , structure , instruct and vegan ) directly from its own user interface, avoiding the need for data reformatting and use of the command line. genodive is available for computers running Mac OS X 10.7 or higher and can be downloaded freely from: http://www.patrickmeirmans.com/software.

中文翻译:

genodive 3.0版:易于使用的软件,用于分析二倍体和多倍体的遗传数据。

genodive 3.0版是一种用于对群体遗传数据进行分析的用户友好型程序。此版本提供了对先前版本的重大更新,现在提供了各种不同类型的分析。genodive具有直观的图形用户界面,该界面允许通过转换,插补丢失的数据以及排除和包含个人,种群和/或基因座来直接操纵数据。此外,genodive无缝支持15种不同的文件格式,用于从其他程序导入数据或将数据导出到其他程序。genodive的主要特征之一是它支持二倍体和多倍体数据,最大八倍体(2 n  = 8 x)进行某些分析,但最多进行六倍体分析(2 n  = 16 x)。不同类型的所提供的分析genodive包括用于估计种群分化(多个统计φ ST˚F ST˚F ' STģ STģ ' STģ '' STd EST- [R STρ),分子方差分析基于K均值聚类,Hardy-Weinberg平衡,混合指数,种群分配,克隆分配,Mantel检验,空间自相关,23种计算遗传距离的方法以及主成分和主坐标分析。genodive的独特之在于它还可以打开具有非遗传变量的数据集,例如可以包含在分析中的环境数据或地理坐标。另外,genodive使直接从其自己的用户界面运行多个外部程序(lfmmstructureInstructionsvegan)成为可能,而无需重新格式化数据和使用命令行。遗传的 可用于运行Mac OS X 10.7或更高版本的计算机,并可从以下网站免费下载:http://www.patrickmeirmans.com/software。
更新日期:2020-02-14
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