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Analysis of the complete genome sequence of Brevibacterium frigoritolerans ZB201705 isolated from drought- and salt-stressed rhizosphere soil of maize
Annals of Microbiology ( IF 3 ) Pub Date : 2019-11-23 , DOI: 10.1007/s13213-019-01532-0
Chun Zhang , Xianglong Li , Longfei Yin , Cai Liu , Huawen Zou , Zhongyi Wu , Zhongbao Zhang

To analyze the complete genome sequence of the Brevibacterium frigoritolerans ZB201705, a Brevibacterium strain was isolated from the maize rhizosphere in drought- and salt-stressed soil, and the activity of the strain under simulated drought and high salt conditions was assessed. We used a combination of the PacBio RS and Illumina sequencing platforms to obtain the complete genome sequence of B. frigoritolerans ZB201705. The genome consists of 5,475,560 bp in a linear chromosome with no gaps, 4,391 protein-coding sequences, 39 ribosomal RNAs, and 81 transfer RNAs. The genome analysis revealed many putative gene clusters involved in defense mechanisms. In addition, an activity analysis of the strain under high-salt and simulated drought conditions helped clarify its potential tolerance to these abiotic stresses. Our data revealed the complete genome sequence of the new isolated strain, and showed that it produces many proteins involved in drought and salt stress responses, suggesting that B. frigoritolerans ZB201705 may be a potential factor to increase crop yield under abiotic stresses. The information provided here on the genome of B. frigoritolerans ZB201705 provides valuable insight into rhizobacteria-mediated plant salt and drought tolerance and rhizobacteria-based solutions for agriculture under abiotic stress.

中文翻译:

从干旱和盐胁迫的玉米根际土壤中分离到的短杆菌布鲁ZB201705全基因组序列分析

为了分析Frigoritolerans ZB201705短杆菌的完整基因组序列,从干旱和盐胁迫土壤中的玉米根际中分离了一个短杆菌菌株,并评估了该菌株在模拟干旱和高盐条件下的活性。我们使用了PacBio RS和Illumina测序平台的组合来获得B. frigoritolerans ZB201705的完整基因组序列。该基因组由无间隙线性染色体中的5,475,560 bp,4391个蛋白质编码序列,39个核糖体RNA和81个转移RNA组成。基因组分析揭示了许多推测的基因簇参与防御机制。此外,该菌株在高盐和模拟干旱条件下的活性分析有助于阐明其对这些非生物胁迫的潜在耐受性。我们的数据揭示了新分离菌株的完整基因组序列,并表明它产生许多参与干旱和盐胁迫响应的蛋白质,这表明在非生物胁迫下,棉铃虫BB201705可能是增加作物产量的潜在因素。此处提供的关于弗氏果糖双歧杆菌ZB201705基因组的信息为了解根瘤菌介导的植物盐和干旱耐受性以及非生物胁迫下基于根瘤菌的农业解决方案提供了宝贵的见解。
更新日期:2020-04-18
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