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Development of quantitative PCR assays for the detection and quantification of lake sturgeon ( Acipenser fulvescens ) environmental DNA
Conservation Genetics Resources ( IF 1.1 ) Pub Date : 2018-06-21 , DOI: 10.1007/s12686-018-1054-8
Michael E. Yusishen , Frances-Claire Eichorn , W. Gary Anderson , Margaret F. Docker

To assist in efforts to monitor the distribution and abundance of lake sturgeon Acipenser fulvescens, a species of conservation concern in Canada and the United States, we developed two quantitative PCR (qPCR) environmental DNA assays targeting the cytochrome c oxidase 1 (COI) and cytochrome b (cyt b) genes. Neither assay amplified DNA from the closely-related shortnose sturgeon Acipenser brevirostrum, but species-specificity should be tested further. In field and laboratory trials, results from the cyt b assay always corresponded with species presence; the COI assay occasionally yielded false positives. The cyt b assay also showed promise in estimating relative abundance; Ct value (the number of PCR cycles at which DNA detection exceeds the background level) decreased with density in both the field and lab.



中文翻译:

定量PCR分析方法的发展用于检测和定量湖泊urge(Acipenser fulvescens)环境DNA

为了协助监测加拿大和美国受保护物种species湖A鱼Acipenser fulvescens的分布和丰度,我们开发了两种针对细胞色素c氧化酶1(COI)和细胞色素的定量PCR(qPCR)环境DNA分析b(cyt b)基因。两种测定均未扩增出近亲短st st Acipenser brevirostrum的DNA ,但应进一步测试物种特异性。在野外和实验室试验中,cyt b测定的结果始终与物种的存在相对应。在COI分析偶尔产生误报。cyt b分析还显示出估计相对丰度的希望;Ç值(在该DNA检测超过背景水平的PCR循环的数量)与在现场和实验室都密度降低。

更新日期:2018-06-21
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