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Visual TreeCmp: Comprehensive Comparison of Phylogenetic Trees on the Web
Methods in Ecology and Evolution ( IF 6.3 ) Pub Date : 2020-02-24 , DOI: 10.1111/2041-210x.13358
Tomasz Goluch 1 , Damian Bogdanowicz 1 , Krzysztof Giaro 1
Affiliation  

  1. We present Visual TreeCmp—a package of applications for comparing phylogenetic tree sets.
  2. Visual TreeCmp includes a graphical web interface allowing the visualization of compared trees and command line application extended by comparison methods recently proposed in the literature.
  3. The phylogenetic tree similarity analysis in Visual TreeCmp can be performed using eighteen metrics, of which 11 are dedicated to rooted trees and seven to the unrooted ones. Additionally, in the case of different sets of labels, the compared trees can be pruned so that the sets are identical.
  4. The Visual TreeCmp is dedicated to people who need a universal and easy‐to‐use tool designed to compare arbitrary (not necessary binary) phylogenetic trees. An example of its use in a supertree accuracy analysis is described in section 3.
  5. The Visual TreeCmp package Web application is available at: (https://eti.pg.edu.pl/TreeCmp), and its source codes available under the GNU license can be reached through several repositories located at: (https://github.com/TreeCmp).


中文翻译:

Visual TreeCmp:Web上系统发生树的全面比较

  1. 我们介绍了Visual TreeCmp —一种用于比较系统进化树集的应用程序包。
  2. Visual TreeCmp包含一个图形化的Web界面,允许可视化已比较的树和通过​​最近文献中提出的比较方法扩展的命令行应用程序。
  3. Visual TreeCmp中的系统树相似性分析可以使用18个度量标准来执行,其中11个专用于有根的树,而7个专用于无根的树。另外,在标签不同的情况下,可以修剪比较的树,以使标签相同。
  4. 视觉TreeCmp是献给谁需要设计比较任意一个普遍和易于使用的工具(不是必须的二进制)进化树人。第3节中描述了其在超树准确性分析中的用法示例。
  5. 视觉TreeCmp包的Web应用程序,请访问:(https://eti.pg.edu.pl/TreeCmp),其在GNU许可证可用的源代码可以通过位于多个仓库来达到:(https://开头的github .com / TreeCmp)。
更新日期:2020-02-24
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