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RxnBLAST: molecular scaffold and reactive chemical environment feature extractor for biochemical reactions.
Bioinformatics ( IF 4.4 ) Pub Date : 2020-05-01 , DOI: 10.1093/bioinformatics/btaa036
Xingxiang Cheng 1 , Dandan Sun 1 , Dachuan Zhang 1 , Yu Tian 2, 3 , Shaozhen Ding 1 , Pengli Cai 1 , Qian-Nan Hu 1
Affiliation  

MOTIVATION Molecular scaffolds are useful in medicinal chemistry to describe, discuss and visualize series of chemical compounds, biochemical transformations and associated biological properties. RESULTS Here, we present RxnBLAST as a web-based tool for analyzing scaffold transformations and reactive chemical environment features in bioreactions. RxnBLAST extracts chemical features from bioreactions including atom-atom mapping, reaction centers, rules and functional groups to help understand chemical compositions and reaction patterns. Core-to-Core is proposed, which can be utilized in scaffold networks and for constructing a reaction space, as well as providing guidance for subsequent biosynthesis efforts. AVAILABILITY AND IMPLEMENTATION RxnBLAST is available at: http://design.rxnfinder.org/rxnblast/.

中文翻译:

RxnBLAST:用于生物化学反应的分子支架和反应化学环境特征提取器。

动机分子支架可用于药物化学中,以描述,讨论和可视化一系列化学化合物,生物化学转化和相关的生物学特性。结果在这里,我们介绍RxnBLAST作为基于Web的工具,用于分析生物反应中的支架转化和反应化学环境特征。RxnBLAST从生物反应中提取化学特征,包括原子-原子图,反应中心,规则和官能团,以帮助了解化学组成和反应模式。提出了核心对核心,可用于支架网络和构建反应空间,并为后续的生物合成工作提供指导。可用性和实现RxnBLAST可从以下网址获得:http://design.rxnfinder.org/rxnblast/。
更新日期:2020-01-17
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