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Identification of 15 New Bypassable Essential Genes of Fission Yeast.
Cell Structure and Function ( IF 2.0 ) Pub Date : 2019-08-31 , DOI: 10.1247/csf.19025
Aoi Takeda 1 , Shigeaki Saitoh 2 , Hiroyuki Ohkura 3 , Kenneth E Sawin 3 , Gohta Goshima 1
Affiliation  

Every organism has a different set of genes essential for its viability. This indicates that an organism can become tolerant to the loss of an essential gene under certain circumstances during evolution, via the manifestation of 'masked' alternative mechanisms. In our quest to systematically uncover masked mechanisms in eukaryotic cells, we developed an extragenic suppressor screening method using haploid spores deleted of an essential gene in the fission yeast Schizosaccharomyces pombe. We screened for the 'bypass' suppressors of lethality of 92 randomly selected genes that are essential for viability in standard laboratory culture conditions. Remarkably, extragenic mutations bypassed the essentiality of as many as 20 genes (22%), 15 of which have not been previously reported. Half of the bypass-suppressible genes were involved in mitochondria function; we also identified multiple genes regulating RNA processing. 18 suppressible genes were conserved in the budding yeast Saccharomyces cerevisiae, but 13 of them were non-essential in that species. These trends suggest that essentiality bypass is not a rare event and that each organism may be endowed with secondary or backup mechanisms that can substitute for primary mechanisms in various biological processes. Furthermore, the robustness of our simple spore-based methodology paves the way for genome-scale screening.Key words: Schizosaccharomyces pombe, extragenic suppressor screening, bypass of essentiality (BOE), cut7 (kinesin-5), hul5 (E3 ubiquitin ligase).

中文翻译:

裂殖酵母 15 个新的可绕过的必需基因的鉴定。

每个生物体都有一组不同的基因,这些基因对其生存至关重要。这表明,在进化过程中的某些情况下,通过“掩蔽”替代机制的表现,生物体可以容忍必需基因的丢失。在我们寻求系统地揭示真核细胞中的掩蔽机制的过程中,我们开发了一种基因外抑制筛选方法,该方法使用在裂殖酵母裂殖酵母中删除了一个必需基因的单倍体孢子。我们筛选了 92 个随机选择的基因的致死性“旁路”抑制因子,这些基因对于标准实验室培养条件下的生存能力至关重要。值得注意的是,基因外突变绕过了多达 20 个基因 (22%) 的重要性,其中 15 个以前没有被报道过。一半的旁路抑制基因与线粒体功能有关;我们还发现了多个调节 RNA 加工的基因。18 个可抑制基因在发芽酵母酿酒酵母中得到保存,但其中 13 个在该物种中是非必需的。这些趋势表明,本质旁路并非罕见事件,并且每个生物体都可能被赋予次要或备用机制,可以替代各种生物过程中的主要机制。此外,我们基于孢子的简单方法的稳健性为基因组规模筛选铺平了道路。关键词:粟酒裂殖酵母,基因外抑制筛选,必需旁路 (BOE),cut7(驱动蛋白-5),hul5(E3 泛素连接酶) . 18 个可抑制基因在发芽酵母酿酒酵母中得到保存,但其中 13 个在该物种中是非必需的。这些趋势表明,本质旁路并非罕见事件,并且每个生物体都可能被赋予次要或备用机制,可以替代各种生物过程中的主要机制。此外,我们基于孢子的简单方法的稳健性为基因组规模筛选铺平了道路。关键词:粟酒裂殖酵母,基因外抑制筛选,必需旁路 (BOE),cut7(驱动蛋白-5),hul5(E3 泛素连接酶) . 18 个可抑制基因在发芽酵母酿酒酵母中得到保存,但其中 13 个在该物种中是非必需的。这些趋势表明,本质旁路并非罕见事件,并且每个生物体都可能被赋予次要或备用机制,可以替代各种生物过程中的主要机制。此外,我们基于孢子的简单方法的稳健性为基因组规模筛选铺平了道路。关键词:粟酒裂殖酵母,基因外抑制筛选,必需旁路 (BOE),cut7(驱动蛋白-5),hul5(E3 泛素连接酶) . 这些趋势表明,本质旁路并非罕见事件,并且每个生物体都可能被赋予次要或备用机制,可以替代各种生物过程中的主要机制。此外,我们基于孢子的简单方法的稳健性为基因组规模筛选铺平了道路。关键词:粟酒裂殖酵母,基因外抑制筛选,必需旁路 (BOE),cut7(驱动蛋白-5),hul5(E3 泛素连接酶) . 这些趋势表明,本质旁路并非罕见事件,并且每个生物体都可能被赋予次要或备用机制,可以替代各种生物过程中的主要机制。此外,我们基于孢子的简单方法的稳健性为基因组规模筛选铺平了道路。关键词:粟酒裂殖酵母,基因外抑制筛选,必需旁路 (BOE),cut7(驱动蛋白-5),hul5(E3 泛素连接酶) .
更新日期:2019-11-01
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