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Genetic diversity of HLA system in two populations from Chiapas, Mexico: Tuxtla Gutiérrez and rural Chiapas.
Human Immunology ( IF 3.1 ) Pub Date : 2019-07-22 , DOI: 10.1016/j.humimm.2019.07.285
Rodrigo Barquera 1 , Francisco Juárez-Nicolás 2 , Julio César Martínez-Álvarez 3 , Komathi Sree Ponnandai-Shanmugavel 4 , Diana Iraíz Hernández-Zaragoza 5 , Tannya Verónica Vázquez-Castillo 6 , Esteban Arrieta-Bolaños 7 , Stephen Clayton 4 , Raúl Solís-Martínez 6 , Andrea Ortega-Yáñez 8 , María Araceli Arrazola-García 3 , Alexander Immel 9 , Alicia Bravo-Acevedo 10 , María Del Rosario Vega-Martínez 11 , Gamaliel Benítez-Arvizu 12 , Raquel García-Álvarez 13 , Virginia Martínez-Bezies 14 , Ariadna Escutia-González 2 , Vicencio Juárez-Barreto 15 , Norma Salgado-Galicia 11 , Bárbara Novelo-Garza 16 , Joaquín Zúñiga 17 , Edmond J Yunis 18 , Carolina Bekker-Méndez 19 , Julio Granados 20
Affiliation  

We studied HLA class I (HLA-A, -B) and class II (HLA-DRB1, -DQB1) alleles by PCR-SSP based typing in 173 Mexicans from the state of Chiapas living in the city of Tuxtla Gutiérrez (N = 52) and rural communities (N = 121), to obtain information regarding allelic and haplotypic frequencies. We found that the most frequent haplotypes in Chiapas include 12 Native American and one European haplotype. Admixture estimates revealed that the main genetic components in Chiapas are Native American (71.61 ± 0.58% by ML; 53.16% of Native American haplotypes) and European (26.39 ± 5.05% by ML; 25.86% of European haplotypes), and a less prominent African genetic component (2.00 ± 5.20% by ML; 9.77% of African haplotypes).



中文翻译:

来自墨西哥恰帕斯州的两个种群中的HLA系统的遗传多样性:图斯特拉·古铁雷斯和恰帕斯州农村。

我们通过基于PCR-SSP的分型方法研究了HLA I类(HLA-A-B)和II类(HLA-DRB1-DQB1)等位基因,来自居住在TuxtlaGutiérrez市的恰帕斯州的173名墨西哥人(N = 52 )和农村社区(N = 121),以获取有关等位基因和单倍型频率的信息。我们发现恰帕斯州最常见的单体型包括12个美洲原住民和1个欧洲单体型。外加剂估计显示,恰帕斯州的主要遗传成分是美洲原住民(按ML分类为71.61±0.58%;美国原住民单倍型为53.16%)和欧洲(按ML分类为26.39±5.05%;欧洲单倍型为25.86%),以及不太突出的非洲遗传成分(按ML值的2.00±5.20%;非洲单倍型的9.77%)。

更新日期:2019-07-22
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