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Characterization of covalent crosslinking strategies for synthesizing DNA-based bioconjugates.
Journal of Biological Engineering ( IF 5.7 ) Pub Date : 2019-07-10 , DOI: 10.1186/s13036-019-0191-2
Malithi P Wickramathilaka 1 , Bernard Y Tao 1
Affiliation  

An adapted strategy from the conventional 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide hydrochloride (EDC) crosslinking method was developed to form a covalently coupled phosphoramidated single stranded DNA (ssDNA). Matrix assisted laser desorption ionization-time of flight (MALDI-TOF) results demonstrated that the phosphoramidated ssDNA conjugate is stable for several days, and that phosphoramidation occurred exclusively at the 5' phosphate of ssDNA. A reversed phase high-performance liquid chromatography (RP-HPLC) method with UV detection was developed to determine the yield of conjugates. The methods coefficients of variation (%CV) were less than 6%, and biases ranged from - 5.1 - 1.2%. The conjugate yield via the conventional EDC method was 68.3 ± 2.2%, while that of the adapted EDC/Imidazole method was 79.0 ± 2.4% (n = 10). This study demonstrates a convenient one pot strategy for crosslinking biological molecules.

中文翻译:

用于合成基于DNA的生物共轭物的共价交联策略的表征。

从常规的1-乙基-3-(3-二甲基氨基丙基)碳二亚胺盐酸盐(EDC)交联方法开发了一种适应策略,以形成共价偶联的磷酰胺化单链DNA(ssDNA)。基质辅助激光解吸电离飞行时间(MALDI-TOF)结果表明,磷酸化的ssDNA共轭物稳定了几天,而磷酰胺化仅发生在ssDNA的5'磷酸上。建立了具有紫外检测功能的反相高效液相色谱(RP-HPLC)方法,以测定结合物的收率。方法的变异系数(%CV)小于6%,偏差范围为-5.1-1.2%。通过常规EDC方法的偶联物收率为68.3±2.2%,而经过改进的EDC /咪唑方法的偶联物收率为79.0±2.4%(n = 10)。
更新日期:2020-04-22
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