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Phylogenetic position of the presumably extinct slender-billed curlew, Numenius tenuirostris.
Mitochondrial DNA Part A ( IF 1.1 ) Pub Date : 2019-04-10 , DOI: 10.1080/24701394.2019.1597862
Fedor S Sharko 1 , Eugenia S Boulygina 2 , Sergey M Rastorguev 2 , Svetlana V Tsygankova 2 , Pavel S Tomkovich 3 , Artem V Nedoluzhko 2, 4
Affiliation  

The high-capacity DNA analysis of museum samples opens new opportunities, associated with the investigation of extinct species evolution. Here, the complete mitochondrial genome of the presumably extinct bird species, the slender-billed curlew Numenius tenuirostris (Charadriiformes: Scolopacidae) is presented. Our results showed that mitochondrial DNA (mtDNA) is 16,705 base pairs (bp) in length and contain 13 protein-coding genes, two rRNA genes, and 22 tRNA genes. The overall base composition of the genome is 30.8% – A, 29.8% – C, 25.4% – T, 14.0% – G, and without a significant GC bias of 43.7%. Phylogenetic analyses based on the cytochrome B (cytB) gene and the whole mtDNA sequences revealed that N. tenuirostris had a close genetic relationship to Eurasian curlew (N. arquata), Far Eastern curlew (N. madagascariensis), and long-billed curlew – N. americanus. Besides, it reveals that Numenius genus is genetically distant from other Scolopacidae taxons. Together, these results provide a clear genetic perspective into the speciation process among the curlew genus members and points to a clear taxonomic position of N. tenuirostris.



中文翻译:

可能灭绝的细长嘴curl(Numenius tenuirostris)的系统发生位置。

博物馆样本的高容量DNA分析为灭绝物种进化的研究提供了新的机遇。在这里,介绍了可能灭绝的鸟类物种的完整线粒体基因组,即长嘴curl(Numenius tenuirostris)(Charadriiformes:Scolopacidae)。我们的结果表明,线粒体DNA(mtDNA)的长度为16,705个碱基对(bp),包含13个蛋白质编码基因,两个rRNA基因和22个tRNA基因。基因组的总体碱基组成为30.8%– A,29.8%– C,25.4%– T,14.0%–G,并且没有明显的GC偏倚43.7%。根据细胞色素B(cytB)基因和整个mtDNA序列进行的系统发育分析表明,N. tenuirostris不得不白腰杓鹬(密切的亲缘关系N. arquata),大杓鹬(N.蕉)和长嘴鹬- N.美洲。此外,它揭示了努梅尼乌斯属与其他鹬类分类群遗传遥远。总之,这些结果为the属属成员之间的物种形成过程提供了清晰的遗传学观点,并指出了N. tenuirostris的明确分类学位置。

更新日期:2019-04-10
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