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Machine learning models for predicting endocrine disruption potential of environmental chemicals.
Journal of Environmental Science and Health, Part C Pub Date : 2019-01-11 , DOI: 10.1080/10590501.2018.1537155
Marco Chierici 1 , Marco Giulini 1 , Nicole Bussola 1, 2 , Giuseppe Jurman 1 , Cesare Furlanello 1
Affiliation  

We introduce here ML4Tox, a framework offering Deep Learning and Support Vector Machine models to predict agonist, antagonist, and binding activities of chemical compounds, in this case for the estrogen receptor ligand-binding domain. The ML4Tox models have been developed with a 10 × 5-fold cross-validation schema on the training portion of the CERAPP ToxCast dataset, formed by 1677 chemicals, each described by 777 molecular features. On the CERAPP "All Literature" evaluation set (agonist: 6319 compounds; antagonist 6539; binding 7283), ML4Tox significantly improved sensitivity over published results on all three tasks, with agonist: 0.78 vs 0.56; antagonist: 0.69 vs 0.11; binding: 0.66 vs 0.26.

中文翻译:

机器学习模型,用于预测环境化学物质的内分泌破坏潜能。

我们在这里介绍ML4Tox,这是一个提供深度学习和支持向量机模型的框架,用于预测化合物的激动剂,拮抗剂和结合活性,在这种情况下为雌激素受体配体结合域。ML4Tox模型已在CERAPP ToxCast数据集的训练部分上以10×5倍交叉验证方案进行开发,该数据由1677种化学物质组成,每种由777个分子特征描述。在CERAPP“所有文献”评估集中(激动剂:6319种化合物;拮抗剂6539;结合7283),与激动剂:0.78 vs 0.56;激动剂相比,ML4Tox显着提高了所有三个任务公布结果的敏感性。拮抗剂:0.69比0.11;绑定:0.66和0.26。
更新日期:2019-11-01
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