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CDeep3M—Plug-and-Play cloud-based deep learning for image segmentation
Nature Methods ( IF 36.1 ) Pub Date : 2018-08-31 , DOI: 10.1038/s41592-018-0106-z
Matthias G. Haberl , Christopher Churas , Lucas Tindall , Daniela Boassa , Sébastien Phan , Eric A. Bushong , Matthew Madany , Raffi Akay , Thomas J. Deerinck , Steven T. Peltier , Mark H. Ellisman

As biomedical imaging datasets expand, deep neural networks are considered vital for image processing, yet community access is still limited by setting up complex computational environments and availability of high-performance computing resources. We address these bottlenecks with CDeep3M, a ready-to-use image segmentation solution employing a cloud-based deep convolutional neural network. We benchmark CDeep3M on large and complex two-dimensional and three-dimensional imaging datasets from light, X-ray, and electron microscopy.



中文翻译:

CDeep3M-基于即插即用的基于云的深度学习,用于图像分割

随着生物医学成像数据集的扩展,深层神经网络被认为对图像处理至关重要,然而,通过设置复杂的计算环境和高性能计算资源的可用性,社区访问仍然受到限制。我们使用CDeep3M解决了这些瓶颈,CDeep3M是一种使用基于云的深度卷积神经网络的即用型图像分割解决方案。我们在来自光,X射线和电子显微镜的大型和复杂的二维和三维成像数据集上对CDeep3M进行基准测试。

更新日期:2018-09-01
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