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A many probes-one spot hybridization oligonucleotide microarray
Analytical and Bioanalytical Chemistry ( IF 3.8 ) Pub Date : 2018-06-22 , DOI: 10.1007/s00216-018-1190-8
Elena V. Kostina , Alexander N. Sinyakov , Vladimir A. Ryabinin

A variant of the hybridization oligonucleotide microarray, utilizing the principle of many probes-one spot (MPOS-microarrays), is proposed. A case study based on Orthopoxviruses (Variola, Monkeypox, and Ectromelia viruses) demonstrates a considerable increase in the fluorescence signal (up to 100-fold) when several oligonucleotide probes are printed to one spot. Moreover, the specificity of detection also increases (almost 1000-fold), allowing the use of probes that individually lack such high specificity. The optimal probes have a Tm of 32–37 °C and length of 13–15 bases. We suggest that the high specificity and sensitivity of the MPOS-microarray is a result of cooperativity of DNA binding with all probes immobilized in the spot. This variant of DNA detection can be useful for designing biosensors, tools for point-of-care (POC) diagnostics, microbial ecology, analysis of clustered regularly interspaced short palindromic repeats (CRISPR), and others.

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中文翻译:

多探针一点杂交寡核苷酸微阵列

提出了杂交寡核苷酸微阵列的一种变体,它利用了许多探针一点的原理(MPOS-微阵列)。基于为例正痘病毒天花猴痘鼠痘病毒)展示了当几个寡核苷酸探针被印到一个点时荧光信号的显着增加(最多100倍)。此外,检测的特异性也增加了(几乎是1000倍),从而允许使用个别缺乏这种高特异性的探针。最佳探针的Tm为32–37°C,长度为13–15个碱基。我们认为,MPOS-微阵列的高特异性和敏感性是DNA与固定在该点上的所有探针结合的协同作用的结果。DNA检测的这种变体可用于设计生物传感器,即时诊断(POC)诊断工具,微生物生态学,聚类的规则间隔的短回文重复序列(CRISPR)等。

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更新日期:2018-06-22
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