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Solvent effect on the energetics of Proton Coupled Electron Transfer in Guanine-Cytosine pair in chloroform by mixed explicit and implicit solvation models
Chemical Physics ( IF 2.0 ) Pub Date : 2018-07-18 , DOI: 10.1016/j.chemphys.2018.07.012
Lara Martinez-Fernandez , Giacomo Prampolini , Javier Cerezo , Yanli Liu , Fabrizio Santoro , Roberto Improta

The Watson-Crick hydrogen bonded pair formed by deoxyGuanosine and deoxyCytidine (GC) in chloroform has been analysed by classical Molecular Dynamics simulations, which shows the existence of several fairly stable solute/solvent hydrogen bonds. Time-Dependent Density Functional Theory (TD-DFT) calculations with M052X functional, including solvation effect by a mixed continuum/discrete model, show that solvent stabilizes G →C Charge Transfer excited states (CTGC). The Proton Transfer (PT) processes that can occur in CTGC have been mapped by TD-DFT combining State Specific and Linear Response implementations of the Polarizable Continuum Model. For the first time, the effect of explicit solute/solvent interactions on the PT is considered by studying models containing up to three CHCl3 molecules. Our study shows that PT from the N1 atom of G to the N3 of C is exoergonic also in solution but, at variance with what observed in gas-phase, a stable minimum is predicted for CTGC state in chloroform.



中文翻译:

显式和隐式混合溶剂模型对氯仿中鸟嘌呤-胞嘧啶对质子耦合电子转移能的溶剂影响

通过经典的分子动力学模拟分析了由脱氧瓜氨酸和脱氧胞苷(GC)在氯仿中形成的沃森-克里克氢键对,表明存在多个相当稳定的溶质/溶剂氢键。具有M052X功能的时变密度泛函理论(TD-DFT)计算,包括混合连续/离散模型的溶剂化作用,表明溶剂稳定了G→C电荷转移激发态(CT GC)。TD-DFT结合了极化连续体模型的特定于状态和线性响应的实现方式,绘制了CT GC中可能发生的质子转移(PT)过程。首次通过研究包含多达三个CHCl的模型来考虑显式溶质/溶剂相互作用对PT的影响3个分子。我们的研究表明,在溶液中,从G的N1原子到C的N3的PT也是外能的,但与气相观察到的差异,氯仿中CT GC的状态预测为稳定的最小值。

更新日期:2018-07-19
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