this paper applies an epsilon-based measure DEA approach to evaluate the regional ecological energy efficiency for 30 regions in China and its three major areas for the period 2007–2015. Based on this, the temporal and spatial disparities of China's regional ecological energy efficiency are investigated. To explore the sources of China's regional ecological energy inefficiency, the overall ecological energy inefficiency is decomposed into several input-specific inefficiencies. And then, the energy saving and pollution abatement potentials of each Chinese region is calculated using the differences between the target values and the actual values of energy consumption and pollution emissions. The empirical results show that China's ecological energy efficiency is relatively low and regional differences are significant for the period 2007–2015. It can be demonstrated that the inefficiency to abate pollution is the main contributor to China's regional ecological energy inefficiency. By calculating the potentials of energy saving and pollution abatement, it can be found that the east area has the lowest potential, followed by the central area, with the west area having the highest potential.