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The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics
Nucleic Acids Research ( IF 14.9 ) Pub Date : 2017-11-23 , DOI: 10.1093/nar/gkx1152
Laurel Cooper , Austin Meier , Marie-Angélique Laporte , Justin L Elser , Chris Mungall , Brandon T Sinn , Dario Cavaliere , Seth Carbon , Nathan A Dunn , Barry Smith , Botong Qu , Justin Preece , Eugene Zhang , Sinisa Todorovic , Georgios Gkoutos , John H Doonan , Dennis W Stevenson , Elizabeth Arnaud , Pankaj Jaiswal

The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides access to species-specific Crop Ontologies developed by various plant breeding and research communities from around the world. We provide integrated data on plant traits, phenotypes, and gene function and expression from 95 plant taxa, annotated with reference ontology terms. The Planteome project is developing a plant gene annotation platform; Planteome Noctua, to facilitate community engagement. All the Planteome ontologies are publicly available and are maintained at the Planteome GitHub site (https://github.com/Planteome) for sharing, tracking revisions and new requests. The annotated data are freely accessible from the ontology browser (http://browser.planteome.org/amigo) and our data repository.

中文翻译:

Planteome数据库:参考本体,植物基因组学和表型学的综合资源

Planteome项目(http://www.planteome.org)提供了一套针对植物的参考和特定物种的本体论,以及对基因和表型的注释。本体是大型且不断增长的植物基因组学,表型学和遗传学数据语料库的语义集成的通用标准。参考本体包括由Planteome项目开发的植物本体,植物特征本体和植物实验条件本体,以及基因本体,生物感兴趣的化学实体,表型和属性本体等。该项目还提供了访问来自世界各地的各种植物育种和研究社区开发的特定物种的作物本体的途径。我们提供了来自95个植物分类群的植物性状,表型,基因功能和表达的完整数据,并带有参考本体术语。Planteome项目正在开发一种植物基因注释平台;Planteome Noctua,以促进社区参与。所有Planteome本体都是公开可用的,并在Planteome GitHub网站上进行维护(https://github.com/Planteome),用于共享,跟踪修订和新请求。可以从本体浏览器(http://browser.planteome.org/amigo)和我们的数据存储库免费访问带注释的数据。
更新日期:2018-01-05
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