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Homozygous missense variants in YKT6 result in loss of function and are associated with developmental delay, with or without severe infantile liver disease and risk for hepatocellular carcinoma
Genetics in Medicine ( IF 8.8 ) Pub Date : 2024-03-21 , DOI: 10.1016/j.gim.2024.101125
Mengqi Ma , Mythily Ganapathi , Yiming Zheng , Kai-Li Tan , Oguz Kanca , Kevin E. Bove , Norma Quintanilla , Sebnem O. Sag , Sehime G. Temel , Charles A. LeDuc , Amanda J. McPartland , Elaine M. Pereira , Yufeng Shen , Jacob Hagen , Christie P. Thomas , Nhu Thao Nguyen Galván , Xueyang Pan , Shenzhao Lu , Jill A. Rosenfeld , Daniel G. Calame , Michael F. Wangler , James R. Lupski , Davut Pehlivan , Paula M. Hertel , Wendy K. Chung , Hugo J. Bellen

YKT6 plays important roles in multiple intracellular vesicle trafficking events but has not been associated with Mendelian diseases. We report 3 unrelated individuals with rare homozygous missense variants in who exhibited neurological disease with or without a progressive infantile liver disease. We modeled the variants in . We generated wild-type and variant genomic rescue constructs of the fly ortholog and compared their ability in rescuing the loss-of-function phenotypes in mutant flies. We also generated a allele to assess the expression pattern of Two individuals are homozygous for [NM_006555.3:c.554A>G p.(Tyr185Cys)] and exhibited normal prenatal course followed by failure to thrive, developmental delay, and progressive liver disease. Haplotype analysis identified a shared homozygous region flanking the variant, suggesting a common ancestry. The third individual is homozygous for [NM_006555.3:c.191A>G p.(Tyr64Cys)] and exhibited neurodevelopmental disorders and optic atrophy. Fly is essential and is expressed in the fat body (analogous to liver) and central nervous system. Wild-type genomic rescue constructs can rescue the lethality and autophagic flux defects, whereas the variants are less efficient in rescuing the phenotypes. The variants are partial loss-of-function alleles, and the p.(Tyr185Cys) is more severe than p.(Tyr64Cys).

中文翻译:

YKT6 中的纯合错义变异会导致功能丧失,并与发育迟缓相关,伴或不伴严重婴儿肝病和肝细胞癌风险

YKT6 在多种细胞内囊泡运输事件中发挥重要作用,但与孟德尔疾病无关。我们报告了 3 名不相关的个​​体,他们具有罕见的纯合错义变异,他们表现出神经系统疾病,伴有或不伴有进行性婴儿肝病。我们在 中对变体进行了建模。我们生成了果蝇直系同源物的野生型和变异基因组拯救构建体,并比较了它们拯救突变果蝇功能丧失表型的能力。我们还生成了一个等位基因来评估两个个体的 [NM_006555.3:c.554A>G p.(Tyr185Cys)] 纯合子的表达模式,并表现出正常的产前过程,随后出现发育迟缓、发育迟缓和进行性肝病。单倍型分析确定了该变体侧翼的共享纯合区域,表明有共同的祖先。第三个人是 [NM_006555.3:c.191A>G p.(Tyr64Cys)] 纯合子,并表现出神经发育障碍和视神经萎缩。苍蝇是必需的,在脂肪体(类似于肝脏)和中枢神经系统中表达。野生型基因组拯救构建体可以拯救致死性和自噬流缺陷,而变体在拯救表型方面效率较低。这些变异是部分功能丧失的等位基因,p.(Tyr185Cys) 比 p.(Tyr64Cys) 更严重。
更新日期:2024-03-21
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