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Matrix Mechanosensing: From Scaling Concepts in ’Omics Data to Mechanisms in the Nucleus, Regeneration, and Cancer
Annual Review of Biophysics ( IF 12.4 ) Pub Date : 2017-05-22 00:00:00 , DOI: 10.1146/annurev-biophys-062215-011206
Dennis E. Discher 1 , Lucas Smith 1 , Sangkyun Cho 1 , Mark Colasurdo 2 , Andrés J. García 2 , Sam Safran 3
Affiliation  

Many of the most important molecules of life are polymers. In animals, the most abundant of the proteinaceous polymers are the collagens, which constitute the fibrous matrix outside cells and which can also self-assemble into gels. The physically measurable stiffness of gels, as well as tissues, increases with the amount of collagen, and cells seem to sense this stiffness. An understanding of this mechanosensing process in complex tissues, including fibrotic disease states with high collagen, is now utilizing ’omics data sets and is revealing polymer physics–type, nonlinear scaling relationships between concentrations of seemingly unrelated biopolymers. The nuclear structure protein lamin A provides one example, with protein and transcript levels increasing with collagen 1 and tissue stiffness, and with mechanisms rooted in protein stabilization induced by cytoskeletal stress. Physics-based models of fibrous matrix, cytoskeletal force dipoles, and the lamin A gene circuit illustrate the wide range of testable predictions emerging for tissues, cell cultures, and even stem cell–based tissue regeneration. Beyond the epigenetics of mechanosensing, the scaling in cancer of chromosome copy number variations and other mutations with tissue stiffness suggests that genomic changes are occurring by mechanogenomic processes that now require elucidation.

中文翻译:


矩阵机械感测:从“组学数据”中的标度概念到核,再生和癌症的机制

生命中许多最重要的分子是聚合物。在动物中,最丰富的蛋白质聚合物是胶原蛋白,它们构成细胞外部的纤维基质,并且还可以自组装成凝胶。凝胶以及组织的可物理测量的刚度随胶原蛋白的含量而增加,而细胞似乎可以感觉到这种刚度。对复杂组织中这种机械传感过程的理解,包括具有高胶原蛋白的纤维化疾病状态,现在正在利用组学数据集,并揭示了似乎无关的生物聚合物浓度之间的聚合物物理类型,非线性比例关系。核蛋白Lamin A的核结构就是一个例子,蛋白质和转录水平随胶原蛋白1和组织刚度的增加而增加,并具有根源于细胞骨架压力诱导的蛋白质稳定化的机制。基于物理模型的纤维基质,细胞骨架力偶极子和lamin A基因回路表明了针对组织,细胞培养甚至基于干细胞的组织再生的可测预测范围广泛。除了机械传感的表观遗传学外,在癌症中染色体拷贝数变异和具有组织刚度的其他突变的缩放表明,基因组变化是由机械基因组过程引起的,现在需要阐明。

更新日期:2017-05-22
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