Gracey, Andrew - University of Southern California, USC

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Ph.D. Comparative & Molecular Physiology, University of Liverpool, UK

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Hedgecock, D., Shin, G., Gracey, A. Y., Den Berg, D. V., Samanta, M. P. (2015). Second-Generation Linkage Maps for the Pacific Oyster Crassostrea gigas Reveal Errors in Assembly of Genome Scaffolds. G3 (Bethesda). Vol. 5 (102015/08/08), pp. 2007-19. Lockwood, B. L., Connor, K. M., Gracey, A. Y. (2015). The environmentally tuned transcriptomes of Mytilus mussels. J Exp Biol. Vol. 218 (Pt 122015/06/19), pp. 1822-33. Mandic, M., Ramon, M. L., Gracey, A. Y., Richards, J. G. (2014). Divergent transcriptional patterns are related to differences in hypoxia tolerance between the intertidal and the subtidal sculpins. Mol Ecol. Vol. 23 (242014/11/06), pp. 6091-103. Sakamaki, K., Shimizu, K., Iwata, H., Imai, K., Satou, Y., Funayama, N., Nozaki, M., Yajima, M., Nishimura, O., Higuchi, M., Chiba, K., Yoshimoto, M., Kimura, H., Gracey, A. Y., Shimizu, T., Tomii, K., Gotoh, O., Akasaka, K., Sawasaki, T., Miller, D. J. (2014). The apoptotic initiator caspase-8: its functional ubiquity and genetic diversity during animal evolution. Mol Biol Evol. Vol. 31 (122014/09/11), pp. 3282-301. Nydam, M. L., Netuschil, N., Sanders, E., Langenbacher, A., Lewis, D. D., Taketa, D. A., Marimuthu, A., Gracey, A. Y., De Tomaso, A. W. (2013). The candidate histocompatibility locus of a Basal chordate encodes two highly polymorphic proteins. PLoS One. Vol. 8 (62013/07/05), pp. e65980. Connor, K. L., Gracey, A. Y. (2012). High resolution analysis of metabolic cycles in the intertidal mussel Mytilus californianus. American Journal of Physiology - Regulatory, Integrative, and Comparative Physiology. Vol. 302 (Oct 19th 2011 [Epub ahead of print]), pp. R103-R111. Gracey, A. Y., Lee, B., Higashi, R., Fan, T. (2011). Hypoxia-induced mobilization of triglycerides in the euryoxic goby, Gillichthys mirabilis. Journal of Experimental Biology. Vol. 214, pp. 3005-3012. Connor, K. M., Gracey, A. Y. (2011). Circadian cycles are the dominant transcriptional rhythm in the intertidal mussel Mytilus californianus. Proceedings of the National Academy of Sciences USA. Vol. 108, pp. 16110-16115. Chaney, M. L., Gracey, A. Y. (2011). Mass mortality in Pacific oysters is associated with a specific gene expression signature. Molecular Ecology. Vol. 20, pp. 2942-2954. Li, W., Gracey, A. Y., Vieira Mello, L., Brass, A., Cossins, A. R. (2009). ExprAlign - the identification of ESTs in non-model species by alignment of cDNA microarray expression profiles. BMC Genomics. Vol. 10 (560) Fedorov, V., Goropashnaya, A. V., T?ien, O., Stewart, N. C., Gracey, A. Y., Chang, C., Qin, S., Pertea, G., Quackenbush, J., Showe, L. C., Showe, M. K., Boyer, B. B., Barnes, B. M. (2009). Elevated expression of protein biosynthesis genes in liver and muscle of hibernating black bears (Ursus americanus). Physiological Genomics. Vol. 10 (37), pp. 108-118. Gracey, A. Y., Chaney, M. L., Boomhower, J. P., Tyburczy, W. R., Connor, K., Somero, G. N. (2008). Rhythms of Gene Expression in a Fluctuating Intertidal Environment. Current Biology. Vol. 18 (19), pp. 1501-1507. Evans, H., De Tomaso, A., Quail, M., Rogers, J., Gracey, A. Y., Cossins, A. R., Berenbrink, M. (2008). Ancient and modern duplication events and the evolution of stearoyl-CoA desaturases in teleost fishes. Physiological Genomics. Vol. 35, pp. 18-29. Gracey, A. Y. (2008). The Gillichthys mirabilis Cooper array: a platform to investigate the molecular basis of phenotypic plasticity. Journal of Fish Biology. Vol. 72, pp. 2118-2132. Williams, D. R., Li, W., Hughes, M. A., Gonzalez, S. F., Vernon, C., Vidal, M. C., Jeney, Z., Jeney, G., Dixon, P., McAndrew, B., Bartfai, R., Oban, L., Trudeau, V., Rogers, J., Matthews, L., Fraser, E. J., Gracey, A. Y., Cossins, A. R. (2008). Genomic resources and microarrays for the common carp Cyprinus carpio L. Journal of Fish Biology. Vol. 72, pp. 2095-2117. Olohan, L. A., Li, W., Wulff, T., Jarmer, H., Gracey, A. Y., Cossins, A. R. (2008). Detection of anoxia-responsive genes in cultured cells of the rainbow trout Oncorhynchus mykiss (Walbaum), using an optimized, genome-wide oligoarray. Journal of Fish Biology. Vol. 72, pp. 2170-2186. McLean, L., Young, I. S., Doherty, M. K., Robertson, D. H., Cossins, A. R., Gracey, A. Y., Beynon, R. B., Whitfield, P. D. (2007). Global Cooling: Cold acclimation and the expression of soluble proteins in carp skeletal muscle. Proteomics. Vol. 15, pp. 2667-81. Ahdesmaki, M., Lahdesmaki, H., Gracey, A., Schmulevich, L., Yli-Harja, O. (2007). Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data. BMC Bioinformatics. Vol. 8, pp. 233. Gracey, A. Y. (2007). Interpreting physiological responses to environmental change through gene expression profiling. Journal of Experimental Biology. Vol. 210, pp. 1593-1601. Haywood, S. A., Murray, P. A., Govan, G. G., Gracey, A. Y., Cossins, A. R. (2007). An explicit test of the phospholipid saturation hypothesis of acquired cold tolerance in Caenorhabditis elegans. Proceedings of the National Academy of Sciences USA. Vol. 104, pp. 5489-5494. Buckley, B. A., Gracey, A. Y., Somero, G. N. (2006). The cellular response to heat stress in the goby Gillichthys mirabilis: a cDNA microarray and protein-level analysis. Journal of Experimental Biology. Vol. 209, pp. 2660-2667. Cossins, A. R., Fraser, E. J., Hughes, M., Gracey, A. Y. (2006). Post-genomic approaches to understanding the mechanisms of environmentally induced phenotypic plasticity. Journal of Experimental Biology. Vol. 209, pp. 2328-2336. Fraser, E. J., Vieira de Mello, L., Ward, D., Rees, H. R., Williams, D., Gracey, A. Y., Cossins, A. R. (2006). Hypoxia-inducible myoglobin expression in nonmuscle tissues. Proceedings of the National Academy of Sciences USA. Vol. 103, pp. 2977-2981. Williams, D., Epperson, L., Li, W., Hughes, M., Taylor, R. R., Rogers, J., Martin, S., Cossins, A. R., Gracey, A. Y. (2005). Seasonally hibernating phenotype assessed through transcript screening. Physiological Genomics. Vol. 24, pp. 13-22.. Gracey, A. Y., Fraser, E. J., Li, W., Fang, Y., Taylor, R. R., Rogers, J., Brass, A. (2004). Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate. Proceedings of the National Academy of Sciences USA. Vol. 101, pp. 16970-16975.