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1. Wang Y, Yang Y*, Chen M*. Identification of sex-specific splicing via comparative transcriptome analysis of gonads from sea cucumber Apostichopus japonicus. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 2022, 45: 101031.
2. Wang Y, Yang Y*, Li Y, Chen M*. Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study. BMC Genomics 2022, 23(1):391.
3. Yang Y#, Zhou T#, Liu Y#, Tian C, Bao L, Wang W, Zhang Y, Liu S, Shi H, Tan S, Gao D, Dunham RA, Liu Z. Identification of an epigenetically marked locus within the sex determination region of channel catfish. International Journal of Molecular Sciences, 2022, 23(10):5471.
4. Yang Y, Chen M, Wang Y, Sun L. A novel full-length transcriptome resource for sea cucumber Apostichopus japonicus using Pacbio SMRT sequencing. Frontiers in Marine Science, 2022, 9:834255.
5. Yang Y, Li X, Sun L. Triterpenoid saponin biosynthesis genes and their expression patterns during development of the sea cucumber Apostichopus japonicus. Journal of Oceanology and Limnology, 2021, 39:2295-2308.
6. Yang Y, Zheng Y, Sun L, Chen M. Genome-wide DNA methylation signatures of sea cucumber Apostichopus japonicus during environmental induced aestivation. Genes, 2020, 11(9):1020.
7. Yang Y#, Fu Q#, Wang X, Liu Y, Zeng Q, Li Y, Gao S, Bao L, Liu S, Gao D, Dunham R, Liu Z. Comparative transcriptome analysis of the swimbladder reveals expression signatures in response to low oxygen stress in channel catfish, Ictalurus punctatus. Physiological Genomics, 2018, 50:636-647.
8. Yang Y#, Fu Q#, Liu Y, Wang X, Dunham R, Liu S, Bao L, Zeng Q, Zhou T, Li N, Qin Z, Jiang C, Gao D, Liu Z. Comparative transcriptome analysis reveals conserved branching morphogenesis related genes involved in chamber formation of catfish swimbladder. Physiological Genomics, 2018, 50:67-76.
9. Yang Y, Wang X, Liu Y, Fu Q, Tian C, Wu C, Shi H, Yuan Z, Tan S, Liu S, Gao D, Dunham R, Liu Z. Transcriptome analysis reveals enrichment of genes associated with auditory system in swimbladder of channel catfish. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 2018, 27:30-39.
10. Yang Y, Fu Q, Zhou T, Li Y, Liu S, Zeng Q, Wang X, Jin Y, Tian C, Qing Z, Dunham R, Liu Z. Analysis of apolipoprotein genes and their involvement in disease response of channel catfish after bacterial infection. Developmental & Comparative Immunology, 2017, 67:464-470.
11. Wang W#, Yang Y#, Tan S#, Zhou T, Liu Y, Tian C, Bao L, Xing D, Su B, Wang J, Zhang Y, Liu S, Shi H, Gao D, Dunham R, Liu Z. Genomic imprinting-like monoallelic paternal expression determines sex of channel catfish. Science Advances, 2022, 8(51):e adc8786.
12. Zhou T#, Yuan Z#, Tan S#, Jin Y#, Yang Y#, Shi H, Wang W, Niu D, Gao L, Jiang W, Gao D, Liu Z. A review of molecular responses of catfish to bacterial diseases and abiotic stresses. Frontiers in Physiology, 2018, 9:1113.
13. Khalil K, Elaswad A, Abdelrahman H, Michel M, Chen W, Liu S, Odin R, Ye Z, Drescher D, Vo K, Bugg W, Qin G, Yang Y, Backenstose N, Liu Z, Cone R, Dunham R. Editing the Melanocortin-4 Receptor Gene in Channel Catfish Using the CRISPR-Cas9 System. Fishes. 2023; 8(2):116.
14. Wang W, Tan S, Yang Y, Zhou T, Xing D, Su B, Wang J, Li S, Shang M, Gao D, Dunham R, Liu Z. Feminization of channel catfish with 17β-oestradiol involves methylation and expression of a specific set of genes independent of the sex determination region. 2022, 17(12):1820-1837.
15. Jin Y, Zhou T, Jiang W, Li N, Xu X, Tan S, Shi H, Yang Y, Yuan Z, Wang W, Qin G, Liu S, Gao D, Dunham R, Liu Z. Allelically and Differentially Expressed Genes After Infection of Edwardsiella ictaluri in Channel Catfish as Determined by Bulk Segregant RNA-Seq. 2022, 24(1):174-189.
16. Tang C, Mononen M, Lam W, Jin S, Zhuang X, Garcia-Barcelo M, Lin Q, Yang Y, Sahara M, Eroglu E, Chien K, Hong H, Tam P, Gruber P. Sequencing of a Chinese tetralogy of fallot cohort reveals clustering mutations in myogenic heart progenitors. JCI insight, 2021, 7(2): e152198.
17. Huang Y, Bugg W, Bangs M, Qin G, Drescher D, Backenstose N, Weng CC, Zhang Y, Khalil K, and Dong S, Elaswad A, Ye Z, Lu C, Vo K, Simora RM, Ma X, Taylor Z, Yang Y, Zhou T, Guo J, Salze G, Qin Z, Wang Y, Dunham RA. Direct and pleiotropic effects of the Masou Salmon Delta-5 Desaturase transgene in F1 channel catfish (Ictalurus punctatus). Transgenic Research, 2021, 30(2): 185-200.
18. Bao L, Tian C, Liu S, Zhang Y, Elaswad A, Yuan Z, Khalil K, Sun F, Yang Y, Zhou T, Li N, Tan S, Zeng Q, Liu Y, Li Y, Li Y, Gao D, Dunham R, Davis K, Waldbieser G, Liu Z. The Y chromosome sequence of the channel catfish suggests novel sex determination mechanisms in teleost fish. BMC Biology, 2019, 17:6.
19. Tan S, Wang W, Zhou T, Yang Y, Gao D, Dunham R, Liu Z. Polyadenylation sites and their characteristics in the genome of channel catfish (Ictalurus punctatus) as revealed by using RNA-Seq data. Comparative Biochemistry and Physiology Part D: Genomics and
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