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1. Xu, X.#, Wang, M.Z.#, Sun, J.X.#, Yu, Z.Y.#, Li, G.H., Yang, N.* and Xu, R.M.* (2021) Structure specific DNA recognition by the SLX1-SLX4 endonuclease complex. Nucleic Acid Research, Published online June 28, 2021.
2. Ma, S.#, Cao, C.#, Che, S.Y.#, Wang, Y.J.#, Su, D.X.#, et al., Yao, Z.*, Yang, N.* and Shi, L.* (2021) PHF8-promoted TOPBP1 demethylation drives ATR activation and preserves genome stability. Science Advances, Vol. 7, eabf7684.
3. Sun, J.X.#, Li, Z.B#. and Yang, N.* (2021) Mechanism of the conformational change of the protein methyltransferase SMYD3: a molecular dynamics simulation study. International Journal of Molecular Sciences. Accepted.
4. Sun, J.X., Liu, M.J. and Yang, N.* (2021) Insight into the origin of SARS-CoV-2 through structural analysis of receptor recognition: a molecular simulation study. RSC Advances, Vol. 11, 8718-8729.
5. Liu, F. and Yang, N.* (2020) Multiscale landscape of molecular mechanism of SIRT1 activation by STACs. Physical Chemistry Chemical Physics, Vol. 22, 826-837.
6. Song, X.S.#, Yang, L.L.#, Wang, M.Z., Gu, Y., Ye, B.Q., Fan, Z.S., Xu, R.M.* and Yang, N.* (2019) A higher-order configuration of the heterodimeric DOT1L-AF10 coiled-coil domains potentiates their leukemogenenic activity. Proc. Natl. Acad. Sci. USA, Vol. 116, 19917-19923.
7. Sun, J.X., Shi, F.D. and Yang, N.* (2019) Exploration of the substrate preference of lysine methyltransferase SMYD3 by molecular dynamics simulations. ACS Omega, Vol. 4, 19573-19581.
8. Li, Y.#, Duan, F.F.#, Zhao, Y.T., Gu, K.L., Liao, L.Q., Su, H.B., Hao, J., Zhang, K., Yang, N. and Wang Y.M.* (2019) A TRIM71 binding long noncoding RNA Trincr1 represses FGF/ERK signaling in embryonic stem cells. Nature Communications, Vol. 10, 1368.
9. Zhang, L.#, Serra-Cardona, A.#, Zhou, H., Wang, N., Yang, N., Zhang, Z.* and Xu, R.M.* (2018) Multisite substrate recognition in Asf1-dependent acetylation of histone H3 K56 by Rtt109. Cell, Vol. 174, 818-830.
10. Fu, W.Q.#, Liu, N.#, Qiao, Q.#, Wang, M., Min, J.R., Zhu, B.*, Xu, R.M.* and Yang, N.* (2016) Structural Basis for Substrate Preference of SMYD3, A SET Domain-containing Protein Lysine Methyltransferase. Journal of Biological Chemistry, Vol. 291, 9173-9180.
11. Fang, D.#, Gan, H.#, Lee, J.H.#, Han, J.#, Wang, Z.#, Riester, S.M., Jin, L., Chen, J., Zhou, H., Wang, J., Zhang, H., Yang, N., Bradley, E.W., Ho, T.H., Rubin, B.P., Bridge, J.A., Thibodeau, S.N., Ordog, T., Chen, Y., van Wijnen, A.J., Oliveira, A.M., Xu, R.M., Westendorf, J.J. and Zhang, Z.* (2016) The histone H3.3K36M mutation reprograms the epigenome of chondroblastomas. Science, Vol. 29, 1316-1325.
12. Yang, N.#*, Yu, Z.Y.#, Hu, M.L.#, Wang, M., Lehmann, R.* and Xu, R.M.* (2015) Structure of Drosophila Oskar reveals a novel RNA binding protein. Proc. Natl. Acad. Sci. USA, Vol. 112, 11541-11546.
13. Cao, D.F., Wang, M., Qiu, X.Y., Liu, D.X., Jiang, H.L., Yang, N.* and Xu, R.M.* (2015) Structural basis for allosteric, substrate-dependent stimulation of SIRT1 activity by resveratrol. Genes & Development, Vol. 29, 1316-1325.
14. Wang, H., Wang, M., Yang, N.* and Xu, R.M.* (2015) Structure of the quaternary complex of histone H3-H4 heterodimer with chaperone ASF1 and the replicative helicase subunit MCM2. Protein & Cell, Vol. 6, 693-697.
15. Yang, D.X.#, Fang, Q.L.#, Wang, M.#, Ren, R., Wang, H., He, M., Sun, Y.W., Yang, N.* and Xu, R.M.* (2013) Nα-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain. Nature Structural & Molecular Biology, Vol. 20, 1116-1118.
16. Yang, N.#*, Wang, W.#, Wang, Y. #, Wang, M., Zhao, Q., Rao, Z., Zhu, B.* and Xu, R.M.* (2012) Distinct mode of methyl-H3K4 recognition by tandem tudor-like domains of Spindlin1. Proc. Natl. Acad. Sci. USA, Vol. 109, 17954-17959.
17. Yang, N.#, Li, D.F.#, Feng, L., Xiang, Y., Liu, W.*, Sun, H.* and Wang, D.C.* (2009) Structural Basis for the Tumor Cell Apoptosis-Inducing Activity of an Antitumor Lectin from the Edible Mushroom Agrocybe aegerita. Journal of Molecular Biology, Vol. 387, 694-705.
18. Liu, W.#, Yang, N.#, Ding, J.J., Huang R.H., Hu, Z. and Wang, D.C.* (2005) Structural mechanism governing the quaternary organization of monocot mannose-binding lectin revealed by a novel monomeric structure. Journal of Biological Chemistry, Vol. 280, 14865-14876.
19. Yang, N.#, Tong X.#, Xiang, Y., Sun, H.* and Wang, D.C.* (2005) Molecular character of an antitumour lectin from the edible mushroom Agrocybe aegerita. The Journal of Biochemistry, Vol. 138, 145-150.
20. Yang, N., Tong X., Xiang, Y., Zhang, Y., Sun, H.* and Wang, D.C.* (2005) Crystallization and preliminary crystallographic studies of the recombinant antitumor lectin from the edible mushroom Agrocybe aegerita. Biochimica et Biophysica Acta: Proteins and Proteomics, Vol. 1751, 209-212.