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1. Zhang, Z.#, Chen, H.#, Li, Y., Ge, R., Liu, G., Ali, S., & Zhuang, Y.. (2023). Trait-based approach revealed the seasonal variation of mesozooplankton functional groups in the South Yellow Sea. Marine Life Science & Technology*, 5, 126–140.
2. Zheng, Z.#, Zhuang, Y.#, Chen, H., Ge, R., Li, Y., & Liu, G. (2022). Seasonality shapes community structure and functional group dynamics of zooplankton in Changjiang River estuary and its adjacent waters. Diversity and Distributions*, 28, 2152–2170.
3. Chen, H., Wang, J., Zhuang, Y., Yu, W., & Liu, G. (2022). Reduced Fitness and Elevated Oxidative Stress in the Marine Copepod Tigriopus japonicus Exposed to the Toxic Dinoflagellate Karenia mikimotoi. Antioxidants*, 11(11), 2299.
4. Chen, T., Zhuang, Y., Chen, C., Mao, X., Ge, R., Chen, H., Chen, J., Fu, L., Yang, Z., & Liu, G. (2022). Metabarcoding reveals the differential sensitivity of planktonic microbiome to environmental filtering and biointeraction in Sansha Yongle bluehole. Frontiers in Marine Science*, 9, 1046808.
5. Mao, X., Chen, J., Oosterhout, C., Zhang, H., Liu, G., Zhuang, Y., & Mock, T. (2022). Diversity, prevalence, and expression of cyanase genes (cynS) in planktonic marine microorganisms. The ISME Journal, 16, 602–605.
6. Zhang, Z., Zhuang, Y., Chen, H., Lu, S., Li, Y., Ge, R., Chen, C., & Liu, G. (2021). Effects of Prorocentrum donghaiense bloom on zooplankton functional groups in the coastal waters of the East China Sea. Marine Pollution Bulletin*, 172, 112878.
7. Zhuang, Y., Yang, F., Xu, D., Chen, H., Zhang, H., & Liu, G. (2017). Spliced leader-based analyses reveal the effects of polycyclic aromatic hydrocarbons on gene expression in the copepod Pseudodiaptomus poplesia. Aquatic Toxicology, 183, 114–126.
8. Yang, F., Xu, D., Zhuang, Y., Yi, X., Huang, Y., Chen, H., Lin, S., Campbell, D. A., Sturm, N. R., Liu, G., & Zhang, H. (2015). Spliced leader RNA trans-splicing discovered in copepods. Scientific Reports, 5, 17411.
9. Zhuang, Y., Zhang, H., Hannick, L., & Lin, S. (2015). Metatranscriptome profiling reveals versatile N-nutrient utilization, CO2 limitation, oxidative stress, and active toxin production in an Alexandrium fundyense bloom. Harmful Algae*, 42, 60–70.
10. Zhuang, Y., Zhang, H., & Lin, S. (2013). Polyadenylation of 18S ribosomal RNA in algae. Journal of Phycology*, 49(3), 570–579.
11. Zhuang, Y., Zhang, H., & Lin, S. (2013). Cyclin B gene and its cell cycle-dependent differential expression in the toxic dinoflagellate Alexandrium fundyense Atama Group I/Clade I. Harmful Algae*, 26, 71–79.
12. Lu, W., Zhuang, Y., Zhang, H., Lin, X., & Lin, S. (2014). DNA barcoding species in Alexandrium tamarense complex using ITS and proposing designation of five species. Harmful Algae*, 21, 100–113.
13. Zhang, H., Zhuang, Y., Gill, J., & Lin, S. (2013). Proof that dinoflagellate spliced leader (DinoSL) is a useful hook for fishing dinoflagellate transcripts from mixed microbial samples: Symbiodinium kawagutii as a case study. Protist, 164(4), 510–527.
14. Miranda, L. N., Zhuang, Y., Zhang, H., & Lin, S. (2012). Phylogenetic analysis guided by intragenomic SSU rDNA polymorphism refines classification of “Alexandrium tamarense” species complex. Harmful Algae, 16, 35–48.
15. Lin, S., Zhang, H., Zhuang, Y., Tran, B., & Gill, J. (2010). Spliced leader-based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates. Proceedings of the National Academy of Sciences of the United States of America*, 107(46), 20033–20038.