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Roby, Justin A., Bielefeldt-Ohmann, Helle, Prow, Natalie A., Chang, David C., Hall, Roy A. and Khromykh, Alexander A. (2014) The increased expression of capsid protein in trans enhances production of single-round infectious particles by West Nile virus DNA vaccine candidate. Journal of General Virology, 95 10: 2176-2191. doi:10.1099/vir.0.064121-0 Slonchak, Andrii, Hussain, Mazhar, Torres Morales, Shessy, Asgari, Sassan and Khromykh, Alexander (2014) Expression of mosquito microRNA aae-miR-2940-5p is down-regulated in response to West Nile Virus infection to restrict viral replication. Journal of Virology, 88 15: 8457-8467. doi:10.1128/JVI.00317-14 Roby, Justin A., Pijlman, Gorben P., Wilusz, Jeffrey and Khromykh, Alexander A. (2014) Noncoding subgenomic flavivirus RNA: multiple functions in West Nile Virus pathogenesis and modulation of host responses. Viruses, 6 2: 404-427. doi:10.3390/v6020404 Hoenen, Antje, Gillespie, Leah, Morgan, Garry, van der Heide, Peter, Khromykh, Alexander and Mackenzie, Jason (2014) The West Nile virus assembly process evades the conserved antiviral mechanism of the interferon-induced MxA protein. Virology, 448 104-116. doi:10.1016/j.virol.2013.10.005 Roby, Justin A., Hall, Roy A. and Khromykh, Alexander A. (2013) West Nile virus genome with glycosylated envelope protein and deletion of alpha helixes 1, 2 and 4 in the capsid gene is non-infectious and efficiently secretes sub-viral particles. Journal of Virology, 87 23: 13063-13069. doi:10.1128/JVI.01552-13 Young, Lucy B., Melian, Ezequiel Balmori and Khromykh, Alexander A. (2013) NS1' colocalizes with NS1 and can substitute for NS1 in West Nile virus replication. Journal of Virology, 87 16: 9384-9390. doi:10.1128/JVI.01101-13 Edmonds, Judith, van Grinsven, Erinke, Prow, Natalie, Bosco-Lauth, Angela, Brault, Aaron C., Bowen, Richard A., Hall, Roy and Khromykh, Alexander A. (2013) A novel bacteria-free method for generation of flavivirus infectious DNA by circular polymerase extension reaction allows accurate recapitulation of viral heterogeneity. Journal of Virology, 87 4: 2367-2372. doi:10.1128/JVI.03162-12 Rudd, Penny A., Wilson, Jane, Gardner, Joy, Larcher, Thibaut, Babarit, Candice, Le, Thuy T., Anraku, Itaru, Kumagai, Yutaro, Loo, Yueh-Ming, Gale Jr, Michael, Akira, Shizuo, Khromykh, Alexander A. and Suhrbier, Andreas (2012) Interferon response factors 3 and 7 protect against Chikungunya virus hemorrhagic fever and shock. Journal of Virology, 86 18: 9888-9898. doi:10.1128/JVI.00956-12 Schuessler, Andrea, Funk, Anneke, Lazear, Helen M., Cooper, Daphne A., Torres, Shessy, Daffis, Stephane, Jha, Babal Kant, Kumagai, Yutaro, Takeuchi, Osamu, Hertzog, Paul, Silverman, Robert, Akira, Shizuo, Barton, David J., Diamond, Michael S. and Khromykh, Alexander A. (2012) West Nile virus noncoding subgenomic RNA contributes to viral evasion of the type I interferon-mediated antiviral response. Journal of Virology, 86 10: 5708-5718. doi:10.1128/JVI.00207-12 Frost, Melinda J., Zhang, Jing, Edmonds, Judith H., Prow, Natalie A., Gu, Xingnian, Davis, Rodney, Hornitzky, Christine, Arzey, Kathleen E., Finlaison, Deborah, Hick, Paul, Read, Andrew, Hobson-Peters, Jody, May, Fiona J., Doggett, Stephen L., Haniotis, John, Russell, Richard C., Hall, Roy A., Khromykh, Alexander A. and Kirkland, Peter D. (2012) Characterization of virulent West Nile virus Kunjin Strain, Australia, 2011. Emerging Infectious Diseases, 18 5: 792-800. doi:10.3201/eid1805.111720 Hussain, Mazhar, Torres, Shessy, Schnettler, Esther, Funk, Anneke, Grundhoff, Adam, Pijlman, Gorben P., Khromykh, Alexander A. and Asgari, Sassan (2012) West Nile virus encodes a microRNA-like small RNA in the 3' untranslated region which up-regulates GATA4 mRNA and facilitates virus replication in mosquito cells. Nucleic Acids Research, 40 5: 2210-2223. doi:10.1093/nar/gkr848 Roby, Justin A., Funk, Anneke and Khromykh, Alexander A. (2012). Flavivirus replication and assembly. In Pei-Yong Shi (Ed.), Molecular virology and control of flaviviruses (pp. 21-49) Norfolk, United Kingdom: Caister Academic Press. Audsley, Michelle, Edmonds, Judith, Liu, Wenjun, Mokhonov, Vlad, Mokhonova, Ekaterina, Melian, Ezequeil Balmori, Prow, Natalie, Hall, Roy A. and Khromykh, Alexander A. (2011) Virulence determinants between New York 99 and Kunjin strains of West Nile virus. Virology, 414 1: 63-73. doi:10.1016/j.virol.2011.03.008 Roby, Justin A., Hall, Roy A. and Khromykh, Alexander A. (2011). Nucleic acid-based infectious and pseudoinfectious flavivirus vaccines. In Philip R. Dormitzer, Christian W. Mandl and Rino Rappuoli (Ed.), Replicating vaccines : A new generation (pp. 299-320) Basel, Switzerland: Springer. doi:10.1007/978-3-0346-0277-8_13 Funk, Anneke, Truong, Katherine, Nagasaki, Tomoko, Torres, Shessy, Floden, Nadia, Balmori Melian, Ezequiel, Edmonds, Judy, Dong, Hongping, Shi, Pei-Yong and Khromykh, Alexander A. (2010) RNA structures required for production of subgenomic flavivirus RNA. Journal of Virology, 84 21: 11407-11417. doi:10.1128/JVI.01159-10 Balmori Melian, Ezequiel, Hinzman, Edward, Nagasaki, Tomoko, Firth, Andrew E., Wills, Norma M., Nouwens, Amanda S., Blitvich, Bradley J., Leung, Jason, Funk, Anneke, Atkins, John F., Hall, Roy and Khromykh, Alexander A. (2010) NS1 ' of flaviviruses in the Japanese encephalitis virus serogroup is a product of ribosomal frameshifting and plays a role in viral neuroinvasiveness. Journal of Virology, 84 3: 1641-1647. doi:10.1128/JVI.01979-09