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Dunkley TPJ, et al (2006) Mapping the Arabisopsis organelle proteome. Proc. Natl Acad. Sci. 103 (17): 6518-6523 Hall SL, et al (2009) The organelle proteome of the DT40 Lymphocyte cell line. Mol Cell Proteomics. 8(6):1295-305 Groen AJ et al, (2014) Identification of trans-golgi network proteins in Arabidopsis thaliana root tissue. J. Prot. Res 13(2):763-76 Christoforou et al (2016) A draft map of the mouse pluripotent stem cell spatial proteome. Nature Communications doi:10.1038/ncomms9992 Rees JS, et al (2011) In vivo analysis of proteomes and interactomes using parallel affinity capture (iPAC) coupled to mass spectrometry. Mol Cell Proteomics. 10 (6) M110--002386 Lowe N, Rees JS, Roote J, Ryder E, Armean IM, Johnson G, Drummond E, Spriggs H, Drummond J, Magbanua JP, Naylor H, Sanson B, Bastock R, Huelsmann S, Trovisco V, Landgraf M, Knowles-Barley S, Armstrong JD, White-Cooper H, Hansen C, Phillips RG; UK Drosophila Protein Trap Screening Consortium, Lilley KS, Russell S, St Johnston D. (2014) Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library. Development 141(20):3994-4005. doi: 10.1242/dev.111054. Chen C, Buhl, E, Xu, M, Croset, V, Rees, JS, Lilley KS, Benton, R, Hodge JL, Stanewsky, R. (2015) Drosophila Ionotropic Receptor 25a mediates circadian clock resetting by temperature Nature Nov 18. doi: 10.1038/nature16148 Li XW, et al (2014) New insights into the DT40 B-Cell Receptor cluster using a proteomics proximity labelling assay. J. Biol. Chem.;289(21):14434-47. doi: 10.1074/jbc.M113.529578 Fabre, BF, et al (2016) Analysis of the Drosophila melanogaster proteome dynamics during the embryo earlydevelopment by a combination of label-free proteomics approaches. Proteomics. 2016 Mar 31. doi: 10.1002/pmic.201500482. Bond NJ, et al (2013) Improving qualitative and quantitative performance for MS(E)-based-label-free proteomics. J. Prot Res. 12(6):2340-53. Shliaha PV, et al (2014) Additional precursor purification in isobaric mass tagging experiments by travelling wave ion mobility separation (TWIMS). J. Prot. Res. 13(7):3360-9. doi: 10.1021/pr500220g Mulvey CM, Schr?ter C, Gatto L, Dikicioglu D, Fidaner IB, Christoforou A, Deery MJ, Cho LT, Niakan KK, Martinez-Arias A, Lilley KS. (2015) Dynamic Proteomic Profiling of Extra-Embryonic Endoderm Differentiation in Mouse Embryonic Stem Cells. Stem Cells. 2015 Sep;33(9):2712-25. doi: 10.1002/stem.2067. Epub 2015 Jun 23. Breckels LM, et al (2013) The effect of organelle discovery upon sub-cellular protein localization. J. Prot. 88:129-40 Breckels, LM, et al (2016) Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics. PLoS Comput Biol. 2016 May 13;12(5):e1004920. doi: 10.1371/journal.pcbi.1004920. Gatto L, et al (2014) Mass-spectrometry based spatial proteomics data analysis using pRoloc and pRoloc data. Bioinformatics. 30 (9) 1322-4

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