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RESEARCH ARTICLE (Open Access)

The distribution, habitat preference and population dynamics of the pale field-rat (Rattus tunneyi) at Edel Land, Shark Bay, Western Australia: the role of refuges and refugia in population persistence

Sally O’Neill A B D , Jeff Short https://orcid.org/0000-0002-5392-3517 A C and Mike Calver A
+ Author Affiliations
- Author Affiliations

A Environmental and Conservation Sciences, Murdoch University, South Street, Murdoch, WA 6150, Australia.

B TERN Ecosystem Surveillance, GPO Box 498, Adelaide, SA 5005, Australia.

C Wildlife Research and Management Pty Ltd, PO Box 1360, Kalamunda, WA 6926, Australia.

D Corresponding author. Email: sally.oneill@adelaide.edu.au

Wildlife Research 48(5) 444-457 https://doi.org/10.1071/WR20005
Submitted: 7 January 2020  Accepted: 23 January 2021   Published: 17 May 2021

Journal Compilation © CSIRO 2021 Open Access CC BY

Abstract

Context: The pale field-rat (Rattus tunneyi) is a small native rat that formerly had a wide distribution throughout Australia. It has suffered substantial range contraction since European settlement and is now largely absent from arid and semiarid Australia. In this biome, it was known to persist only at two Western Australian locations: Edel Land, on the south-western shore of Shark Bay, and islands off the Pilbara coast.

Aims: We aimed to establish the extent of the species range at Edel Land, its habitat preference, the temporal stability of its populations with respect to rainfall, and threats to its persistence.

Methods: We trapped at 54 sites to establish distribution and habitat preference, and re-trapped four of these sites at which R. tunneyi was present in each season for 2.5 years to establish trends in abundance.

Key results: Trapping resulted in the capture of 45 R. tunneyi individuals across 17 of 54 sites (4104 trap-nights; 1.1% capture success). Rattus tunneyi typically occupied localised areas of dense shrubland, often in habitats with free water or near-surface moisture from drainage from high dunes allowing denser and taller vegetation and, at some sites, year-round growth of grasses or rushes. Regular re-trapping of four sites in each season (2002 – 2004) suggested a declining population, probably owing to a sequence of dry years.

Key conclusions: Rattus tunneyi at Shark Bay occurred only in localised mesic refuges, apparently dependent on seepage from high dunes generated by major inputs of rainfall from infrequent cyclones or sequences of high-rainfall years.

Implications: This isolated population is likely to be threatened by browsing by feral goats, opening up otherwise densely vegetated habitats of refuge areas, and their trampling of R. tunneyi burrows; by the depletion of grasses from herbivory by European rabbits; and by the long-term impact of a drying climate. It is unlikely to persist without effective on-going management, particularly of the goat population.

Keywords: climate change, irruption, Mus, native rodent, outbreak, refuge, source–sink.


References

Aplin, K. P., Braithwaite, R. W., and Baverstock, P. R. (2008). Pale Field-rat Rattus tunneyi (Thomas, 1904). In ‘The Mammals of Australia’. (Eds S. Van Dyck and R. Strahan.) pp. 698–699. (Reed New Holland: Australia.)

Baynes, A. (1990). The mammals of Shark Bay, Western Australia. In ‘Research in Shark Bay. Report of the France-Australe Bicentenary Expedition Committee’. (Eds P. F. Berry, S. D. Bradshaw, and B. R. Wilson.) pp. 313–325. Western Australian Museum, Perth, Western Australia.

Baynes, A., and McDowell, M. C. (2010). The original mammal fauna of the Pilbara biogeographic region of north-western Australia. Records of the Western Australian Museum 78, 285–298.
The original mammal fauna of the Pilbara biogeographic region of north-western Australia.Crossref | GoogleScholarGoogle Scholar |

Beard, J. S. (1976). ‘The vegetation of the Shark Bay and Edel areas. Western Australia. Map and explanatory memoir. 1:250 000 series.’ (Vegmap Publications: Perth, WA, Australia.)

Braithwaite, R. W., and Griffiths, A. D. (1996). The paradox of Rattus tunneyi: endangerment of a native pest. Wildlife Research 23, 1–21.
The paradox of Rattus tunneyi: endangerment of a native pest.Crossref | GoogleScholarGoogle Scholar |

Braithwaite, R. W., and Muller, W. (1997). Rainfall, groundwater and refuges: predicting extinctions of Australian tropical mammal species. Australian Journal of Ecology 22, 57–67.
Rainfall, groundwater and refuges: predicting extinctions of Australian tropical mammal species.Crossref | GoogleScholarGoogle Scholar |

Breed, W. G. (2008). Sandy Inland Mouse Pseudomys hermannsburgensis. In ‘The Mammals of Australia’. (Eds S. Van Dyck and R. Strahan.) pp. 636–637. (Reed New Holland: Australia.)

Burbidge, A. A., and Abbott, I. J. (2017). Mammals on Western Australian islands: occurrence and preliminary analysis. Australian Journal of Zoology 65, 183–195.
Mammals on Western Australian islands: occurrence and preliminary analysis.Crossref | GoogleScholarGoogle Scholar |

Burbidge, A. A., and Manly, B. J. F. (2002). Mammal extinctions on Australian islands: causes and conservation implications. Journal of Biogeography 29, 465–473.
Mammal extinctions on Australian islands: causes and conservation implications.Crossref | GoogleScholarGoogle Scholar |

Calaby, J. H., and Keith, K. (1974). Mammals. In ‘Fauna survey of the Port Essington District, Cobourg Peninsula, NT, Australia. Technical Paper No. 28’. (Ed. H.J. Frith and J.H. Calaby.) pp. 179–208. (CSIRO Division of Wildlife Research: Canberra, ACT, Australia.)

Clarke, K. R., and Warwick, R. M. (2001). ‘Change in Marine Communities: an Approach to Statistical Analysis and Interpretation.’ (Primer-E: Plymouth, UK.)

Davies, H. F., McCarthy, M. A., Rioli, W., Puruntatameri, J., Roberts, W., Kerinaiua, C., Kerinaula, V., Womatakimi, K. B., Andersen, A. N., and Murphy, B. P. (2018). An experimental test of whether pyrodiversity promotes mammal diversity in a northern Australian savanna. Journal of Applied Ecology 55, 2124–2134.
An experimental test of whether pyrodiversity promotes mammal diversity in a northern Australian savanna.Crossref | GoogleScholarGoogle Scholar |

Davis, J., Pavlova, A., Thompson, R., and Sunnucks, P. (2013). Evolutionary refugia and ecological refuges: key concepts for conserving Australian arid zone freshwater biodiversity under climate change. Global Change Biology 19, 1970–1984.
Evolutionary refugia and ecological refuges: key concepts for conserving Australian arid zone freshwater biodiversity under climate change.Crossref | GoogleScholarGoogle Scholar | 23526791PubMed |

De Bondi, N., White, J. G., Stevens, M., and Cooke, R. (2010). A comparison of the effectiveness of camera trapping and live trapping for sampling terrestrial small-mammal communities. Wildlife Research 37, 456–465.
A comparison of the effectiveness of camera trapping and live trapping for sampling terrestrial small-mammal communities.Crossref | GoogleScholarGoogle Scholar |

Desmond, A., and Chant, A. (2003). Geraldton Sandplains 1 (GS1 - Edel subregion). In ‘A Biodiversity Audit of Western Australia’s 53 Biogeographical Subregions’. (Eds J. E. May, N. L. McKenzie, and S. McKenna.) pp. 252–264. (Department of Conservation and Land Management: Perth, WA, Australia.)

NESP Earth Systems and Climate Change Hub (2018). Climate change and the Shark Bay World Heritage Area: foundations for a climate change adaptation strategy and action plan. Earth Systems and Climate Change Hub Report No. 7, NESP Earth Systems and Climate Change Hub, Australia.

Frank, A. S. K., Johnson, C. N., Fisher, A., Lawes, M. J., Woinarski, J. C. Z., Tuft, K., Radford, I. J., Gordon, I. J., Collis, M., and Legge, S. (2014). Experimental evidence that feral cats cause local extirpation of small mammals in Australia’s tropical savannas. Journal of Applied Ecology 51, 1486–1493.
Experimental evidence that feral cats cause local extirpation of small mammals in Australia’s tropical savannas.Crossref | GoogleScholarGoogle Scholar |

Hammer, Ø., Harper, D. A. T., and Ryan, P. D. (2001). PAST: paleontological statistics software package for education and data analysis. Palaeontologia Electronica 4, 4.

Keppel, G., Van Niel, K. P., Wardell-Johnson, G. W., Yates, C. J., Byrne, M., Mucina, L., Schut, A. G. T., Hopper, S. D., and Franklin, S. E. (2012). Refugia: identifying and understanding safe havens for biodiversity under climate change. Global Ecology and Biogeography 21, 393–404.
Refugia: identifying and understanding safe havens for biodiversity under climate change.Crossref | GoogleScholarGoogle Scholar |

Kitchener, D. J., and Vicker, E. (1981). ‘Catalogue of Modern Mammals in the Western Australian Museum 1895–1981.’ (Western Australian Museum: Perth, WA, Australia.)

Krebs, C. J. (1998). ‘Ecological Methodology.’ (Benjamin/Cummings: Menlo Park, CA, USA.)

Krebs, C. J., and Singleton, G. R. (1993). Indices of condition for small mammals. Australian Journal of Zoology 41, 317–323.
Indices of condition for small mammals.Crossref | GoogleScholarGoogle Scholar |

Leahy, L., Legge, S., Tuft, K., McGregor, H., Barmuta, L. A., Jones, M. E., and Johnson, C. N. (2016). Amplified predation after fire suppresses rodent populations in Australia’s tropical savannas. Wildlife Research 42, 705–716.
Amplified predation after fire suppresses rodent populations in Australia’s tropical savannas.Crossref | GoogleScholarGoogle Scholar |

Legge, S., Kennedy, M. S., Lloyd, R., Murphy, S. A., and Fisher, A. (2011). Rapid recovery of mammal fauna in the central Kimberley, northern Australia, following the removal of introduced herbivores. Austral Ecology 36, 791–799.
Rapid recovery of mammal fauna in the central Kimberley, northern Australia, following the removal of introduced herbivores.Crossref | GoogleScholarGoogle Scholar |

Legge, S., Smith, J. G., James, A., Tuft, K. D., Webb, T., and Woinarski, J. C. Z. (2019). Interactions among threats affect conservation management outcomes: livestock grazing removes the benefits of fire management for small mammals in Australian tropical savannas. Conservation Science and Practice 1, e52.
Interactions among threats affect conservation management outcomes: livestock grazing removes the benefits of fire management for small mammals in Australian tropical savannas.Crossref | GoogleScholarGoogle Scholar |

McCluskey, P. (2008). ‘Shark Bay World Heritage Property Strategic Plan 2008 – 2020.’ (Department of Environment and Conservation: Perth, WA, Australia.)

McGregor, H., Legge, S., Jones, M. E., and Johnson, C. N. (2015). Feral cats are better killers in open habitats, revealed by animal-borne video. PLoS One 10, e0133915.
Feral cats are better killers in open habitats, revealed by animal-borne video.Crossref | GoogleScholarGoogle Scholar | 26288224PubMed |

McKenzie, N. L., Hall, N. J., and Muir, W. P. (2000). Non-volant mammals of the southern Carnarvon Basin, Western Australia. Records of the Western Australian Museum 61, 479–510.
Non-volant mammals of the southern Carnarvon Basin, Western Australia.Crossref | GoogleScholarGoogle Scholar |

Morris, K. (2000). The status and conservation of native rodents in Western Australia. Wildlife Research 27, 405–419.
The status and conservation of native rodents in Western Australia.Crossref | GoogleScholarGoogle Scholar |

Morris, K. (2008) Ash-grey mouse Pseudomys albocinereus. In ‘The Mammals of Australia’. (Eds S. Van Dyck and R. Strahan.) pp. 611–613. (Reed New Holland: Australia.)

Morton, S. R., Short, J., and Barker, R. D. (1995). Refugia for Biological Diversity in Arid and Semi-arid Australia. A report to the Biodiversity Unit of the Department of Environment, Sport, and Territories. Biodiversity Series, Paper No. 4. Department of Environment, Sport, and Territories, Canberra.

Newsome, A. E. (1975). An ecological comparison of the two arid-zone kangaroos of Australia, and their anomalous prosperity since the introduction of ruminant stock to their environment. The Quarterly Review of Biology 50, 389–424.
An ecological comparison of the two arid-zone kangaroos of Australia, and their anomalous prosperity since the introduction of ruminant stock to their environment.Crossref | GoogleScholarGoogle Scholar | 1221459PubMed |

Palmer, R., and Morris, K. D. (2014). A survey for black rats (Rattus rattus) in the Shark Bay communities of Denham, Monkey Mia and Useless Loop. Unpublished report to Department of Parks and Wildlife, Perth, WA, Australia.

Pavey, C. R., Addison, J., Brandle, R., Dickman, C. R., McDonald, P. J., Moseby, K. E., and Young, L. I. (2017). The role of refuges in the persistence of Australian dryland mammals. Biological Reviews of the Cambridge Philosophical Society 92, 647–664.
The role of refuges in the persistence of Australian dryland mammals.Crossref | GoogleScholarGoogle Scholar | 26685752PubMed |

Payne, A. L., Curry, P. J., and Spencer, G. F. (1987). An inventory and condition survey of rangelands in the Carnarvon Basin, Western Australia. Western Australian Department of Agriculture Technical Bulletin No. 73, 478 pp.

Rendall, A. R., Sutherland, D. R., Cooke, R., and White, J. (2014). Camera trapping: a contemporary approach to monitoring invasive rodents in high conservation priority ecosystems. PLoS One 9, e86592.
Camera trapping: a contemporary approach to monitoring invasive rodents in high conservation priority ecosystems.Crossref | GoogleScholarGoogle Scholar | 24599307PubMed |

Reside, A. E., Webergen, J. A., Phillips, B. L., Wardell-Johnson, G. W., Keppel, G., Ferrier, S., Williams, S. E., and Vanderwal, J. (2014). Characteristics of climate change refugia for Australian biodiversity. Austral Ecology 39, 887–897.
Characteristics of climate change refugia for Australian biodiversity.Crossref | GoogleScholarGoogle Scholar |

Robley, A. J., Short, J. C., and Bradley, J. S. (2001). Dietary overlap between the burrowing bettong (Bettongia lesueur) and the European rabbit (Oryctolagus cuniculus) in semi-arid coastal Western Australia. Wildlife Research 28, 341–349.
Dietary overlap between the burrowing bettong (Bettongia lesueur) and the European rabbit (Oryctolagus cuniculus) in semi-arid coastal Western Australia.Crossref | GoogleScholarGoogle Scholar |

Sanders, A., and Harold, G. (1990). ‘Search for the Shark Bay Mouse Pseudomys praeconis at Shark Bay on the Western Australian Mainland.’ (World Wildlife Fund and Department of Conservation and Land Management: Perth, WA, Australia.)

Shepherd, D. P., Beeston, G. R., and Hopkins, A. J. M. (2002). Native Vegetation in Western Australia, Extent, Type and Status. Resource Management Technical Report 249. Department of Agriculture, Western Australia.

Short, J., and Turner, B. (2000). Reintroduction of the burrowing bettong Bettongia lesueur (Marsupialia: Potoroidae) to mainland Australia. Biological Conservation 96, 185–196.
Reintroduction of the burrowing bettong Bettongia lesueur (Marsupialia: Potoroidae) to mainland Australia.Crossref | GoogleScholarGoogle Scholar |

Short, J. C., O’Neill, S., and Richards, J. D. (2018). Irruption and collapse of a population of pale field-rat Rattus tunneyi at Heirisson Prong, Shark Bay, Western Australia. Australian Mammalogy 40, 36–40.
Irruption and collapse of a population of pale field-rat Rattus tunneyi at Heirisson Prong, Shark Bay, Western Australia.Crossref | GoogleScholarGoogle Scholar |

Stokes, V. L. (2013). Trappability of introduced and native rodents in different trap types in coastal forest of south-eastern Australia. Australian Mammalogy 35, 49–53.
Trappability of introduced and native rodents in different trap types in coastal forest of south-eastern Australia.Crossref | GoogleScholarGoogle Scholar |

Stokes, V. L., Banks, P. B., Pech, R. P., and Spratt, D. M. (2009). Competition in an invaded rodent community reveals black rats as a threat to native bush rats in littoral rainforest of south-eastern Australia. Journal of Animal Ecology 46, 1239–1247.
Competition in an invaded rodent community reveals black rats as a threat to native bush rats in littoral rainforest of south-eastern Australia.Crossref | GoogleScholarGoogle Scholar |

Taylor, J. M., and Calaby, J. H. (2004). Seasonal reproductive dynamics in a tropical Australian rodent, Rattus tunneyi (Rodentia: Muridae). Australian Journal of Zoology 52, 159–168.
Seasonal reproductive dynamics in a tropical Australian rodent, Rattus tunneyi (Rodentia: Muridae).Crossref | GoogleScholarGoogle Scholar |

Taylor, J. M., and Horner, B. E. (1973). Reproductive characteristics of wild native Australian Rattus (Rodentia: Muridae). Australian Journal of Zoology 21, 437–475.
Reproductive characteristics of wild native Australian Rattus (Rodentia: Muridae).Crossref | GoogleScholarGoogle Scholar | 4803465PubMed |

Tiver, F. (1994). Vegetation patterns of eastern South Australia: edaphic control and effects of herbivory. Doctoral dissertation, Department of Botany, University of Adelaide, Adelaide, SA, Australia.

Van Dyck, S., and Strahan, R. (2008). ‘The Mammals of Australia.’ (Reed New Holland: Sydney, NSW, Australia.)

Ward-Fear, G., Brown, G. P., Pearson, D. J., and Shine, R. (2017). An invasive tree facilitates the persistence of native rodents on an over-grazed floodplain in tropical Australia. Austral Ecology 42, 385–393.
An invasive tree facilitates the persistence of native rodents on an over-grazed floodplain in tropical Australia.Crossref | GoogleScholarGoogle Scholar |

Watts, C. H. S. (1977). The foods eaten by some Australian rodents (Muridae). Australian Wildlife Research 4, 151–157.
The foods eaten by some Australian rodents (Muridae).Crossref | GoogleScholarGoogle Scholar |

Watts, C. H. S., and Aslin, H. J. (1981). ‘The Rodents of Australia.’ (Angus & Robertson Publishers: Australia.)

Woinarski, J. C. Z. (1992). A survey of the wildlife and vegetation of Purnululu (Bungle Bungle) National Park and adjacent area. Department of Conservation and Land Management, Perth, WA, Australia. Research Bulletin No. 6.

Woinarski, J. C. Z., Braithwaite, R. W., Menkhorst, K. A., Griffin, S., Fisher, A., and Preece, N. (1992). Gradient analysis of the distribution of mammals in Stage III of Kakadu National Park, with a review of the distribution patterns of mammals across north-western Australia. Wildlife Research 19, 233–262.
Gradient analysis of the distribution of mammals in Stage III of Kakadu National Park, with a review of the distribution patterns of mammals across north-western Australia.Crossref | GoogleScholarGoogle Scholar |

Woinarski, J. C. Z., Burbidge, A. A., and Harrison, P. L. (2014). ‘The action plan for Australian mammals 2012.’ (CSIRO Publishing: Melbourne, Vic., Australia.)

Wyrwoll, K. H., Courtney, J., and Sandercock, P. (2000). The climatic environment of the Carnarvon Basin, Western Australia. Records of the Western Australian Museum 61, 13–27.
The climatic environment of the Carnarvon Basin, Western Australia.Crossref | GoogleScholarGoogle Scholar |