-
Caspase-9 Is a Positive Regulator of Osteoblastic Cell Migration Identified by diaPASEF Proteomics J. Proteome Res. (IF 4.4) Pub Date : 2024-03-18 Kamila Říhová, Petr Lapčík, Barbora Veselá, Lucia Knopfová, David Potěšil, Jana Pokludová, Jan Šmarda, Eva Matalová, Pavel Bouchal, Petr Beneš
-
Integrated Metabolomics and Proteomics of Symptomatic and Early Presymptomatic States of Colitis J. Proteome Res. (IF 4.4) Pub Date : 2024-03-18 Elee Shimshoni, Inna Solomonov, Irit Sagi, Veronica Ghini
-
Single Cell Analysis of Proteoforms J. Proteome Res. (IF 4.4) Pub Date : 2024-03-18 Pei Su, Michael A. R. Hollas, Fatma Ayaloglu Butun, Vijaya Lakshmi Kanchustambham, Stanislav Rubakhin, Namrata Ramani, Joseph B. Greer, Bryan P. Early, Ryan T. Fellers, Michael A. Caldwell, Jonathan V. Sweedler, Jared O. Kafader, Neil L. Kelleher
-
Molecular Insights of Cholestasis in MDR2 Knockout Murine Liver Organoids J. Proteome Res. (IF 4.4) Pub Date : 2024-03-15 Irene Blázquez-García, Laura Guerrero, Cristina Cacho-Navas, Nabil Djouder, Jaime Millan, Alberto Paradela, Lorena Carmona-Rodríguez, Fernando J. Corrales
-
MS2Rescore 3.0 Is a Modular, Flexible, and User-Friendly Platform to Boost Peptide Identifications, as Showcased with MS Amanda 3.0 J. Proteome Res. (IF 4.4) Pub Date : 2024-03-16 Louise M. Buur, Arthur Declercq, Marina Strobl, Robbin Bouwmeester, Sven Degroeve, Lennart Martens, Viktoria Dorfer, Ralf Gabriels
-
Lipidome Unsaturation Affects the Morphology and Proteome of the Drosophila Eye J. Proteome Res. (IF 4.4) Pub Date : 2024-03-14 Mukesh Kumar, Canan Has, Khanh Lam-Kamath, Sophie Ayciriex, Deepshe Dewett, Mhamed Bashir, Clara Poupault, Kai Schuhmann, Henrik Thomas, Oskar Knittelfelder, Bharath Kumar Raghuraman, Robert Ahrends, Jens Rister, Andrej Shevchenko
-
Cross-Validation of Metabolic Phenotypes in SARS-CoV-2 Infected Subpopulations Using Targeted Liquid Chromatography–Mass Spectrometry (LC-MS) J. Proteome Res. (IF 4.4) Pub Date : 2024-03-14 Luke Whiley, Nathan G. Lawler, Annie Xu Zeng, Alex Lee, Sung-Tong Chin, Maider Bizkarguenaga, Chiara Bruzzone, Nieves Embade, Julien Wist, Elaine Holmes, Oscar Millet, Jeremy K. Nicholson, Nicola Gray
-
O-Glycome Profiling of Breast Cancer Cell Lines to Understand Breast Cancer Brain Metastasis J. Proteome Res. (IF 4.4) Pub Date : 2024-03-14 Sherifdeen Onigbinde, Wenjing Peng, Akhila Reddy, Byeong Gwan Cho, Mona Goli, Joy Solomon, Moyinoluwa Adeniyi, Judith Nwaiwu, Mojibola Fowowe, Oluwatosin Daramola, Waziha Purba, Yehia Mechref
-
Affinity Purification-Mass Spectrometry and Single Fiber Physiology/Proteomics Reveals Mechanistic Insights of C18ORF25 J. Proteome Res. (IF 4.4) Pub Date : 2024-03-13 Yaan-Kit Ng, Ronnie Blazev, James W. McNamara, Mriga Dutt, Jeffrey Molendijk, Enzo R. Porrello, David A. Elliott, Benjamin L. Parker
-
Fit for Purpose Approach To Evaluate Detection of Amino Acid Substitutions in Shotgun Proteomics J. Proteome Res. (IF 4.4) Pub Date : 2024-03-13 Taylor J. Lundgren, Patricia L. Clark, Matthew M. Champion
-
Proteomic Profiling of Messenger Ribonucleoproteins in Mouse Tissues Based on Formaldehyde Cross-Linking J. Proteome Res. (IF 4.4) Pub Date : 2024-03-12 Jiankun Wang, Jialin Liu, Rongbing Huang, Tianyu Chu, Qi Tang, Xing Chen
-
Sex-Specific Alterations in Placental Proteomics Induced by Intrauterine Hyperglycemia J. Proteome Res. (IF 4.4) Pub Date : 2024-03-12 Zhuo-ran Ren, Si-si Luo, Xue-yun Qin, He-feng Huang, Guo-lian Ding
-
Cyanobacterial Proteomics: Diversity and Dynamics J. Proteome Res. (IF 4.4) Pub Date : 2024-03-12 Rupanshee Srivastava, Nidhi Singh, Tripti Kanda, Sadhana Yadav, Shivam Yadav, Neelam Atri
-
Accelerating Proteomics Using Broad Specificity Proteases J. Proteome Res. (IF 4.4) Pub Date : 2024-03-08 Xuehui Jiang, Darien Yeung, Yang Liu, Victor Spicer, Havva Afshari, Ying Lao, Francis Lin, Oleg Krokhin, René P. Zahedi
-
Tissue Usage Preference and Intrinsically Disordered Region Remodeling of Alternative Splicing Derived Proteoforms in the Heart J. Proteome Res. (IF 4.4) Pub Date : 2024-03-08 Boomathi Pandi, Stella Brenman, Alexander Black, Dominic C. M. Ng, Edward Lau, Maggie P. Y. Lam
-
Recent Advancements in Subcellular Proteomics: Growing Impact of Organellar Protein Niches on the Understanding of Cell Biology J. Proteome Res. (IF 4.4) Pub Date : 2024-03-07 Vanya Bhushan, Aleksandra Nita-Lazar
-
Comparison of N-Glycopeptide to Released N-Glycan Abundances and the Influence of Glycopeptide Mass and Charge States on N-Linked Glycosylation of IgG Antibodies J. Proteome Res. (IF 4.4) Pub Date : 2024-03-07 Concepcion A. Remoroza, Meghan C. Burke, Tytus D. Mak, Sergey L. Sheetlin, Yuri A. Mirokhin, Brian T. Cooper, Zachary C. Goecker, Mark S. Lowenthal, Xiaoyu Yang, Guanghui Wang, Dmitrii V. Tchekhovskoi, Stephen E. Stein
-
Single Isotopologue for In-Sample Calibration and Absolute Quantitation by LC-MS/MS J. Proteome Res. (IF 4.4) Pub Date : 2024-03-06 Soroush Torkamannejad, Ge Chang, Fabusuyi A. Aroge, Bingyun Sun
-
Recent Contributions of Proteomics to Our Understanding of Reversible Nε-Lysine Acylation in Bacteria J. Proteome Res. (IF 4.4) Pub Date : 2024-03-05 Liya Popova, Rachel A. Carr, Valerie J. Carabetta
-
Comprehensive Proteomics Analysis of the Hemolymph Composition of Sugar-Fed Aedes aegypti Female and Male Mosquitoes J. Proteome Res. (IF 4.4) Pub Date : 2024-03-05 Patricia H. Alvarenga, Thiago Luiz Alves e Silva, Motoshi Suzuki, Glenn Nardone, Pedro Cecilio, Joel Vega-Rodriguez, Jose M.C. Ribeiro, John F. Andersen
-
Quantitative Pattern of hPTMs by Mass Spectrometry-Based Proteomics with Implications for Triple-Negative Breast Cancer J. Proteome Res. (IF 4.4) Pub Date : 2024-03-05 Chunyan Liu, Mengying Xu, Wan Li, Xiao Cao, Yan Wang, Haoran Chen, Tianqi Zhang, Meiyan Lu, Hui Xie, Yun Chen
-
Interactome Analysis of ClpX Reveals Its Regulatory Role in Metabolism and Photosynthesis in Cyanobacteria J. Proteome Res. (IF 4.4) Pub Date : 2024-03-01 Xin Liu, Fangfang Cai, Yumeng Zhang, Xuan Luo, Li Yuan, Haiyan Ma, Mingkun Yang, Feng Ge
-
EndoGenius: Optimized Neuropeptide Identification from Mass Spectrometry Datasets J. Proteome Res. (IF 4.4) Pub Date : 2024-03-01 Lauren Fields, Nhu Q. Vu, Tina C. Dang, Hsu-Ching Yen, Min Ma, Wenxin Wu, Mitchell Gray, Lingjun Li
-
Regional Differences in the Small Intestinal Proteome of Control Mice and of Mice Lacking Lysosomal Acid Lipase J. Proteome Res. (IF 4.4) Pub Date : 2024-02-29 Valentina Bianco, Monika Svecla, Giovanni Battista Vingiani, Dagmar Kolb, Birgit Schwarz, Martin Buerger, Giangiacomo Beretta, Giuseppe Danilo Norata, Dagmar Kratky
-
Pilot Evaluation of the Long-Term Reproducibility of Capillary Zone Electrophoresis–Tandem Mass Spectrometry for Top-Down Proteomics of a Complex Proteome Sample J. Proteome Res. (IF 4.4) Pub Date : 2024-02-28 Seyed Amirhossein Sadeghi, Wenrong Chen, Qianyi Wang, Qianjie Wang, Fei Fang, Xiaowen Liu, Liangliang Sun
-
IsoForma: An R Package for Quantifying and Visualizing Positional Isomers in Top-Down LC-MS/MS Data J. Proteome Res. (IF 4.4) Pub Date : 2024-02-29 David J. Degnan, Logan A. Lewis, Lisa M. Bramer, Lee Ann McCue, James J. Pesavento, Mowei Zhou, Aivett Bilbao
-
Potential of Targeting TDO2 as the Lung Adenocarcinoma Treatment J. Proteome Res. (IF 4.4) Pub Date : 2024-02-29 Er Jin, Zhidong Yin, Xiuxiu Zheng, Chenhong Yan, Kai Xu, Fouejio Yemele Eunice, Yue Gao
-
Multiomics Characterization of a Less Invasive Microfluidic-Based Cell Sorting Technique J. Proteome Res. (IF 4.4) Pub Date : 2024-02-28 Feroza K. Choudhury, Viji Premkumar, Jana Zecha, Jonathan Boyd, Andrew S. Gaynor, Zengli Guo, Tom Martin, Raffaello Cimbro, Erik L. Allman, Sonja Hess
-
SpaceANOVA: Spatial Co-occurrence Analysis of Cell Types in Multiplex Imaging Data Using Point Process and Functional ANOVA J. Proteome Res. (IF 4.4) Pub Date : 2024-02-28 Souvik Seal, Brian Neelon, Peggi M. Angel, Elizabeth C. O’Quinn, Elizabeth Hill, Thao Vu, Debashis Ghosh, Anand S. Mehta, Kristin Wallace, Alexander V. Alekseyenko
-
Multiomics Evaluation of Human iPSCs and iPSC-Derived Neurons J. Proteome Res. (IF 4.4) Pub Date : 2024-02-28 Gwang Bin Lee, Wan Nur Atiqah binti Mazli, Ling Hao
-
A Simplified Proteomics LC-MRM-MS Assay for Determination of apoE Genotypes in Plasma Samples J. Proteome Res. (IF 4.4) Pub Date : 2024-02-27 Deema O. Qasrawi, Abdulhameed Al-Ghabkari, Rania M. Khan, Evgeniy V. Petrotchenko, Manuel Montero-Odasso, Christoph H. Borchers
-
Gas-Phase Fractionation Data-Independent Acquisition Analysis of 3D Cocultured Spheroid Tumor Model Reveals Altered Translational Processes and Signaling Using Proteomics J. Proteome Res. (IF 4.4) Pub Date : 2024-02-27 Ariana E. Shannon, Claire E. Boos, Brian C. Searle, Amanda B. Hummon
-
Veneer Is a Webtool for Rapid, Standardized, and Transparent Interpretation, Annotation, and Reporting of Mammalian Cell Surface N-Glycocapture Data J. Proteome Res. (IF 4.4) Pub Date : 2024-02-27 Linda Berg Luecke, Roneldine Mesidor, Jack Littrell, Morgan Carpenter, Melinda Wojtkiewicz, Rebekah L. Gundry
-
Tandem Mass Tag-Labeled Quantitative Proteome Analyses Identify C1R and A2M as Novel Serum Biomarkers in Pregnant Women with Obstructive Sleep Apnea J. Proteome Res. (IF 4.4) Pub Date : 2024-02-26 Qiang Zhang, Yuanyi Yue, Xueqing Wang, Hong Cui, Yishu Liu, Man Gao, Tong Liu, Li Xiao
-
Quantitative Metabolomics and Lipoprotein Analysis of PDAC Patients Suggests Serum Marker Categories for Pancreatic Function, Pancreatectomy, Cancer Metabolism, and Systemic Disturbances J. Proteome Res. (IF 4.4) Pub Date : 2024-02-26 Gyuntae Bae, Georgy Berezhnoy, Alejandra Flores, Claire Cannet, Hartmut Schäfer, Marc H. Dahlke, Patrick Michl, Markus W. Löffler, Alfred Königsrainer, Christoph Trautwein
-
Quantified Metabolomics and Lipidomics Profiles Reveal Serum Metabolic Alterations and Distinguished Metabolites of Seven Chronic Metabolic Diseases J. Proteome Res. (IF 4.4) Pub Date : 2024-02-26 Yuqing Zhang, Hui Zhao, Jinhui Zhao, Wangjie Lv, Xueni Jia, Xin Lu, Xinjie Zhao, Guowang Xu
-
Differential Protein Expression in Set5p-Mediated Acetic Acid Stress Response and Novel Targets for Engineering Yeast Stress Tolerance J. Proteome Res. (IF 4.4) Pub Date : 2024-02-23 Ming-Ming Zhang, Bing Yuan, Ya-Ting Wang, Feng-Li Zhang, Chen-Guang Liu, Xin-Qing Zhao
-
Proteomics-Based Identification of Potential Therapeutic Targets of Artesunate in a Lupus Nephritis MRL/lpr Mouse Model J. Proteome Res. (IF 4.4) Pub Date : 2024-02-23 Qiong Wen, Cong Wang, Dongni Chen, Ning Luo, Jinjin Fan, Yi Zhou, Xueqing Yu, Wei Chen
-
Multiomics Approach Reveals Serum Biomarker Candidates for Congenital Zika Syndrome J. Proteome Res. (IF 4.4) Pub Date : 2024-02-23 Patricia Sosa-Acosta, Mauricio Quiñones-Vega, Jéssica de S. Guedes, Danielle Rocha, Letícia Guida, Zilton Vasconcelos, Fábio C. S. Nogueira, Gilberto B. Domont
-
Multiomics Signatures of Coagulopathy in a Polytrauma Swine Model Contrasted with Severe Multisystem Injured Patients J. Proteome Res. (IF 4.4) Pub Date : 2024-02-22 Ian S. LaCroix, Ernest E. Moore, Alexis Cralley, Francesca I. Cendali, Monika Dzieciatkowska, Patrick Hom, Sanchayita Mitra, Mitchell Cohen, Christopher Silliman, Kirk C. Hansen, Angelo D’Alessandro
-
Correction to “The Curiosity of the Young” J. Proteome Res. (IF 4.4) Pub Date : 2024-02-22 John R. Yates, III
Mowei Zhou (Zhejiang University) was inadvertently left off the list in this Editorial but was meant to be included as part of our 2024 Rising Stars. This article has not yet been cited by other publications.
-
Longitudinal Transcriptomic, Proteomic, and Metabolomic Response of Citrus sinensis to Diaphorina citri Inoculation of Candidatus Liberibacter asiaticus J. Proteome Res. (IF 4.4) Pub Date : 2024-02-19 Rachel L. Lombardi, John S. Ramsey, Jaclyn E. Mahoney, Michael J. MacCoss, Michelle L. Heck, Carolyn M. Slupsky
-
Exploring Andean High-Altitude Lake Extremophiles through Advanced Proteotyping J. Proteome Res. (IF 4.4) Pub Date : 2024-02-20 Katharina Runzheimer, Clément Lozano, Diana Boy, Jens Boy, Roberto Godoy, Francisco J. Matus, Denise Engel, Bruno Pavletic, Stefan Leuko, Jean Armengaud, Ralf Moeller
-
PRMT7-Dependent Transcriptional Activation of Hmgb2 Aggravates Severe Acute Pancreatitis by Promoting Acsl1-Induced Ferroptosis J. Proteome Res. (IF 4.4) Pub Date : 2024-02-20 Minghua Su, Feng Chen, Dong Han, Menglong Song, Yifan Wang
-
Proteomic Analysis Identifies GSN as a Noninvasive Circulating Serum Biomarker for Predicting Early Recurrence of Hepatocellular Carcinoma J. Proteome Res. (IF 4.4) Pub Date : 2024-02-19 En Hu, Tao Yang, Linsheng Cai, Jiahe Ouyang, Fei Wang, Zongman Li, Yingchao Wang, Xiaohua Xing, Xiaolong Liu
-
Leveraging Cross-Linking Mass Spectrometry for Modeling Antibody–Antigen Complexes J. Proteome Res. (IF 4.4) Pub Date : 2024-02-19 Andrea Di Ianni, Alessio Di Ianni, Kyra Cowan, Luca M. Barbero, Federico Riccardi Sirtori
-
Identification and Characterization of CC-AMP1-like and CC-AMP2-like Peptides in Capsicum spp. J. Proteome Res. (IF 4.4) Pub Date : 2024-02-17 Kevin D. Culver, Patric W. Sadecki, Jessica K. Jackson, Zoe A. Brown, Megan E. Hnilica, Jingyun Wu, Lindsey N. Shaw, Andrew J. Wommack, Leslie M. Hicks
-
Comparative Proteomic Analysis of Aqueous Humor Reveals Biochemical Disparities in the Eyes of High Myopic Patients J. Proteome Res. (IF 4.4) Pub Date : 2024-02-17 Jingxiao Du, Dandan Liu, Wenkai Zhou, Tianyu Ye, Chaoyang Zhang, Tianwei Qian, Jingfa Zhang, Zhihua Zhang
-
Proteomic Profiling of Dilated Cardiomyopathy Plasma Samples ─ Searching for Biomarkers with Potential to Predict the Outcome of Therapy J. Proteome Res. (IF 4.4) Pub Date : 2024-02-16 Jana Klimentova, Pavel Rehulka, Jiri Stulik, Vera Vozandychova, Helena Rehulkova, Ivana Jurcova, Marie Lazarova, Renata Aiglova, Jiri Dokoupil, Juraj Hrecko, Radek Pudil
-
Chromatograms and Mass Spectra of High-Mannose and Paucimannose N-Glycans for Rapid Isomeric Identifications J. Proteome Res. (IF 4.4) Pub Date : 2024-02-16 Chia Yen Liew, Jien-Lian Chen, Yen-Ting Lin, Hong-Sheng Luo, An-Ti Hung, Bryan John Abel Magoling, Hock-Seng Nguan, Charles Pin-Kuang Lai, Chi-Kung Ni
-
Site-Specific Glycosylation Analysis of Murine and Human Fcγ Receptors Reveals High Heterogeneity at Conserved N-Glycosylation Site J. Proteome Res. (IF 4.4) Pub Date : 2024-02-16 Carlos H. Pavan, Zaraah Abdoollah, Daniel E. Marrero Roche, Holly R. Ryan, Erika Moore, Kevin Brown Chandler
-
Discovery of Species-Specific Proteotypic Peptides To Establish a Spectral Library Platform for Identification of Nontuberculosis Mycobacteria from Mass Spectrometry-Based Proteomics J. Proteome Res. (IF 4.4) Pub Date : 2024-02-15 Chinmaya Narayana Kotimoole, Vadageri Krishnamurthy Ramya, Parvinder Kaur, Norbert Reiling, Radha Krishan Shandil, Shridhar Narayanan, Trude Helen Flo, Thottethodi Subrahmanya Keshava Prasad
-
ChipFilter: Microfluidic-Based Comprehensive Sample Preparation Methodology for Microbial Consortia J. Proteome Res. (IF 4.4) Pub Date : 2024-02-14 Ranjith Kumar Ravi Kumar, Massamba Mbacke Ndiaye, Iman Haddad, Joelle Vinh, Yann Verdier
-
LFQRatio: A Normalization Method to Decipher Quantitative Proteome Changes in Microbial Coculture Systems J. Proteome Res. (IF 4.4) Pub Date : 2024-02-14 Mengxun Shi, Caroline A. Evans, Josie L. McQuillan, Josselin Noirel, Jagroop Pandhal
-
Nontargeted Plasma Proteomic Analysis of Renal Disease and Pulmonary Hypertension in Patients with Sickle Cell Disease J. Proteome Res. (IF 4.4) Pub Date : 2024-02-14 Melanie E. Garrett, Matthew W. Foster, Marilyn J. Telen, Allison E. Ashley-Koch
-
DSBSO-Based XL-MS Analysis of Breast Cancer PDX Tissues to Delineate Protein Interaction Network in Clinical Samples J. Proteome Res. (IF 4.4) Pub Date : 2024-02-09 Fenglong Jiao, Clinton Yu, Andrew Wheat, Lijun Chen, Tung-Shing Mamie Lih, Hui Zhang, Lan Huang
-
Comparing the Extraction Performance in Mouse Plasma of Different Biphasic Methods for Polar and Nonpolar Compounds J. Proteome Res. (IF 4.4) Pub Date : 2024-02-06 Friederike Gutmann, Raphaela Fritsche-Guenther, Daniela B. Dias, Jennifer A. Kirwan
-
A Simplified Label-Free Method for Proteotyping Sets of Six Isolates in a Single Liquid Chromatography-High-Resolution Tandem Mass Spectrometry Analysis J. Proteome Res. (IF 4.4) Pub Date : 2024-02-07 Madisson Chabas, Jean Armengaud, Béatrice Alpha-Bazin
-
High-Throughput Extracellular Matrix Proteomics of Human Lungs Enabled by Photocleavable Surfactant and diaPASEF J. Proteome Res. (IF 4.4) Pub Date : 2024-02-05 Elizabeth F. Bayne, Kevin M. Buck, Anna G. Towler, Yanlong Zhu, Melissa R. Pergande, Tianhua Zhou, Scott Price, Kalina J. Rossler, Vanessa Morales-Tirado, Sarah Lloyd, Fei Wang, Yupeng He, Yu Tian, Ying Ge
-
Serum Olink Proteomics-Based Identification of Protein Biomarkers Associated with the Immune Response in Ischemic Stroke J. Proteome Res. (IF 4.4) Pub Date : 2024-02-06 Tian Zhao, Jingjing Zeng, Ruijie Zhang, Weinv Fan, Qiongfeng Guan, Han Wang, Liyuan Pu, Yannan Jiang, Huiqun Yang, Xiaokun Wang, Liyuan Han