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Discovery and Optimization of Pyrrolopyrimidine Derivatives as Selective Disruptors of the Perinucleolar Compartment, a Marker of Tumor Progression toward Metastasis
Journal of Medicinal Chemistry ( IF 7.3 ) Pub Date : 2022-06-13 , DOI: 10.1021/acs.jmedchem.2c00204
Kevin J Frankowski 1, 2 , Samarjit Patnaik 3 , Chen Wang 4 , Noel Southall 3 , Dipannita Dutta 3 , Soumitta De 5 , Dandan Li 5 , Christopher Dextras 3 , Yi-Han Lin 3 , Marthe Bryant-Connah 3 , Danielle Davis 3 , Feijun Wang 2 , Leah M Wachsmuth 3 , Pranav Shah 3 , Jordan Williams 3 , Md Kabir 3 , Edward Zhu 3 , Bolormaa Baljinnyam 3 , Amy Wang 3 , Xin Xu 3 , John Norton 4 , Marc Ferrer 3 , Steve Titus 3 , Anton Simeonov 3 , Wei Zheng 3 , Lesley A Mathews Griner 3 , Ajit Jadhav 3 , Jeffrey Aubé 1, 2 , Mark J Henderson 3 , Udo Rudloff 5 , Frank J Schoenen 1 , Sui Huang 4 , Juan J Marugan 3
Affiliation  

The perinucleolar compartment (PNC) is a dynamic subnuclear body found at the periphery of the nucleolus. The PNC is enriched with RNA transcripts and RNA-binding proteins, reflecting different states of genome organization. PNC prevalence positively correlates with cancer progression and metastatic capacity, making it a useful marker for metastatic cancer progression. A high-throughput, high-content assay was developed to identify novel small molecules that selectively reduce PNC prevalence in cancer cells. We identified and further optimized a pyrrolopyrimidine series able to reduce PNC prevalence in PC3M cancer cells at submicromolar concentrations without affecting cell viability. Structure–activity relationship exploration of the structural elements necessary for activity resulted in the discovery of several potent compounds. Analysis of in vitro drug-like properties led to the discovery of the bioavailable analogue, metarrestin, which has shown potent antimetastatic activity with improved survival in rodent models and is currently being evaluated in a first-in-human phase 1 clinical trial.

中文翻译:

吡咯并嘧啶衍生物作为核仁周室选择性干扰物的发现和优化,这是肿瘤向转移方向发展的标志物

核仁周室 (PNC) 是在核仁外围发现的动态亚核体。PNC 富含 RNA 转录物和 RNA 结合蛋白,反映了基因组组织的不同状态。PNC 患病率与癌症进展和转移能力呈正相关,使其成为转移性癌症进展的有用标志物。开发了一种高通量、高含量的检测方法来鉴定选择性降低癌细胞中 PNC 患病率的新型小分子。我们确定并进一步优化了吡咯并嘧啶系列,该系列能够在亚微摩尔浓度下降低 PC3M 癌细胞中的 PNC 患病率,而不会影响细胞活力。对活性所必需的结构元素的构效关系探索导致发现了几种有效的化合物。分析体外药物样特性导致了生物可利用类似物metarrestin的发现,该类似物在啮齿动物模型中显示出有效的抗转移活性并提高了存活率,目前正在首次人体1期临床试验中进行评估。
更新日期:2022-06-13
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