（一）独立后前代表性论文：
2025年
1. Feng, S. #; Huang, M.; Quan, Y.; Sun, L.; Lin, J.; Zhang, D.; Wei, X.; Wang, Z.; Ma, X.; Wang, S.; Yu, J.; Jia, W.; Wei, D.; Feng, G.; Xu, M.; Deng, Z.; Zhang, Q.*; The Spike 486 site is a key immune evasion point and a determinant of the immunogenicity of the RBD-Dimer mRNA vaccine against SARS-CoV-2 variants. Virology; 2025, 610:110612; DOI: https://doi.org/10.1016/j.virol.2025.110612.
2. Sun, L. #; Huang, M.#; Feng, S. #; Zhang, W.; Quan, Y.; Chen, R.; Chen, X.; Zhang, D.; Yuan, B.; Zhao, J.; Wang, Z.; Lin, J.; Peng, W.; Ludlow, M.; Zhang, Q.*; Developing an eVLP mRNA vaccine for respiratory syncytial virus with superior pre-fusion targeting humoral responses. Journal of Virology; 2025, 0:e01209-25; DOI: https://doi.org/10.1128/jvi.01209-25.
3. Li, H. #; Huang, M. #; Feng, S. #; Li, W. #; Wei, D. #; Li, X. #; Chen, L.; Quan, Y.; Gu, H.; Jiang, T.; Liu, Y.; Lu, J.; Song, W.; Zhang, X.; Yang, Y.; Pan, Q.; Yu, J.; Lou, H.; To, K. K.; Jia, W.*; Lin, J.*; Zhang, Q.*; Preclinical Evaluation of an mRNA Vaccine Developed from the First Human Isolate of Bovine H5N1. Cell Reports Medicine (Revision submitted).
4. Huang, M#.; Quan, Y#.; Chen, R#.; Song, W.; Feng, S.; Lin, J.; Gu, H.; Lu, J.; Li, W.; Pan, Q.; Li, H.; Sun, L.; Jiang, T.; Zhang, B.; Wei, D.; Yang, C.; Liu, D.; Wang, Z.; Jia, W.; Zhao, J.; Yu, J.; Li, X.; Yu, X.; Yue, X.; Li, C.; Bu, F.; Miao, Z.; Zhang, Q.*. saRNA Vaccines Enhance Humoral Immunity versus Conventional mRNA and Provide Dose-Sparing Protection Against Influenza B Virus. Emerging Mirobes and Infections (Manuscripts Submitted).
5. Lou, H*#.; Zheng, J.#; Yue, C.#; Zhang, M.#; Bao, Y.#; Chen, Y.#; Yang, Y.; Li, B.; Shi, Y.; Chai, Y.; Chen, X.; Liang, Z.; Yao, R.; Mo, Y.; Wang, L.; Quan, Y.; Liu, S.; Li, Z.; Hu, Y.; Wang, C.; Zhang, Q.; Wang, X.*; Cao, X.* AI agent maps the cellular origin and structural basis of pan-viral neutralization across ageing and infection. Nature Biotechnology (Manuscripts Submitted)
6. Wang, S#.; Li, W.; Wen, J.; Wang, L.; Tiwari, S.; Bray, W.; Wu, L.; Li, N.; Hui, H.; Clark, A.; Zhang, Q.; Zhang, L.; Carlin, A.; Rana, T.*. Interferon-Inducible Guanylate-Binding Protein 5 Inhibits Replication of Multiple Viruses by Binding to the Oligosaccharyltransferase Complex and Inhibiting Glycoprotein Maturation. mBio; 2025 0:e02930-25; https://doi.org/10.1128/mbio.02930-25.
7.Yang, Q. #,*; Xue, B. #; Qiu, X. #; Yang, K. #; Tang, J. #; Zhou, A.; Zou, L.; Mao, Y.; Zhong, J.; Zhou, Y.; Zhang, W.; Zhang, Q.; Xiao, Q.; Tang, W.; Li, Z.; Ye, W.; Zou, G.; Peng, W. *; Shang, J. *; Xu, X. *; Li, Y. *; Chen, X. * Molecular mechanism of resistance to lonafarnib conferred by mutations in the cysteine-rich region of respiratory syncytial virus fusion glycoprotein and discovery of a lonafarnib-derived antiviral PROTAC. Journal of Virology；2025 Dec 9:e0148725. doi: 10.1128/jvi.01487-25 .
2024年
1. Zhang, Q.#; Tiwari, S. K.#; Wen, J. ; Wang, S; Wang, L.; Li, W.; Zhang, L.; Rawling, S; Cheng, Y; Jokerst, J; and Rana, T. M*.；Induction of neutralizing antibodies against SARS-CoV-2 variants by a multivalent mRNA-lipid nanoparticle vaccine encoding SARS-CoV-2/SARS-CoV Spike protein receptor-binding domains in mice. Plos one; 2024; 19 (4), e0300524.
2023年
1. Wang, W. #; Sun, L.; Huang, M.; Quan, Y.; Jiang, T, Miao, Z.*; Zhang, Q.*; Regulatory circular RNAs in viral diseases: applications in diagnosis and therapy. RNA biology; 2023; 20 (1), 847-858.
（二）独立前代表性论文：
2022年
1、Zhang, Q.#; Wang, S.#, Li, W.; Yau, E.; Hui, H.; Singh, P.; Achuthan, V.; Karris, M. A. Y.; Engelman, A.; Rana, T. M.*.；Genome-wide CRISPR/Cas9 transcriptional activation screen identifies a histone acetyltransferase inhibitor complex as a regulator of HIV-1 integration；Nucleic Acids Research；2022；50(12): 6687–6701.
2021年
1、Zhang, Q.#; Kang, Y.; Wang, S.; Gonzalez, G. M.; Li, W.; Hui, H.; Wang, Y.; Rana, T. M*.；HIV reprograms host m6Am RNA methylome by viral Vpr protein-mediated degradation of PCIF1；Nature Communications；2021；12(1):5543.
2020年
1、Wang, S.#; Zhang, Q.#; Hui, H.; Agrawal, K.; Karris, M. A. Y.; Rana, T. M.*；An atlas of immune cell exhaustion in HIV-infected individuals revealed by single-cell transcriptomics；Emerging Microbes & Infections；2020; 9(1):2333-2347.
2、Wang, S.#; Zhang, Q.#; Tiwari, S. K.#; Lichinchi, G.; Yau, E. H.; Hui, H.; Li, W.; Furnari, F.; Rana, T. M.*；Integrin αvβ5 internalizes Zika virus during neural stem cells infection and provides a promising target for antiviral therapy；Cell Reports；2022；30,1–15.
2019年
1、Zhang, Q.#; Chao, T. C.#; Patil, V. S.#; Qin, Y.; Tiwari, S. K.; Chiou, J.; Dobin, A.; Tsai, C. M.; Li, Z.; Dang, J.; Gupta, S.; Urdahl, K.; Nizet, V.; Gingeras, T. R.; Gaulton, K. J.; Rana, T. M.*.；The long noncoding RNA ROCKI regulates inflammatory gene expression；Embo Journal; 2019；38:e100041.
2、Chao, T. C.#; Zhang, Q.#; Li, Z.; Tiwari, S. K.; Qin, Y.; Yau, E.; Sanchez, A.; Singh, G.; Chang, K.; Kaul, M.; Karris, M. A. Y.; Rana, T. M.*.；The Long Noncoding RNA HEAL Regulates HIV-1 Replication through Epigenetic Regulation of the HIV-1 Promoter；mBio; 2019; 10(5). pii: e02016-19.
2016年
1、Zhang, Q.#; Huang, C.; Yang, Q.; Gao, L.; Liu, H. C.; Tang, J.; Feng, W. H.*; MicroRNA-30c modulates type I IFN responses to facilitate porcine reproductive and respiratory syndrome virus infection by targeting JAK1. The Journal of Immunology；2016; 196(5), 2272-2282.