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Metabolomic approaches to dissect dysregulated metabolism in the progression of pre-diabetes to T2DM Mol. Omics (IF 2.9) Pub Date : 2024-04-30 Wenrui Ji, Xiaomin Xie, Guirong Bai, Yanting He, Ling Li, Li Zhang, Dan Qiang
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A blood-based multi-omic landscape for the molecular characterization of kidney stone disease Mol. Omics (IF 2.9) Pub Date : 2024-04-16 Weibing Pan‡, Tianwei Yun, Xin Ouyang, Zhijun Ruan, Tuanjie Zhang, Yuhao An, Rui Wang, Peng Zhu
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PerSEveML: a web-based tool to identify persistent biomarker structure for rare events using an integrative machine learning approach Mol. Omics (IF 2.9) Pub Date : 2024-04-16 Sreejata Dutta, Dinesh Pal Mudaranthakam, Yanming Li, Mihaela E. Sardiu
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Intact cell lipidomics using the Bruker MBT lipid Xtract assay allows the rapid detection of glycosyl-inositol-phospho-ceramides from Aspergillus fumigatus Mol. Omics (IF 2.9) Pub Date : 2024-03-28 Aishani Chakraborty, Leila Alsharqi, Markus Kostrzewa, Darius Armstrong-James, Gerald Larrouy-Maumus
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Implementation of multiomic mass spectrometry approaches for the evaluation of human health following environmental exposure Mol. Omics (IF 2.9) Pub Date : 2024-03-26 Christina R. Ferreira, Paulo Clairmont F. de Lima Gomes, Kiley Marie Robison‡, Bruce R. Cooper‡, Jonathan H. Shannahan
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Genome-scale metabolic models in translational medicine: the current status and potential of machine learning in improving the effectiveness of the models Mol. Omics (IF 2.9) Pub Date : 2024-02-20 Beste Turanli, Gizem Gulfidan, Ozge Onluturk Aydogan, Ceyda Kula, Gurudeeban Selvaraj, Kazim Yalcin Arga
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Pancreatic cancer environment: from patient-derived models to single-cell omics Mol. Omics (IF 2.9) Pub Date : 2024-02-14 Ao Gu, Jiatong Li, Shimei Qiu, Shenglin Hao, Zhu-Ying Yue, Shuyang Zhai, Meng-Yao Li, Yingbin Liu
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Prediction of quality markers in Maren Runchang pill for constipation using machine learning and network pharmacology Mol. Omics (IF 2.9) Pub Date : 2024-01-30 Yunxiao Liu, Lanping Guo, Qi Li, Wencui Yang, Hongjing Dong
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Metabolomics approach to understand molecular mechanisms involved in fungal pathogen–citrus pathosystems Mol. Omics (IF 2.9) Pub Date : 2024-01-26 Evandro Silva, Rodolfo Dantas, Júlio César Barbosa, Roberto G. S. Berlinck, Taicia Fill
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Open-tubular trap columns: towards simple and robust liquid chromatography separations for single-cell proteomics Mol. Omics (IF 2.9) Pub Date : 2024-01-26 Kei G. I. Webber, Siqi Huang, Thy Truong, Jacob L. Heninger, Michal Gregus, Alexander R. Ivanov, Ryan T. Kelly
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Chemical diversity of Brittonodoxa subpinnata, a Brazilian native species of moss Mol. Omics (IF 2.9) Pub Date : 2024-01-23 Wilton Ricardo Sala-Carvalho, Denilson Fernandes Peralta, Cláudia Maria Furlan
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Proteome- and metabolome-level changes during early stages of clubroot infection in Brassica napus canola Mol. Omics (IF 2.9) Pub Date : 2024-01-23 Dinesh Adhikary, Devang Mehta, Anna Kisiala, Urmila Basu, R. Glen Uhrig, RJ Neil Emery, Habibur Rahman, Nat N. V. Kav
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A metabolomic snapshot through NMR revealed differences in phase transition during the induction of reproduction in Ulva ohnoi (Chlorophyta) Mol. Omics (IF 2.9) Pub Date : 2024-01-19 Payal A. Bodar, Rajendra Singh Thakur, Jasmine V. Rajai, Satej Bhushan, Vaibhav A. Mantri
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piRNAs in the human retina and retinal pigment epithelium reveal a potential role in intracellular trafficking and oxidative stress Mol. Omics (IF 2.9) Pub Date : 2024-01-15 Muthuramalingam Karpagavalli, Suganya Sivagurunathan, T. Sayamsmruti Panda, Nagesh Srikakulam, Reety Arora, Lamiya Dohadwala, Basant K. Tiwary, Sudha Rani Sadras, Jayamuruga Pandian Arunachalam, Gopal Pandi, Subbulakshmi Chidambaram
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Biomarkers of heart failure: advances in omics studies Mol. Omics (IF 2.9) Pub Date : 2023-12-23 Kuo Chi, Jing Liu, Xinghua Li, He Wang, Yanliang Li, Qingnan Liu, Yabin Zhou, Yuan Ge
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Development and application of mass spectrometric molecular networking for analyzing the ingredients of areca nut Mol. Omics (IF 2.9) Pub Date : 2023-12-21 Jialiang Zhao, Jiachen Shi, Xiaoying Chen, Yuanluo Lei, Tian Tian, Shuang Zhu, Chin-Ping Tan, Yuanfa Liu, Yong-Jiang Xu
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The RNA cargo of Myxococcus outer membrane vesicles Mol. Omics (IF 2.9) Pub Date : 2023-11-28 Martin T. Swain, Emily J. Radford, Allison S. Akanyeti, James H. Hallwood, David E. Whitworth
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Complementarity of two proteomic data analysis tools in the identification of drug-metabolising enzymes and transporters in human liver Mol. Omics (IF 2.9) Pub Date : 2023-11-13 Areti-Maria Vasilogianni, Sarah Alrubia, Eman El-Khateeb, Zubida M. Al-Majdoub, Narciso Couto, Brahim Achour, Amin Rostami-Hodjegan, Jill Barber
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Systematic characterization of m6A proteomics across 12 cancer types: a multi-omics integration study Mol. Omics (IF 2.9) Pub Date : 2023-11-09 Hongru Li, Yunke Jiang, Jiajin Chen, Zaiming Li, Ruyang Zhang, Yongyue Wei, Yang Zhao, Sipeng Shen, Feng Chen
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Untargeted metabolomics analysis reveals spatial metabolic heterogeneity in different intestinal segments of type 1 diabetic mice Mol. Omics (IF 2.9) Pub Date : 2023-11-07 Kaiyan Gong, Junli Chen, Xiaoli Yin, Mengjun Wu, Hong Zheng, Lingling Jiang
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Long-term physical inactivity induces significant changes in biochemical pathways related to metabolism of proteins and glycerophospholipids in mice Mol. Omics (IF 2.9) Pub Date : 2023-10-16 Bijayashree Sahu, Sunil Pani, Gourabamani Swalsingh, Unmod Senapati, Punyadhara Pani, Benudhara Pati, Subhasmita Rout, Rimjhim Trivedi, Ritu Raj, Suchanda Dey, Amar Jeet, Dinesh Kumar, Naresh C. Bal
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Correction: Generation of β-like cell subtypes from differentiated human induced pluripotent stem cells in 3D spheroids Mol. Omics (IF 2.9) Pub Date : 2023-10-06 Lisa Morisseau, Fumiya Tokito, Stéphane Poulain, Valérie Plaisance, Valérie Pawlowski, Soo Hyeon Kim, Cécile Legallais, Rachid Jellali, Yasuyuki Sakai, Amar Abderrahmani, Eric Leclerc
Correction for ‘Generation of β-like cell subtypes from differentiated human induced pluripotent stem cells in 3D spheroids’ by Lisa Morisseau et al., Mol. Omics, 2023, https://doi.org/10.1039/d3mo00050h.
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Cronobacter sakazakii infection implicates multifaceted neuro-immune regulatory pathways of Caenorhabditis elegans Mol. Omics (IF 2.9) Pub Date : 2023-09-28 Lappasi Mohanram VenkataKrishna, Boopathi Balasubramaniam, T. J. Sushmitha, V. Ravichandiran, Krishnaswamy Balamurugan
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Generation of β-like cell subtypes from differentiated human induced pluripotent stem cells in 3D spheroids Mol. Omics (IF 2.9) Pub Date : 2023-09-12 Lisa Morisseau, Fumiya Tokito, Stéphane Poulain, Valerie Plaisance, Valerie Pawlowski, Soo Hyeon Kim, Cécile Legallais, Rachid Jellali, Yasuyuki Sakai, Amar Abderrahmani, Eric Leclerc
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Cancer evaluation in dogs using cerumen as a source for volatile biomarker prospection Mol. Omics (IF 2.9) Pub Date : 2023-09-08 João Marcos G. Barbosa, Engy Shokry, Lurian Caetano David, Naiara Z. Pereira, Adriana R. da Silva, Vilma F. de Oliveira, Maria Clorinda S. Fioravanti, Paulo H. Jorge da Cunha, Anselmo E. de Oliveira, Nelson Roberto Antoniosi Filho
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Advancing science through data sharing: a new data policy for Molecular Omics Mol. Omics (IF 2.9) Pub Date : 2023-08-31
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Characterization of methionine dependence in melanoma cells Mol. Omics (IF 2.9) Pub Date : 2023-08-31 Sarita Garg, Lauren C. Morehead, Jordan T. Bird, Stefan Graw, Allen Gies, Aaron J. Storey, Alan J. Tackett, Rick D. Edmondson, Samuel G. Mackintosh, Stephanie D. Byrum, Isabelle R. Miousse
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Unraveling the role of intra-cellular metabolites in the lactic acid production by novel Bacillus amyloliquefaciens using sugarcane molasses as a substratum Mol. Omics (IF 2.9) Pub Date : 2023-08-31 Balasubramanian Vignesh Kumar, Balakrishnan Muthumari, Murugan Kavitha, John Kennedy John Praveen Kumar, Muthuramalingam Jothi Basu
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Single cell proteomics analysis of drug response shows its potential as a drug discovery platform Mol. Omics (IF 2.9) Pub Date : 2023-08-16 Juerg Straubhaar, Alexandria D’Souza, Zachary Niziolek, Bogdan Budnik
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Integrated proteomic and metabolomic analysis of plasma reveals regulatory pathways and key elements in thyroid cancer Mol. Omics (IF 2.9) Pub Date : 2023-08-16 Zijian Sun, Dongdong Feng, Liehao Jiang, Jingkui Tian, Jiafeng Wang, Wei Zhu
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Association of lipid metabolism-related metabolites with overweight/obesity based on the FTO rs1421085 Mol. Omics (IF 2.9) Pub Date : 2023-08-04 Sabiha Farooq, Sobia Rana, Amna Jabbar Siddiqui, Ayesha Iqbal, Adil Anwar Bhatti, Syed Ghulam Musharraf
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Metabolomic analysis reveals stress tolerance mechanisms in common bean (Phaseolus vulgaris L.) related to treatment with a biostimulant obtained from Corynebacterium glutamicum Mol. Omics (IF 2.9) Pub Date : 2023-07-28 Stephanie Nemesio da Silva, Luis Fernando de Oliveira, Rodrigo Alberto Repke, Alana Kelyene Pereira, Luidy Darlan Barbosa, Rafael Leiria Nunes, Alessandra Sussulini, Fabio Pinheiro, Taicia Pacheco Fill
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Functional response of microbial communities in lab-controlled oil-contaminated marine sediment Mol. Omics (IF 2.9) Pub Date : 2023-07-18 Regis Antonioli, Joice de Faria Poloni, Manuel A. Riveros Escalona, Márcio Dorn
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Untargeted metabolomics and phenotype data indicate the therapeutic and prophylactic potential of Lysimachia candida Lindl. towards high-fat high-fructose-induced metabolic syndrome in rats Mol. Omics (IF 2.9) Pub Date : 2023-07-21 Md Jahangir Alam, Parul Kamboj, Soumalya Sarkar, Sonu Kumar Gupta, Siva Swapna Kasarla, Sneh Bajpai, Deepika Kumari, Neema Bisht, Sagar Ramrao Barge, Bhaswati Kashyap, Barsha Deka, Simanta Bharadwaj, Seydur Rahman, Partha Pratim Dutta, Jagat C. Borah, Narayan Chandra Talukdar, Yashwant Kumar, Sanjay K Banerjee
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Anti-inflammatory effects of myristic acid mediated by the NF-κB pathway in lipopolysaccharide-induced BV-2 microglial cells Mol. Omics (IF 2.9) Pub Date : 2023-07-19 Qiong Huang, Chunyan Chen, Zhongxiao Zhang, Qun Xue
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ITIH5, as a predictor of prognosis and immunotherapy response for P53-like bladder cancer, is related to cell proliferation and invasion Mol. Omics (IF 2.9) Pub Date : 2023-07-11 Kun Peng, Degang Ding, Ning Wang, Tao Du, Lingdian Wang, Xiaoyu Duan
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A Q-marker screening strategy based on ADME studies and systems biology for Chinese herbal medicine, taking Qianghuo Shengshi decoction in treating rheumatoid arthritis as an example Mol. Omics (IF 2.9) Pub Date : 2023-07-11 Jiao Wang, Cimin Tao, Guangzheng Xu, Jiawei Ling, Jie Tong, Bey Hing Goh, Yipeng Xu, Linghui Qian, Yong Chen, Xuesong Liu, Yongjiang Wu, Tengfei Xu
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Integrated multi-omics analyses of microbial communities: a review of the current state and future directions Mol. Omics (IF 2.9) Pub Date : 2023-07-03 Muzaffer Arıkan, Thilo Muth
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TALKIEN: crossTALK IntEraction Network. A web-based tool for deciphering molecular communication through ligand–receptor interactions Mol. Omics (IF 2.9) Pub Date : 2023-07-05 Ferran Moratalla-Navarro, Víctor Moreno, Rebeca Sanz-Pamplona
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TarpiD, a database of putative and validated targets of piRNAs Mol. Omics (IF 2.9) Pub Date : 2023-06-27 Pooja Gupta, Gourab Das, Trisha Chattopadhyay, Zhumur Ghosh, Bibekanand Mallick
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Proteomic analysis reveals mechanisms underlying increased efficacy of bleomycin by photochemical internalization in bladder cancer cells Mol. Omics (IF 2.9) Pub Date : 2023-06-22 Odrun A. Gederaas, Animesh Sharma, Saide Mbarak, Bjørnar Sporsheim, Anders Høgset, Vanya Bogoeva, Geir Slupphaug, Lars Hagen
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Protein network analysis links the NSL complex to Parkinson’s disease via mitochondrial and nuclear biology Mol. Omics (IF 2.9) Pub Date : 2023-06-14 Katie Kelly, Patrick A. Lewis, Helene Plun-Favreau, Claudia Manzoni
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Biochemical and metabolic signatures are fundamental to drought adaptation in PGPR Enterobacter bugandensis WRS7 Mol. Omics (IF 2.9) Pub Date : 2023-05-29 Saumya Arora, Piyoosh K Babele, Prabhat Nath Jha
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Correction: Analysis of N-glycosylation protein of Kashin–Beck disease chondrocytes derived from induced pluripotent stem cells based on label-free strategies with LC-MS/MS Mol. Omics (IF 2.9) Pub Date : 2023-05-24 Sen Wang, Peilin Meng, Linlin Yuan, Xiong Guo
Correction for ‘Analysis of N-glycosylation protein of Kashin–Beck disease chondrocytes derived from induced pluripotent stem cells based on label-free strategies with LC-MS/MS’ by Sen Wang et al., Mol. Omics, 2023, https://doi.org/10.1039/d3mo00018d.
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Integrated network pharmacology and fecal metabolomic analysis of the combinational mechanisms of Shexiang Baoxin Pill against atherosclerosis Mol. Omics (IF 2.9) Pub Date : 2023-05-24 Zhicong Wang, Qianqian Wan, Bin Xie, Zifan Zhu, Xike Xu, Peng Fu, Runhui Liu
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Butyrate promotes C2C12 myoblast proliferation by activating ERK/MAPK pathway Mol. Omics (IF 2.9) Pub Date : 2023-05-19 Li Guan, Ziyi Cao, Ziyue Pan, Chao Zhao, Mengjuan Xue, Fan Yang, Jie Chen
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Network modeling suggests HIV infection phenocopies PI3K-AKT pathway mutations to enhance HPV-associated cervical cancer Mol. Omics (IF 2.9) Pub Date : 2023-05-19 Charles Ochieng’ Olwal, Jacqueline M Fabius, Lorena Zuliani-Alvarez, Manon Eckhardt, George Boateng Kyei, Peter Kojo Quashie, Nevan J Krogan, Mehdi Bouhaddou, Yaw Bediako
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Integrative analysis of cancer dependency data and comprehensive phosphoproteomics data revealed the EPHA2-PARD3 axis as a cancer vulnerability in KRAS-mutant colorectal cancer Mol. Omics (IF 2.9) Pub Date : 2023-05-17 Daigo Gunji, Ryohei Narumi, Satoshi Muraoka, Junko Isoyama, Narumi Ikemoto, Mimiko Ishida, Takeshi Tomonaga, Yoshiharu Sakai, Kazutaka Obama, Jun Adachi
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PARP-1 inhibitor alleviates liver lipid accumulation of atherosclerosis via modulating bile acid metabolism and gut microbes Mol. Omics (IF 2.9) Pub Date : 2023-05-10 Yingkun Sheng, Guibing Meng, Zhirong Zhou, Ruijiao Du, Yuefei Wang, Miaomiao Jiang
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Development and application of a data processing method for food metabolomics analysis Mol. Omics (IF 2.9) Pub Date : 2023-05-04 Yuanluo Lei, Xiaoying Chen, Jiachen Shi, Yuanfa Liu, Yong-Jiang Xu
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Distinct global metabolomic profiles of the model organism Caenorhabditis elegans during interactions with Staphylococcus aureus and Salmonella enterica Serovar Typhi Mol. Omics (IF 2.9) Pub Date : 2023-04-27 Balasubramanian Chellammal Muthubharathi, Velayutham Ravichandiran, Krishnaswamy Balamurugan
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Analysis of N-glycosylation protein of Kashin–Beck disease chondrocytes derived from induced pluripotent stem cells based on label-free strategies with LC-MS/MS Mol. Omics (IF 2.9) Pub Date : 2023-04-26 Sen Wang, Peilin Meng, Linlin Yuan, Xiong Guo
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Geographical origin traceability of rice using a FTIR-based metabolomics approach Mol. Omics (IF 2.9) Pub Date : 2023-04-20 Weifeng Xue, Qi Wang, Xuemei Li, Mei Wang, Zhenlin Dong, Haitao Bian, Fang Li
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Identification of potential biomarkers for diagnosis of syphilis from the cerebrospinal fluid based on untargeted metabolomic analysis Mol. Omics (IF 2.9) Pub Date : 2023-04-19 Liguo Liu, Dongmei Xu, Fengxin Chen, Shengnan Cai, Jin Wei, Jiaheng Deng, Jianhua Zheng, Qi Jin, Wenhui Lun
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Correction: Metabolomics study reveals the alteration of fatty acid oxidation in the hearts of diabetic mice by empagliflozin Mol. Omics (IF 2.9) Pub Date : 2023-04-18 Yingwei Zhang, Zeyu Zhang, Chundi Li, Donge Tang, Yong Dai
Correction for ‘Metabolomics study reveals the alteration of fatty acid oxidation in the hearts of diabetic mice by empagliflozin’ by Yingwei Zhang et al., Mol. Omics, 2022, 18, 643–651, https://doi.org/10.1039/D2MO00036A.
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What transcriptomics and proteomics can tell us about a high borate perturbed boron tolerant Bacilli strain Mol. Omics (IF 2.9) Pub Date : 2023-04-04 Subhajit Sen, Sriradha Ganguli, Ranadhir Chakraborty
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The complete change in bile acids and steroids in systematic metabolomics applied to the intrahepatic cholestasis of pregnancy Mol. Omics (IF 2.9) Pub Date : 2023-03-31 Hualin Xu, Yupin Xu, Guoqiang Zhao, Xukun Fu, Jian Zhao, Huaqian Wang, Yuliang Cai, Hongmei Lin
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Meta-analyses of host metagenomes from colorectal cancer patients reveal strong relationship between colorectal cancer-associated species Mol. Omics (IF 2.9) Pub Date : 2023-03-28 Manuel Adrian Riveros Escalona, Joice de Faria Poloni, Mathias J. Krause, Márcio Dorn
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Plasma metabolomic signatures from patients following high-dose total body irradiation Mol. Omics (IF 2.9) Pub Date : 2023-03-28 Xiedong Hong, Lang Tian, Qiong Wu, Liming Gu, Wenli Wang, Hanxu Wu, Mingxiao Zhao, Xiaojin Wu, Chang Wang