Trends in Microbiology
Volume 28, Issue 3, March 2020, Pages 191-201
Journal home page for Trends in Microbiology

Review
Catching HPV in the Homologous Recombination Cookie Jar

https://doi.org/10.1016/j.tim.2019.10.008Get rights and content

Highlights

  • HPV exploits the homologous recombination pathway to promote faithful replication of their genome.

  • Failure to address HPV E7 induced replication stress makes homologous recombination proteins available for HPV replication, but jeopardizes host genome integrity.

  • Despite notably mechanistic differences, homologous recombination attenuation is shared among HPV genera.

  • Manipulation of homologous recombination by HPV oncogenes is apparent in tumors associated with the virus.

  • Increased homologous recombination gene expression and attenuation of the pathway offer opportunities for biomarker development and improved therapeutic approaches, respectively.

To replicate, the human papillomaviruses (HPVs) that cause anogenital and oropharyngeal malignancies must simultaneously activate DNA repair pathways and avoid the cell cycle arrest that normally accompanies DNA repair. For years it seemed that HPV oncogenes activated the homologous recombination pathway to facilitate the HPV lifecycle. However, recent developments show that, although homologous recombination gene expression and markers of pathway activation are increased, homologous recombination itself is attenuated. This review provides an overview of the diverse ways that HPV oncogenes manipulate homologous recombination and ideas on how the resulting dysregulation and inhibition offer opportunities for improved therapies and biomarkers.

Section snippets

Understanding Human Papillomaviruses and Host DNA Machinery to Combat Disease

According to the World Health Organization, human papillomavirus (HPV) infections cause cancers that kill someone about every 90 s. HPV transforms tissues throughout the anogenital tract and oral cavity [1]. There are several formulations of prophylactic vaccines against these infections, each with an admirable safety profile, that provide immunity against the deadliest HPV infections [2]. In the developed world, their primary limitation is under-utilization resulting from vaccine hesitancy and

HPV’s Reliance on Host Homologous Recombination Proteins

HPV replication is not uniformly dependent on homologous recombination proteins. The HPV life cycle has two distinct phases (Figure 2A). The first begins with the virus infecting epithelial cells, gaining access to basal keratinocytes through microabrasions. When these cells divide laterally, the viral genome replicates along with the cell, keeping a steady number of genomes. This is the virus’s maintenance phase [17]. Homologous recombination proteins are not necessary for maintenance. As

Taking Full Advantage of Host Homologous Recombination Factors

Because HPV is so dependent on the pathway, the virus has an array of tools for increasing its access to homologous recombination machinery. By binding and destabilizing the retinoblastoma protein (RB), HPV E7 increases homologous recombination protein abundance [29]. This is accomplished in part by raising RAD51 and BRCA1 stability. HPV E6 can cooperate with HPV E7 to further induce homologous recombination gene expression, increase the amount of RAD51, RPA70, BRCA1 and BRCA2 in cells [30].

Stressing the Cell to Gain Access

HPV amplification requires replication of typically quiescent cells. To satisfy this need, HPV E7 degrades Rb and RB-family proteins leading to increased E2F transcription and effectively preventing G1/S checkpoints [39]. By removing this constraint on cell proliferation, HPV E7 allows dysregulated growth that depletes nucleoside pools causing replication stress [40]. In response, the host cell undergoes multiple efforts to mitigate the replication stress. It becomes addicted to two

Hurting without Killing: HPV’s Repurposing of Homologous Recombination Factors Has Severe Consequences for Host Cells

Of course, HPV is not the only entity with an interest in how the cell responds to DSBs. Protecting genome fidelity is essential to the host cell’s survival. HPV infections further complicate the host’s mandate to protect its own DNA. The replication stress caused by the virus represents a notable challenge to cellular genome integrity [50]. As discussed in a preceding section, these responses are evidently unable to keep up as HPV oncogenes cause DSBs consistent with a failed or overwhelmed

Targeting HPV Oncogene Biology for Direct Translational Implications

HPV-associated tumors are addicted to HPV oncogene expression. Even though HeLa cells have been grown in laboratories around the world for decades, they remain sensitive to reduction of HPV E6 or E7 [57]. This is notable given that HPV oncogenes promote acquisition of the additional mutations required for transformation. If cells with a notably impaired DDR do not acquire the necessary mutations to become independent of HPV oncogene expression after nearly 70 years in culture, it is unlikely

Cutaneous HPV Infections Repress Homologous Recombination

Although we have focused exclusively on high-risk members of the α-Papillomavirus genus to this point, other human papillomaviruses have clinically relevant interactions with the homologous recombination pathway. Members of the β-Papillomavirus genus (β-HPVs) have a tropism for cutaneous rather than anogenital and oropharyngeal keratinocytes. β-HPVs augment nonmelanoma skin cancer development, especially in people with immunosuppression [70]. The World Health Organization and the International

Concluding Remarks

Nearly all of the death and disease caused by HPV infections can be avoided through vaccinations. Unfortunately, the antivaccine movement is a persistent scourge. In the developing world, fiscal and logistic restrictions represent additional barriers. Together, this has undermined the full benefits of HPV vaccination in most countries other than Australia [81]. For unvaccinated individuals, and people who are already infected with HPV, alternative therapies and improved biomarkers are still

Acknowledgments

I would like to thank Kansas State University’s Johnson Cancer Research Center, and particularly the Les Clow family, for their support. Further, Dr Koenrad VanDoerslaer was instrumental in creating the stylized image of the HPV genome. Thanks Vanni.

Glossary

ATM
an apical DNA repair kinase that typically responds to double-strand DNA breaks. It is activated during amplification and is necessary for the HPV lifecycle.
ATR
major DNA repair kinase. ATR most often responds to replication stress. HPV must activate ATR during amplification.
BRCA1/2
these two repair proteins are critical for homologous recombination and DNA crosslink repair. Both are induced by HPV oncogene expression, and BRCA1 is necessary for viral replication.
DDR
DNA damage repair;

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