Skip to main content
Log in

Two Related Thienoquinolizidines and Their Crystal, Molecular Structure and Electronic Properties

  • Original Paper
  • Published:
Journal of Chemical Crystallography Aims and scope Submit manuscript

Abstract

Two crystals of quinolizidine compounds; systematic name: (rac)-(7,8,9,9a)-tetrahydro-4H-thieno[2,3-b]quinolizine-6,10-dione, (I), and (rac)-(9a,10)-10-hydroxy-8,9,9a,10-tetrahydro-4H-thieno[2,3-b]quinolizin-6(7H)-one, (II), have been compared and characterized by single-crystal X-ray diffraction and electronic analysis. N-heterocyclic rings in both structures are not planar and adopt a half-chair conformation. The molecules of (I) are linked via weak C–H···O hydrogen bonds into chains along c axis. While the crystal stacks in compound (II) are formed by strong O–H···O hydrogen bonds the molecules link into infinite zig-zag chains along the b axis. In both crystal structures, ππ stacking and C–H···π interactions are also observed. Calculation of the net atomic charges shows that O atoms in both compounds carry a relatively large negative charges, in comparison with the corresponding H atoms. Crystal, molecular and electronic structures of these compounds, which are influenced by hydrogen-bonded assemblies in the molecular crystals, are discussed in detail.

Graphical Abstract

Crystal, molecular and electronic structures of two related tricyclic compounds containing thienoquinolizidine ring skeleton, both structures have similar quinolizine ring moieties assuming conformations resembling half-chair.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Scheme 1
Scheme 2
Scheme 3
Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8
Fig. 9
Fig. 10

Similar content being viewed by others

References

  1. Kubo H, Kobayashi J, Higashiyama K, Kamel J, Fujii Y, Ohmiya S (2000) Biol Pharm Bull 23:1114–1117

    Article  CAS  PubMed  Google Scholar 

  2. Guarna A, Occhiato EG, Machetti F, Trabocchi A, Scarpi D, Danza G, Mancina R, Comerci A, Serio M (2001) Bioorg Med Chem 9:1385–1393

    Article  CAS  PubMed  Google Scholar 

  3. Harris GS, Kozarich JW (1997) Curr Opin Chem Biol 1:254–259

    Article  CAS  PubMed  Google Scholar 

  4. Ramazani A, Sheikhi M, Ahankar H et al (2017) J Chem Crystallogr 47:198. https://doi.org/10.1007/s10870-017-0697-8

    Article  CAS  Google Scholar 

  5. Cebollada A, Vellé A, Sanz Miguel PJ (2016) Acta Cryst C72:456–459

    Google Scholar 

  6. DeStefano MR, Geiger DK (2016) Acta Cryst C72:491–497

    Google Scholar 

  7. Pingali S, Donahue JP, Payton-Stewart F (2015) Acta Cryst C71:262–265

    Google Scholar 

  8. Wang YY, Feng YN, Wang YH et al (2017) J Chem Crystallogr 47:157. https://doi.org/10.1007/s10870-017-0692-0

    Article  CAS  Google Scholar 

  9. Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone, V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino, J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Vreven T, Montgomery Jr. JA, Peralta JE, Ogliaro F, Bearpark M, Heyd JJ, Brothers E, Kudin KN, Staroverov VN, Keith T, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam JM, Klene, M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth, GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas O, Foresman JB, Ortiz JV, Cioslowski J, Fox DJ (2013) GAUSSIAN09 Gaussian Inc. Wallingford, CT, USA

  10. Šafář P, Marchalín Š, Prónayová N, Vrábel V, Lawson AM, Othman M, Daïch A (2016) Tetrahedron 72:3221–3231

    Article  CAS  Google Scholar 

  11. Sheldrick GM (2015) Acta Cryst C71:3–8

    Google Scholar 

  12. Burla MC, Caliandro R, Carrozzini B, Cascarano GL, Cuocci C, Giacovazzo C, Mallamo M, Mazzon A, Polidori G (2015) Crystal structure determination and refinement via SIR2014. J Appl Cryst 48:306–309

    Article  CAS  Google Scholar 

  13. Brandenburg K (1999) Diamond Version 2.1c. Crystal Impact GbR, Bonn

    Google Scholar 

  14. Farugia LJ (1997) J Appl Crystallogr 30:565

    Article  Google Scholar 

  15. Macrae CF, Edgington PR, McCabe P, Pidcock E, Shields GP, Taylor R, Towler M, van de Streek J (2006) J Appl Cryst 39:453–457

    Article  CAS  Google Scholar 

  16. Hypercube, Inc. (2007) Hyperchem 7.0 Gainesville, FL, 32601, USA

  17. Dolomanov OV, Bourhis LJ, Gildea RJ, Howard JAK, Puschmann H (2009) OLEX2: a complete structure solution, refinement and analysis program. J Appl Cryst 42:339–341

    Article  CAS  Google Scholar 

  18. Spek AL (2009) Acta Cryst D65:148–155

    Google Scholar 

  19. Hübschle C, Sheldrick GM, Dittrich B (2011) J Appl Cryst 44:1281–1284

    Article  CAS  Google Scholar 

  20. Cremer D, Pople JA (1975) General definition of ring puckering coordinates. J Am Chem Soc 97(6):1354–1358

    Article  CAS  Google Scholar 

  21. Bernstein J, Davis RE, Shimoni L, Chang NL (1995) Angew Chem Int Ed Engl 34:1555–1573

    Article  CAS  Google Scholar 

  22. Peňa-Solórzano D, König B, Sierra CA, Puentes CO (2017) Acta Cryst E73:804–808

    Google Scholar 

  23. Singh UP, Tomar K, Kashyap S, Verma P (2017) J Chem Crystallogr 47:69

    Article  CAS  Google Scholar 

  24. Clark RC, Reid JS (1995) The analytical calculation of absorption in multifaceted crystals. Acta Cryst A51:887–897

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This work was supported by the Slovak Research and Development Agency under the contract no. APVV-17-0513 and by the Scientific Grant Agency of the Slovak Republic VEGA (Project No. 1/0262/19). This contribution is also the result of the project: Research Center for Industrial Synthesis of Drugs, ITMS 26240220061, supported by the Research & Development Operational Program funded by the ERDF. We are grateful to the HPC centre at the Slovak University of Technology in Bratislava, which is a part of the Slovak Infrastructure of High Performance Computing (SIVVP project, ITMS code 26230120002, funded by the European region development funds, ERDF), for the computational time and the resources.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Július Sivý.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Sivý, J., Marchalín, Š. & Šafář, P. Two Related Thienoquinolizidines and Their Crystal, Molecular Structure and Electronic Properties. J Chem Crystallogr 49, 174–180 (2019). https://doi.org/10.1007/s10870-019-00783-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10870-019-00783-8

Keywords

Navigation