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One stop shop III: taxonomic update with molecular phylogeny for important phytopathogenic genera: 51–75 (2019)

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Abstract

This is a continuation of a series focused on providing a stable platform for the taxonomy of phytopathogenic fungi and organisms. This paper focuses on 25 phytopathogenic genera: Alternaria, Capnodium, Chaetothyrina, Cytospora, Cyphellophora, Cyttaria, Dactylonectria, Diplodia, Dothiorella, Entoleuca, Eutiarosporella, Fusarium, Ilyonectria, Lasiodiplodia, Macrophomina, Medeolaria, Neonectria, Neopestalotiopsis, Pestalotiopsis, Plasmopara, Pseudopestalotiopsis, Rosellinia, Sphaeropsis, Stagonosporopsis and Verticillium. Each genus is provided with a taxonomic background, distribution, hosts, disease symptoms, and updated backbone trees. A new database (Onestopshopfungi) is established to enhance the current understanding of plant pathogenic genera among plant pathologists.

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References

  • Adams GC, Wingfield MJ, Common R, Roux J (2005) Phylogenetic relationships and morphology of Cytospora species and related teleomorphs (Ascomycota, Diaporthales, Valsaceae) from Eucalyptus. Stud Mycol 52:1–144

    Google Scholar 

  • Adams GC, Roux J, Wingfield MJ (2006) Cytospora species (Ascomycota, Diaporthales, Valsaceae): introduced and native pathogens of trees in South Africa. Australas Plant Pathol 35:521–548

    Article  Google Scholar 

  • Agrios GN (2005) Introduction to plant pathology. Elsevier Academic Press, Amsterdam

    Google Scholar 

  • Ahmed Y, Cirvilleri G, D’Onghia AM, Yaseen T (2014) First report of Verticillium wilt of Mango (Mangifera indica) caused by Verticillium dahliae in Italy. Plant Dis 98:1156–1157

    Article  CAS  PubMed  Google Scholar 

  • Aiello D, Guarnaccia V, Vitale A, Cirvilleri G, Granata G, Epifani F, Perrone G, Polizzi G, Groenewald JZ, Crous PW (2014) Ilyonectria palmarum sp. nov. causing dry basal stem rot of Arecaceae. Eur J Plant Pathol 138:347–359

    Article  CAS  Google Scholar 

  • Al Ghafri AA, Maharachchikumbura SS, Hyde KD, Al-Saady NA, Al-Sadi AM (2019) A new section and a new species of Alternaria from Oman. Phytotaxa 405:279–289

    Article  Google Scholar 

  • Al-Hatmi AMS, Meletiadis J, Curfs-Breuker I, Bonifaz A, Meis JF, De Hoog GS (2019) In vitro combinations of natamycin with voriconazole, itraconazole and micafungin against clinical Fusarium strains causing keratitis. J Antimicrob Chemo 71: 953–955

    Article  Google Scholar 

  • Alves A, Correia A, Luque J, Phillips AJL (2004) Botryosphaeria corticola sp. nov. on Quercus species, with notes and description of Botryosphaeria stevensii and its anamorph, Diplodia mutila. Mycologia 96:598–613

    Article  PubMed  Google Scholar 

  • Alves A, Crous PW, Correia A, Phillips AJL (2008) Morphological and molecular data reveal cryptic speciation in Lasiodiplodia theobromae. Fungal Divers 28:1–13

    Google Scholar 

  • Alves A, Linaldeddu BT, Deidda A, Scanu B, Phillips AJL (2014) The complex of Diplodia species associated with Fraxinus and some other woody hosts in Italy and Portugal. Fungal Divers 67:143–156

    Article  Google Scholar 

  • Aoki T, O’Donnell K (1999) Morphological characterization of Gibberella coronicola sp. nov., obtained through mating experiments of Fusarium pseudograminearum. Mycoscience 40:443–453

    Article  Google Scholar 

  • Arjona-Girona I, López-Herrera CJ (2018) Study of a new biocontrol fungal agent for avocado white root rot. Biol Control 117:6–12

    Article  Google Scholar 

  • Arora NK, Kang SC, Maheshwari DK (2001) Isolation of siderophore–producing strains of Rhizobium meliloti and their biocontrol potential against Macrophomina phaseolina that causes charcoal rot of groundnut. Current Sci 81:673–677

    Google Scholar 

  • Ash G (2000) Downy mildew of grape. The Plant Health Instructor Auger J, Perez I, Fullerton RA, Esterio M (2009) First report of Verticillium wilt of gold kiwifruit, Actinidia chinensis cv. Hort 16A, caused by Verticillium albo–atrum in Chile. Plant Dis 93:553–553

    Google Scholar 

  • Aveskamp MM, de Gruyter J, Woudenberg JHC, Verkley GJM, Crous PW (2010) Highlights of the Didymellaceae: a polyphasic approach to characterize Phoma and related pleosporalean genera. Stud Mycol 65:1–60

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ayoubi N, Soleimani MJ (2016) Strawberry fruit rot caused by Neopestalotiopsis iranensis sp. nov., and N. mesopotamica. Curr Microbiol 72(3):329–336

    CAS  PubMed  Google Scholar 

  • Baeza-Montanez L, Gomez-Cabrera R, Garcia-Pedrajas MD (2010) First report of Verticillium wilt caused by Verticillium dahliae on Mango Trees (Mangifera indica) in Southern Spain. Plant Dis 94:380–381

    Article  CAS  PubMed  Google Scholar 

  • Barbara DJ, Clewes E (2003) Plant pathogenic Verticillium species: how many of them are there? Mol Plant Pathol 4:297–305

    Article  CAS  PubMed  Google Scholar 

  • Barr ME (1978) The Diaporthales in North America: with emphasis on Gnomonia and its segregates. Mycol Mem 7:1–232

    Google Scholar 

  • Barr ME (1987) New taxa and combinations in the Loculoascomycetes. Mycotaxon, USA

  • Berbegal M, Armengol J (2009) First report of Verticillium wilt of faba bean caused by Verticillium dahliae in Spain. Plant Dis 93:432–432

    Article  CAS  PubMed  Google Scholar 

  • Berkeley MJ, Desmazières JBHJ (1849) On some moulds referred by authors to Fumago and to certain allied or analogous forms. J Hortic Soc Lond 4:3–19

    Google Scholar 

  • Blomquist CL, Rooney-Latham S, Barrera N (2017) First report of Verticillium wilt caused by Verticillium dahliae on fava bean in the United States. Plant Dis 101:384–384

    Article  Google Scholar 

  • Blum A, Bressan M, Zahid A, Trinsoutrot-Gattin I, Driouich A, Laval K (2018) Verticillium wilt on fiber flax: symptoms and pathogen development in planta. Plant Dis 102:2421–2429

    Article  PubMed  Google Scholar 

  • Boerema GH (1997) Contributions towards a monograph of Phoma (Coelomycetes). V. Subdivision of the genus in sections. Mycotaxon (USA)

  • Boerema GH, de Gruyter J, Noordeloos ME, Hamers MEC (2004) Phoma identification manual. CABI Publishing, Cambridge

    Google Scholar 

  • Booth C (1959) Studies of Pyrenomycetes. IV. Nectria (part 1). Mycol Pap 73:1–115

    Google Scholar 

  • Booth C (1966) The genus Cylindrocarpon. Mycol Pap 104:1–56

    Google Scholar 

  • Booth C (1971) The genus Fusarium. Commonwealth Mycological Institute, Kew, Surrey, England

    Google Scholar 

  • Brayford D, Honda BM, Mantiri FR, Samuels GJ (2004) Neonectria and Cylindrocarpon: the Nectria mammoidea group and species lacking microconidia. Mycologia 96:572–597

    Article  PubMed  Google Scholar 

  • Bruton BD, Fish WW, Subbarao KV, Isakeit T (2007) First report of Verticillium wilt of Watermelon in the Texas high plains. Plant Dis 91(8):1053–1053

    Article  CAS  PubMed  Google Scholar 

  • Burgess TI, Barber PA, Mohali S, Pegg G, de Beer W, Wingfield MJ (2006) Three new Lasiodiplodia spp. from the tropics, recognized based on DNA sequence comparisons and morphology. Mycologia 98:423–435

    Article  CAS  PubMed  Google Scholar 

  • Cabral A, Groenewald JZ, Rego C, Oliveira H, Crous PW (2012a) Cylindrocarpon root rot: multi-gene analysis reveals novel species within the Ilyonectria radicicola species complex. Mycol Prog 11:655–688

    Article  Google Scholar 

  • Cabral A, Rego C, Crous PW, Oliveira H (2012b) Virulence and cross-infection potential of Ilyonectria spp. to grapevine. Phytopathol Mediterr 52:340–354

    Google Scholar 

  • Cabral A, Rego C, Nascimento T, Oliveira H, Groenewald JZ, Crous PW (2012c) Multi-gene analysis and morphology reveal novel Ilyonectria species associated with black foot disease of grapevines. Fungal Biol 116:62–80

    Article  CAS  PubMed  Google Scholar 

  • Callan BE (1998) Diseases of Populus in British Columbia: a diagnostic manual. Canadian Forest Service, Victoria, BC

    Google Scholar 

  • Cannon PF, Hawksworth DL, Sherwood-Pike MA (1985) The British Ascomycotina, an annotated checklist. Commonwealth Agricultural Bureaux, Slough

    Google Scholar 

  • Carisse O (2016) Development of grape downy mildew (Plasmopara viticola) under northern viticulture conditions: influence of fall disease incidence. Eur J Plant Pathol 144:773–783

    Article  Google Scholar 

  • Castlebury LA, Rossman AY, Jaklitsch WJ, Vasilyeva LN (2002) A preliminary overview of Diaporthales based on large subunit nuclear ribosomal DNA sequences. Mycologia 94:1017–1031

    Article  CAS  PubMed  Google Scholar 

  • Castlebury LA, Rossman AY, Hyten AS (2006) Phylogenetic relationships of Neonectria/Cylindrocarpon on Fagus in North America. Canad J Bot 84:1417–1433

    Article  CAS  Google Scholar 

  • Castro BL, Carreño AJ, Galeano NF, Roux J, Wingfield MJ, Gaitán ÁL (2013) Identification and genetic diversity of Rosellinia spp. associated with root rot of coffee in Colombia. Australas Plant Pathol 42:515–523

    Article  CAS  Google Scholar 

  • Chamorro M, Aguado A, De los Santos B (2016) First report of root and crown rot caused by Pestalotiopsis clavispora (Neopestalotiopsis clavispora) on strawberry in Spain. Plant Dis 100:1495

    Article  Google Scholar 

  • Chaverri P, Gazis RO, Samuels GJ (2011) Trichoderma amazonicum, a new endophytic species on Hevea brasiliensis and H. guianensis from the Amazon basin. Mycologia 103:139–151

    Article  PubMed  Google Scholar 

  • Chen Q, Jiang JR, Zhang GZ, Cai L, Crous PW (2015) Resolving the Phoma enigma. Stud Mycol 82:137–217

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chen Q, Hou LW, Duan WJ, Crous PW, Cai L (2017) Didymellaceae revisited. Stud Mycol 87:105–159

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Choi Y-J, Beakes G, Glockling S, Kruse J, Nam B, Nigrelli L, Ploch S, Shin H-D, Shivas RG, Telle S, Voglmayr H, Thines M (2015) Towards a universal barcode of oomycetes—a comparison of the cox1 and cox2 loci. Mol Ecol Res 15:1275–1288

    Article  CAS  Google Scholar 

  • Choi IY, Oh HT, Lee WH, Cho SE, Shin HD (2017) First report of white root rot caused by Rosellinia necatrix on Aronia melanocarpa in Korea. Plant Dis 101(1):253–253

    Article  Google Scholar 

  • Chomnunti P, Schoch CL, Aguirre-Hudson B, Ko-Ko TW, Hongsanan S, Jones EBG, Kodsueb R, Phookamsak R, Chukeatirote E, Bahkali AH, Hyde KD (2011) Capnodiaceae. Fungal Divers 51:103–134

    Article  PubMed  PubMed Central  Google Scholar 

  • Chomnunti P, Hongsanan S, Aguirre-Hudson B, Tian Q, Peršoh D, Dhami MK, Alias AS, Xu J, Liu X, Stadler M, Hyde KD (2014) The sooty moulds. Fungal divers 66:1–36 Clendenin L (1896) Lasiodiplodia Ellis & Everh. n. gen. Bot Gaz 21:92–93

    Google Scholar 

  • Clendenin L (1896) Lasiodiplodia E. & E., n. gen. Bot Gaz 21:92

    Article  Google Scholar 

  • Constantinescu O, Voglmayr H, Fatehi J, Thines M (2005) Plasmoverna gen. nov. and the taxonomy and nomenclature of Plasmopara (chromista, peronosporales). Taxon 54:813–821

    Article  Google Scholar 

  • Crane PE, Hopkins AJ, Dick MA, Bulman LS (2009) Behaviour of Neonectria fuckeliana causing a pine canker disease in New Zealand. Canad J Forest Res 39:2119–2128

    Article  Google Scholar 

  • Crous PW, Palm ME (1999) Reassessment of the anamorph genera Botryodiplodia, Dothiorella and Fusicoccum. Sydowia 51:167–175

    Google Scholar 

  • Crous PW, Gams W, Stalpers JA, Robert V, Stegehuis G (2004) MycoBank: an online initiative to launch mycology into the 21st century. Stud Mycol 50:19–22

    Google Scholar 

  • Crous PW, Slippers B, Wingfield MJ, Rheeder J, Marasas WF, Philips AJ, Alves A, Burgess T, Barber P, Groenewald JZ (2006) Phylogenetic lineages in the Botryosphaeriaceae. Stud Mycol 55:235–253

    Article  PubMed  PubMed Central  Google Scholar 

  • Crous PW, Schubert K, Braun U, De Hoog GS, Hocking AD, Shin HD, Groenewald JZ (2007) Opportunistic, human–pathogenic species in the Herpotrichiellaceae are phenotypically similar to saprobic or phytopathogenic species in the Venturiaceae. Stud Mycol 58:185–217

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Crous PW, Braun U, Wingfield MJ, Wood AR, Shin HD, Summerell BA, Alfenas AC, Cumagun CJR, Groenewald JZ (2009) Phylogeny and taxonomy of obscure genera of microfungi. Persoonia 22:139–161

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Crous PW, Wingfield MJ, Guarro J, Cheewangkoon R, van der Bank M, Swart WJ, Stchigel AM, Cano-Lira JF, Roux J, Madrid H, Damm U, Wood AR, Shuttleworth LA, Hodges CS, Munster M, de Jesús Yáñez-Morales M, Zúñiga-Estrada L, Cruywagen EM, de Hoog GS, Silvera C, Najafzadeh J, Davison EM, Davison PJN, Barrett MD, Barrett RL, Manamgoda DS, Minnis AM, Kleczewski NM, Flory SL, Castlebury LA, Clay K, Hyde KD, Maússe-Sitoe SND, Chen S, Lechat C, Hairaud M, Lesage-Meessen L, Pawlowska J, Wilk M, Sliwińska-Wyrzychowska A, Mętrak M, Wrzosek M, Pavlic-Zupanc D, Maleme HM, Slippers B, Mac Cormack WP, Archuby DI, Grünwald NJ, Tellería MT, Dueñas M, Martín MP, Marincowitz S, de Beer ZW, Perez CA, Gené J, Marin-Felix Y, Groenewald JZ (2013) Fungal planet description sheets: 154–213. Persoonia 31:188–296

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Crous PW, Müller M, Sánchez RM, Giordano L, Bianchinotti M, Anderson FE, Groenewald JZ (2015) Resolving Tiarosporella spp. allied to Botryosphaeriaceae and Phacidiaceae. Phytotaxa 202:73–93

    Article  Google Scholar 

  • Crous PW, Wingfield MJ, Burgess TI, Hardy GE, Crane C, Barrett S, Canolira JF, Le Roux JJ, Thangavel R, Guarro J, Stchigel AM, Martín MP, Alfredo DS, Barber PA, Barreto RW, Baseia IG, Cano-Canals J, Cheewangkoon R, Ferreira RJ, Gené J, Lechat C, Moreno G, Roets F, Shivas RG, Sousa JO, Tan YP, Wiederhold NP, Abell SE, Accioly T, Albizu JL, Alves JL, Antoniolli ZI, Aplin N, Araújo J, Arzanlou M, Bezerra JDP, Bouchara JP, Carlavilla JR, Castillo A, Castroagudín VL, Ceresini PC, Claridge GF, Coelho G, Coimbra VRM, Costa LA, da Cunha KC, da Silva SS, Daniel R, de Beer ZW, Dueñas M, Edwards J, Enwistle P, Fiuza PO, Fournier J, García D, Gibertoni TB, Giraud S, Guevara-Suarez M, Gusmão LFP, Haituk S, Heykoop M, Hirooka Y, Hofmann TA, Houbraken J, Hughes DP, Kautmanová I, Koppel O, Koukol O, Larsson E, Latha KPD, Lee DH, Lisboa DO, Lisboa WS, López-Villalba Á, Maciel JLN, Manimohan P, Manjón JL, Marincowitz S, Marney TS, Meijer M, Miller AN, Olariaga I, Paiva LM, Piepenbring M, Poveda-Molero JC, Raj KNA, Raja HA, Rougeron A, Salcedo I, Samadi R, Santos TAB, Scarlett K, Seifert KA, Shuttleworth LA, Silva GA, Silva M, Siqueira JPZ, Souza-Motta CM, Stephenson SL, Sutton DA, Tamakeaw N, Telleria MT, Valenzuela-Lopez N, Viljoen A, Visagie CM, Vizzini A, Wartchow F, Wingfield BD, Yurchenko E, Zamora JC, Groenewald JZ (2016) Fungal planet description sheets: 469–557. Persoonia 37:218–403

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Crous PW, Wingfield MJ, Burgess TI, Hardy GE, Barber PA, Alvarado P, Barnes CW, Buchanan PK, Heykoop M, Moreno G, Thangavel R, van der Spuy S, Barili A, Barrett S, Cacciola SO, Cano-Lira JF, Crane C, Decock C, Gibertoni TB, Guarro J, Guevara-Suarez M, Hubka V, Kolařík M, Lira CRS, Ordoñez ME, Padamsee M, Ryvarden L, Soares AM, Stchigel AM, Sutton DA, Vizzini A, Weir BS, Acharya K, Aloi F, Baseia IG, Blanchette RA, Bordallo JJ, Bratek Z, Butler T, Cano-Canals J, Carlavilla JR, Chander J, Cheewangkoon R, Cruz RHSF, da Silva M, Dutta AK, Ercole E, Escobio V, Esteve-Raventós F, Flores JA, Gené J, Góis JS, Haines L, Held BW, Jung MH, Hosaka K, Jung T, Jurjević Ž, Kautman V, Kautmanova I, Kiyashko AA, Kozanek M, Kubátová A, Lafourcade M, LaSpada F, Latha KPD, Madrid H, Malysheva EF, Manimohan P, Manjón JL, Martín MP, Mata M, Merényi Z, Morte A, Nagy I, Normand AC, Paloi S, Pattison N, Pawłowska J, Pereira OL, Petterson ME, Picillo B, Raj KNA, Roberts A, Rodríguez A, Rodríguez-Campo FJ, Romański M, Ruszkiewicz-Michalska M, Scanu B, Schena L, Semelbauer M, Sharma R, Shouche YS, Silva V, Staniaszek-Kik M, Stielow JB, Tapia C, Taylor PWJ, Toome-Heller M, Vabeikhokhei JMC, van Diepeningen AD, Van Hoa N, Van Tri M, Wiederhold NP, Wrzosek M, Zothanzama J, Groenewald JZ (2017) Fungal planet description sheets: 558–624. Persoonia 38:240–384

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cruywagen EM, Slippers B, Roux J, Wingfield MJ (2017) Phylogenetic species recognition and hybridisation in Lasiodiplodia: a case study on species from baobabs. Fungal Biol 121:420–436

    Article  PubMed  Google Scholar 

  • Daranagama DA, Camporesi E, Tian Q, Liu X, Chamyuang S, Stadler M, Hyde KD (2015) Anthostomella is polyphyletic comprising several genera in Xylariaceae. Fungal Divers 73:203–238

    Article  Google Scholar 

  • Daranagama DA, Hyde KD, Sir EB, Thambugala KM, Tian Q, Samarakoon MC, McKenzie EH, Jayasiri SC, Tibpromma S, Bhat JD, Liu X, Stadler M (2018) Towards a natural classification and backbone tree for Graphostromataceae, Hypoxylaceae, Lopadostomataceae and Xylariaceae. Fungal Divers 88:1–165

    Article  Google Scholar 

  • de Gruyter J, Woudenberg JHC, Aveskamp MM, Verkley GJM, Groenewald JZ, Crous PW (2013) Redisposition of Phoma-like anamorphs in Pleosporales. Stud Mycol 75:1–36

    Article  PubMed  Google Scholar 

  • de Hoog GS, Weenink XO, van den Ende AHGG (1999) Taxonomy of the Phialophora verrucosa complex with the description of two new species. Stud Mycol 43:107–122

    Google Scholar 

  • de Hoog GS, Mayser P, Haase G, Horre R, Horrevorts AM (2000) A new species, Phialophora europaea, causing superficial infections in humans. Mycoses 43:409–416

    Article  PubMed  Google Scholar 

  • de Hoog GS, Horré R (2002) Molecular taxonomy of the Alternaria and Ulocladium species from humans and their identification in the routine laboratory. Mycoses 45:259–276

    Article  PubMed  Google Scholar 

  • de Hoog GS, Vicente VA, Najafzadeh MJ, Harrak MJ, Badali H, Seyedmousavi S (2011) Waterborne Exophiala species causing disease in cold-blooded animals. Persoonia 27:46–72

    Article  PubMed  PubMed Central  Google Scholar 

  • de Vries GA (1962) Cyphellophora laciniata nov. gen., nov. sp. and Dactylium fusarioides Fragoso et Ciferri. Mycopathol Mycol Appl 16:47–54

    Article  Google Scholar 

  • de Vries GA, Elders MCC, Luykx MHF (1986) Description of Cyphellophora pluriseptata sp. nov. Anton Leeuw Int J G 52:141–143

    Article  Google Scholar 

  • Decock C, Delgado-Rodríguez G, Buchet S, Seng JM (2003) A new species and three new combinations in Cyphellophora, with a note on the taxonomic affinities of the genus, and its relation to Kumbhamaya and Pseudomicrodochium. Antonie van Leeuwenhoek 84:209–216

    Article  CAS  PubMed  Google Scholar 

  • Denman S, Crous PW, Taylor JE, Kang J-C, Pascoe I, Wingfield MJ (2000) An overview of the taxonomic history of Botryosphaeria, and a re–evaluation of its anamorphs based on morphology and ITS rDNA phylogeny. Stud Mycol 45:129–140

    Google Scholar 

  • Deshwal VK, Dubey RC, Maheshwari DK (2003) Isolation of plant growth–promoting strains of Bradyrhizobium (Arachis) sp. with biocontrol potential against Macrophomina phaseolina causing charcoal rot of peanut. Curr Sci 84:443–448

    Google Scholar 

  • Devaux AL, Sackston WE (1966) Taxonomy of Verticillium species causing wilt of horticultural crops in Quebec. Can J Bot 44:803–811

    Article  Google Scholar 

  • Diedicke H (1912) Die Abteilung Hyalodidymae der Spaerioideen. Ann Myc 10:135–152

    Google Scholar 

  • Ding G, Jiang L, Guo L, Chen X, Zhang H, Che Y (2008) Pestalazines and pestalamides, bioactive metabolites from the plant pathogenic fungus Pestalotiopsis theae. J Nat Prod 71:1861–1865

    Article  CAS  PubMed  Google Scholar 

  • Dissanayake AJ, Phillips AJL, Li XH, Hyde KD (2016) Botryosphaeriaceae: current status of genera and species. Mycosphere 7:1001–1073

    Article  Google Scholar 

  • dos Santos AF, Thomazi H, Duarte HSS, Machado EB, Silva CN, Tessmann DJ (2017) First report of root rot caused by Rosellinia bunodes on a poplar species (Populus deltoides) in Brazil. Plant Dis 101:632–632

    Article  Google Scholar 

  • Ehrenberg CG (1818) Sylvae mycologicae berolinenses. Formis Theophili Bruschcke, Berlin, Germany [In Latin]

    Google Scholar 

  • Ekanayaka AH, Ariyawansa HA, Hyde KD, Jones EBG, Daranagama DA, Phillips AJL, Hongsanan SC, Jayasiri SC, Zhao Q (2017) Discomycetes: the apothecial representatives of the phylum Ascomycota. Fungal Divers 87:237–298

    Article  Google Scholar 

  • ElAraby ME, Kurle JE, Stetina SR (2003) First report of charcoal rot (Macrophomina phaseolina) on soybean in Minnesota. Plant Dis 87:202–202

    Article  CAS  PubMed  Google Scholar 

  • Ellis MB (1971) Dematiaceous Hyphomycetes. Commonwealth Mycological Institute, Kew, Surrey, England

    Google Scholar 

  • Ellis MB (1976) More Dematiaceous Hyphomycetes. Commonwealth Mycological Institute, Kew, Surrey, England

    Google Scholar 

  • Ellis JB, Everhart BM (1984) New species of fungi from various localities. Proc Acad Nat Sci Phila 46:322–386

    Google Scholar 

  • Engelhard AW, Carter JC (1956) Isolations of Verticillium albo-atrum from woody hosts in Illinois, 1945–1955. Plant Dis Rep 40:459–462

    Google Scholar 

  • Eriksson OE (2014) Checklist of the non-lichenized ascomycetes of Sweden. Acta Universitatis Upsaliensis

  • Eriksson OE, Baral H-O, Currah RS, Hansen K, Kurtzman CP, Rambold G, Læssøe T (2001) Outline of Ascomycota. Myconet 6:1–27

    Google Scholar 

  • Espinoza JG, Briceño EX, Keith LM, Latorre BA (2008) Canker and twig dieback of blueberry caused by Pestalotiopsis spp. and a Truncatella sp. in Chile. Plant Dis 92:1407–1414

    Article  PubMed  Google Scholar 

  • European and Mediterranean Plant Protection Organization (2019) https://www.eppo.int/

  • Fan X, Liang YM, Ma R, Tian CM (2014) Morphological and phylogenetic studies of Cytospora (Valsaceae, Diaporthales) isolates from Chinese scholar tree, with description of a new species. Mycoscience 55:252–259

    Article  Google Scholar 

  • Fan X, Hyde KD, Liu M, Liang Y, Tian C (2015a) Cytospora species associated with walnut canker disease in China, with description of a new species C. gigalocus. Fungal Biol 119:310–319

    Article  PubMed  Google Scholar 

  • Fan X, Hyde KD, Yang Q, Liang Y, Ma R, Tian C (2015b) Cytospora species associated with canker disease of three anti-desertification plants in northwestern China. Phytotaxa 197:227–244

    Article  Google Scholar 

  • Farr DF, Rossman AY (2019) Fungal databases, systematic mycology and microbiology laboratory, ARS, USDA. http://nt.ars-grin.gov/fungaldatabases/

  • Faull JL, Olejnik I, Ingrouille M, Reynolds D (2002) A reassessment of the taxonomy of some tropical sooty moulds. Trop Mycol 2:33–40

    Google Scholar 

  • Feng P, Lu Q, Najafzadeh MJ, van den Ende AG, Sun J, Li R, Xi L, Vicente VA, Lai W, Lu C, de Hoog GS (2014) Cyphellophora and its relatives in Phialophora: biodiversity and possible role in human infection. Fung Diver 65:17–45

    Article  Google Scholar 

  • Filiz ÜNAL, Koca Ercan, Aşkin A, Kurbetli İ, Sarpkaya K (2018) Identification and virules of Sphaeropsis tip blight (Sphaeropsis sapinea) on Pinus spp. in Istanbul and Bursa parks. Acta Biol Turc 31:18–21

    Google Scholar 

  • Fotouhifar KB, Hedjaroude GA, Leuchtmann A (2010) ITS rDNA phylogeny of Iranian strains of Cytospora and associated teleomorphs. Mycologia 102:1369–1382

    Article  PubMed  Google Scholar 

  • Fournier J, Lechat C, Régis Courtecuisse R, Moreau P-A (2017a) The genus Rosellinia (Xylariaceae) in Guadeloupe and Martinique (French West Indies). Ascomycete.org 9:171–208.

    Google Scholar 

  • Fournier J, Lechat C, Courtecuisse R (2017b) The genus Biscogniauxia (Xylariaceae) in Guadeloupe and Martinique (French West Indies). Ascomycete.org 9:67–99

    Google Scholar 

  • Fox RTV (1998) Chrysanthemum ray blight. Mycologist 12:135–136

    Article  Google Scholar 

  • Fradin EF, Thomma BP (2006) Physiology and molecular aspects of Verticillium wilt diseases caused by V. dahliae and V. albo-atrum. Mol Plant Pathol 7:71–86

    Article  CAS  PubMed  Google Scholar 

  • Fraser L (1935) An investigation of the sooty mould of New South Wales IV the species of the Eucapnodieae. Proc Linn Soc NSW 40:159–178

    Google Scholar 

  • Fries EM (1823) Systema mycologicum, vol 2. Greifswald, Germany

    Google Scholar 

  • Fries EM (1849) Summa vegetabilium Scandinaviae, pp 1–572

  • Gadgil PD (1985) Cyttaria galls on silver beech. Forest Research Institute

  • Gams W, Holubová-Jechová V (1976) Chloridium and some other dematiaceous hyphomycetes growing on decaying wood. Stud Mycol 13:1–99

    Google Scholar 

  • Gams W, Zare R, Summerbell RC (2005) (1654) Proposal to conserve the generic name Verticillium (anamorphic Ascomycetes) with a conserved type. Taxon 54:179–179

    Article  Google Scholar 

  • Gamundi IJ (1971) Las Cyttariales sudamericanas (Fungi–Ascomycetes). Darwiniana, pp 461–510

  • Gamundí IJ, De Lederkremer RM (1989) Los hongos andino-patagónicos del género Cyttaria. Sus hidratos de carbono. Cieñe Investig 43:4–13

    Google Scholar 

  • Gao L, Sun G, Zhang R, Gleason ML (2014) Secondary spread of Zygophiala wisconsinensis on the surface of apple fruit. Eur J Plant Pathol 139:117–124

    Article  Google Scholar 

  • Gargas A, Taylor JW (1995) Phylogeny of discomycetes and early radiations of the apothecial ascomycotina inferred from SSu rDNA sequence data. Exp Mycol 19:7–15

    Article  CAS  PubMed  Google Scholar 

  • Garibaldi A, Gilardi G, Gullino ML (2007) First report of Verticillium wilt caused by Verticillium dahliae on lettuce in Italy. Plant Dis 91:770–770

    Article  CAS  PubMed  Google Scholar 

  • Gavrilov-Zimin IA (2017) A remarkable example of symbiosis between an animal and a fungus in a new species of legless mealybug (Insecta: Pseudococcidae). J Nat Hist 51:2211–2224

    Article  Google Scholar 

  • Geiser DM, del Mar Jiménez-Gasco M, Kang S, Makalowska I, Veeraraghavan N, Ward TJ, Zhang N, Kuldau GA, O’donnell K (2004) FUSARIUM-ID v. 1.0: a DNA sequence database for identifying Fusarium. Eur J Plant Pathol 110:473–479

    Article  CAS  Google Scholar 

  • Georgieva MI, Hlebarska S (2016) A review of Sphaeropsis sapinea occurrence on Pinus species in Bulgaria. J BioSci Biotechnol 5:247–250

    Google Scholar 

  • Gleason ML, Batzer JC, Sun G, Zhang R, Arias MMD, Sutton TB, Crous PW, Ivanović M, McManus PS, Cooley DR, Mayr U, Weber RWS, Yoder KS, Del Ponte EM, Biggs AR, Oertel B (2011) A new view of sooty blotch and flyspeck. Plant Dis 95:368–383

    Article  PubMed  Google Scholar 

  • Göker M, Voglmayr H, Riethmüller A, Weiß M, Oberwinkler F (2003) Taxonomic aspects of Peronosporaceae inferred from bayesian molecular phylogenetics. Can J Bot 81:672–683

    Article  Google Scholar 

  • Göker M, Voglmayr H, Riethmüller A, Oberwinkler F (2007) How do obligate parasites evolve? A multi–gene phylogenetic analysis of downy mildews. Fungal Genet Biol 44(2):105–122

    Article  PubMed  CAS  Google Scholar 

  • González P, Alaniz S, Montelongo MJ, Rauduviniche L, Rebellato J, Silvera-Pérez E, Mondino P (2012) First report of Pestalotiopsis clavispora causing dieback on blueberry in Uruguay. Plant Dis 96:914–914

    Article  PubMed  Google Scholar 

  • González-Domínguez E, Alves A, León M, Armengol J (2016) Characterization of Botryosphaeriaceae species associated with diseased loquat (Eriobotrya japonica) in Spain. Plant Pathol 66:77–89

    Article  CAS  Google Scholar 

  • Gordillo A, Decock C (2018) Cylindrocarpon-like (ascomycota, hypocreales) species from the Amazonian rain forests in Ecuador: additions to Campylocarpon and Dactylonectria. Cryptogam Mycol 38:409–434

    Article  Google Scholar 

  • Görg M, Ploch S, Kruse J, Kummer V, Runge F, Choi YJ, Thines M (2017) Revision of Plasmopara (Oomycota, Peronosporales) parasitic to impatiens. Mycol Prog 16:791–799

    Article  Google Scholar 

  • Gräfenhan T, Schroers HJ, Nirenberg HI, Seifert KA (2011) An overview of the taxonomy, phylogeny, and typification of nectriaceous fungi in Cosmospora, Acremonium, Fusarium, Stilbella and Volutella. Stud Mycol 68:79–113

    Article  PubMed  PubMed Central  Google Scholar 

  • Griffin WM, Maublanc A (1909) Sur une maladie du cacaoyer. Bull Soc Mycol Fr 25:51–58

    Google Scholar 

  • Guba EF (1961) Monograph of pestalotia and monochaetia. Harvard University Press, Cambridge

    Google Scholar 

  • Guo LD, Huang GR, Wang YU, He WH, Zheng WH, Hyde KD (2003) Molecular identification of white morphotype strains of endophytic fungi from Pinus tabulaeformis. Mycol Res 107:680–688

    Article  CAS  PubMed  Google Scholar 

  • Gupta C, Dubey R, Maheshwari D (2002) Plant growth enhancement and suppression of Macrophomina phaseolina causing charcoal rot of peanut by fluorescent Pseudomonas. Biol Fertil Soils 35:399–405

    Article  CAS  Google Scholar 

  • Gutiérrez de Sanguinetti MM (1988) Exomorfología y anatomía de los tumores en Nothofagus antarctica (Fagaceae) atribuidos a Cyttaria harioti y Cyttaria hookeri (Cytariaceae)

  • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95–98

    CAS  Google Scholar 

  • Halleen F, Crous PW, Petrini O (2003) Fungi associated with healthy grapevine cuttings in nurseries, with special reference to pathogens involved in the decline of young vines. Australas Plant Pathol 32:47–52

    Article  Google Scholar 

  • Halleen F, Schroers HJ, Groenewald JZ, Crous PW (2004) Novel species of Cylindrocarpon (Neonectria) and Campylocarpon gen. nov. associated with black foot disease of grapevines (Vitis spp.). Stud Mycol 50:431–455

    Google Scholar 

  • Halleen F, Schroers HJ, Groenewald JZ, Rego C, Oliveira H, Crous PW (2006) Neonectria liriodendri sp. nov., the main causal agent of black foot disease of grapevines. Stud Mycol 55:227–234

    Article  PubMed  PubMed Central  Google Scholar 

  • Herath K, Jayasuriya H, Zink DL, Sigmund J, Vicente F, de la Cruz M, Basilio A, Bills GF, Polishook JD, Donald R, Phillips J, Goetz M, Singh SB (2012) Isolation, structure elucidation, and antibacterial activity of methiosetin, a tetramic acid from a tropical sooty mold (Capnodium sp.). J Nat Prod 75:420–424

    Article  CAS  PubMed  Google Scholar 

  • Himelick EB (1969) Tree and shrub hosts of Verticillium albo–atrum. Biological notes no. 066

  • Hirooka Y, Kobayashi T, Natsuaki KT (2005) Neonectria castaneicola and Neo. rugulosa in Japan. Mycologia 97:1058–1066

    Article  CAS  PubMed  Google Scholar 

  • Höhnel F (1919) Fünfte vorläufige Mitteilung mykologische Ergebnisse (Nr. 300–500). Ber Dtsch Botanischen Ges 37:153–161

    Google Scholar 

  • Hongsanan S, Tian Q, Bahkali AH, Yang JB, Mckenzie EH, Chomnunti P, Hyde KD (2015) Zeloasperisporiales ord. nov., and two new species of Zeloasperisporium. Cryptogam Mycol 36:301–318

    Article  Google Scholar 

  • Hongsanan S, Zhao RL, Hyde KD (2017) A new species of Chaetothytina on branches of mango, and introducing Phaeothecoidiellaceae fam. nov. Mycosphere 8:137–146

    Article  Google Scholar 

  • Horikawa T (1986) Yield loss of new tea shoots due to tea gray blight caused by Pestalotia longiseta SPEGAZZINI. Bulletin of the Shizuoka Tea Experiment Station, Japan

  • Hsieh HM, Lin CR, Fang MJ, Rogers JD, Fournier J, Lechat C, Ju YM (2010) Phylogenetic status of Xylaria subgenus Pseudoxylaria among taxa of the subfamily Xylarioideae (Xylariaceae) and phylogeny of the taxa involved in the subfamily. Mol Phylogenet Evol 54:957–969

    Article  CAS  PubMed  Google Scholar 

  • Hu H, Jeewon R, Zhou D, Zhou T, Hyde KD (2007) Phylogenetic diversity of endophytic Pestalotiopsis species in Pinus armandii and Ribes spp.: evidence from rDNA and β-tubulin gene phylogenies. Fungal Divers 24:1–22

    CAS  Google Scholar 

  • Hughes SJ (2003) Capnofrasera dendryphioides, a new genus and species of sooty moulds. N Z J Bot 41:139–146

    Article  Google Scholar 

  • Hughes SJ, Seifert KA (2012) Taxonomic and nomenclatural notes on sooty mould name based on species mixtures: Hormiscium handelii and Torula lecheriana. Mycoscience 53:17–24

    Article  Google Scholar 

  • Hyde KD, Jones EBG, Liu JK, Ariyawansha H, Boehm E, Boonmee S, Braun U, Chomnunti P, Crous PW, Dai DQ, Diederich P, Dissanayake A, Doilom M, Doveri F, Hongsanan S, Jayawardena R, Lawrey JD, Li YM, Liu YX, Lücking R, Monkai J, Muggia L, Nelsen MP, Pang KL, Phookamsak R, Senanayake IC, Shearer CA, Suetrong S, Tanaka K, Thambugala KM, Wijayawardene NN, Wikee S, Wu HX, Zhang Y, Aguirre-Hudson B, Alias SA, Aptroot A, Bahkali AH, Bezerra JL, Bhat DJ, Camporesi E, Chukeatirote E, Gueidan C, Hawksworth DL, Hirayama K, De Hoog S, Kang JC, Knudsen K, Li WJ, Li XH, Liu ZY, Mapook A, McKenzie EHC, Miller AN, Mortimer PE, Phillips AJL, Raja HA, Scheuer C, Schumm F, Taylor JE, Tian Q, Tibpromma S, Wanasinghe DN, Wang Y, Xu JC, Yacharoen S, Yan JY, Zhang M (2013) Families of Dothideomycetes. Fungal Divers 63:1–313

    Article  Google Scholar 

  • Hyde KD, Nilsson RH, Alias SA, Ariyawansa HA, Blair JE, Cai L, de Cock AWAM, Dissanayake AJ, Glockling SL, Goonasekara ID, Gorczak M, Hahn M, Jayawardena RS, van Kan JAL, Laurence MH, Lévesque CA, Li X, Liu JK, Maharachchikumbura SSN, Manamgoda DS, Martin FN, McKenzie EHC, McTaggart AR, Mortimer PE, Nair PVR, Pawłowska J, Rintoul TL, Shivas RG, Spies CFJ, Summerell BA, Taylor PWJ, Terhem RB, Udayanga D, Vaghefi N, Walther G, Wilk M, Wrzosek M, Xu JC, Yan JY, Zhou N (2014) One stop shop:backbones trees for important phytopathogenic genera: I. Fungal Divers 67:21–125

    Article  Google Scholar 

  • Hyde KD, Hongsanan S, Jeewon R, Bhat DJ, McKenzie EHC, Jones EBG, Phookamsak R, Ariyawansa HA, Boonmee S, Zhao Q, Abdel-Aziz FA, Abdel-Wahab MA, Banmai S, Chomnunti P, Cui BK, Daranagama DA, Das K, Dayarathne MC, de Silva NI, Dissanayake AJ, Doilom M, Ekanayaka AH, Gibertoni TB, Góes-Neto A, Huang SK, Jayasiri SC, Jayawardena RS, Konta S, Lee HB, Li WJ, Lin CG, Liu JK, Lu YZ, Luo ZL, Manawasinghe IS, Manimohan P, Mapook A, Niskanen T, Norphanphoun C, Papizadeh M, Perera RH, Phukhamsakda C, Richter C, de Santiago ALCM, Drechsler-Santos ER, Senanayake IC, Tanaka K, Tennakoon TMDS, Thambugala KM, Tian Q, Tibpromma S, Thongbai B, Vizzini A, Wanasinghe DN, Wijayawardene NN, Wu HX, Yang J, Zeng XY, Zhang H, Zhang JF, Bulgakov TS, Camporesi E, Bahkali AH, Amoozegar MA, Araujo-Neta LS, Ammirati JF, Baghela A, Bhatt RP, Bojantchev D, Buyck B, da Silva GA, de Lima CLF, de Oliveira RJV, de Souza CAF, Dai YC, Dima B, Duong TT, Ercole E, Mafalda-Freire F, Ghosh A, Hashimoto A, Kamolhan S, Kang JC, Karunarathna SC, Kirk PM, Kytövuori I, Lantieri A, Liimatainen K, Liu ZY, Liu XZ, Lücking R, Medardi G, Mortimer PE, Nguyen TTT, Promputtha I, Raj KNA, Reck MA, Lumyong S, Shahzadeh-Fazeli SA, Stadler M, Soudi MR, Su HY, Takahashi T, Tangthirasunun N, Uniyal P, Wang Y, Wen TC, Xu JC, Zhang ZK, Zhao YC, Zhou JL, Zhu L (2016) Fungal diversity notes 367–490: taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 80:1–270

    Article  Google Scholar 

  • Hyde KD, Norphanphoun C, Abreu VP, Bazzicalupo A, Chethana KWT, Clericuzio M, Dayarathne MC, Dissanayake AJ, Ekanayaka AH, He MQ, Hongsanan S, Huang SK, Jayasiri SC, Jayawardena RS, Karunarathna A, Konta S, Kušan I, Lee H, Li J, Lin CG, Liu NG, Lu YZ, Luo ZL, Manawasinghe IS, Mapook A, Perera RH, Phookamsak R, Phukhamsakda C, Siedlecki I, Soares AM, Tennakoon DS, Tian Q, Tibpromma S, Wanasinghe DN, Xiao YP, Yang J, Zeng XY, Abdel-Aziz FA, Li WJ, Senanayake IC, Shang QJ, Daranagama DA, de Silva NI, Thambugala KM, Abdel-Wahab MA, Bahkali AH, Berbee ML, Boonmee S, Bhat DJ, Bulgakov TS, Buyck B, Camporesi E, Castañeda-Ruiz RF, Chomnunti P, Doilom M, Dovana F, Gibertoni TB, Jadan M, Jeewon R, Jones EBG, Kang JC, Karunarathna SC, Lim YW, Liu JK, Liu ZY, Plautz HL Jr, Lumyong S, Maharachchikumbura SSN, Matočec N, McKenzie EHC, Mešić A, Miller D, Pawłowska J, Pereira OL, Promputtha I, Romero AI, Ryvarden L, Su HY, Suetrong S, Tkalčec Z, Vizzini A, Wen TC, Wisitrassameewong K, Wrzosek M, Xu JC, Zhao Q, Zhao RL, Mortimer PE (2017) Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species. Fungal Divers 87:1–235

    Article  Google Scholar 

  • Hyde KD, Chaiwan N, Norphanphoun C, Boonmee S, Camporesi E, Chethana KWT, Dayar-athne MC, de Silva NI, Dissanayake AJ, Ekanayaka AH, Hongsanan S, Huang SK, Jayasiri SC, Jayawardena RS, Jiang HB, Karunarathna A, Lin CG, Liu JK, Liu NG, Lu YZ, Luo ZL, Maharachchimbura SSN, Manawasinghe IS, Pem D, Perera RH, Phukhamsakda C, Samarakoon MC, Senwanna C, Shang QJ, Tennakoon DS, Thambugala KM, Tibpromma S, Wanasinghe DN, Xiao YP, Yang J, Zeng XY, Zhang JF, Zhang SN, Bulgakov TS, Bhat DJ, Cheewangkoon R, Goh TK, Jones EBG, Kang JC, Jeewon R, Liu ZY, Lumyong S, Kuo CH, McKenzie EHC, Wen TC, Yan JY, Zhao Q (2018) Mycosphere notes 169–224. Mycosphere 9:271–430

    Article  Google Scholar 

  • Inderbitzin P, Bostock RM, Davis RM, Usami T, Platt HW, Subbarao KV (2011) Phylogenetics and taxonomy of the fungal vascular wilt pathogen Verticillium, with the descriptions of five new species. PLoS ONE 6:e28341

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Index Fungorum (2019) http://www.indexfungorum.org/names/Names.asp

  • Jacob M, Bhat DJ (2000) Two new endophytic fungi from India. Cryptogam Mycol 21:81–88

    Article  Google Scholar 

  • Jaklitsch WM, Gardiennet A, Voglmayr H (2016) Resolution of morphology-based taxonomic delusions: Acrocordiella, Basiseptospora, Blogiascospora, Clypeosphaeria, Hymenopleella, Lepteutypa, Pseudapiospora, Requienella, Seiridium and Strickeria. Persoonia 37:82–105

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jami F, Slippers B, Wingfield MJ, Gryzenhout M (2012) Five new species of the Botryosphaeriaceae from Acacia Karroo in South Africa. Cryptogam Mycol 33:245–267

    Article  Google Scholar 

  • Jami F, Slippers B, Wingfield MJ, Gryzenhout M (2014) Botryosphaeriaceae species overlap on four unrelated, native South African hosts. Fungal Biol 118:168–179

    Article  PubMed  Google Scholar 

  • Jayasiri SC, Hyde KD, Jones EBG, McKenzie EHC, Jeewon R, Phillips AJL, Bhat DJ, Wanasinghe DN, Liu JK, Lu YZ, Kang JC, Xu J, Karunarathna SC (2019) Diversity, morphology and molecular phylogeny of Dothideomycetes on decaying wild seed pods and fruits. Mycosphere 10:1–186

    Article  Google Scholar 

  • Jayawardena RS, Zhang W, Liu M, Maharachchikumbura SS, Zhou Y, Huang J, Nilthong S, Wang Z, Li X, Yan J, Hyde KD (2015) Identification and characterization of Pestalotiopsis-like fungi related to grapevine diseases in China. Fungal Biol 119:348–361

    Article  PubMed  Google Scholar 

  • Jayawardena RS, Liu M, Maharachchikumbura SS, Zhang W, Xing Q, Hyde KD, Nilthong S, Li X, Yan J (2016) Neopestalotiopsis vitis sp. nov. causing grapevine leaf spot in China. Phytotaxa 258:63–74

    Article  Google Scholar 

  • Jayawardena RS, Hyde KD, Jeewon R, Ghobad-Nejhad M, Wanasinghe DN, Liu N, Phillips AJL, Oliveira-Filho JRC, da Silva GA, Gibertoni TB, Abeywikrama P, Carris LM, Chethana KWT, Dissanayake AJ, Hongsanan S, Jayasiri SC, McTaggart AR, Perera RH, Phutthacharoen K, Savchenko KG, Shivas RG, Thongklang N, Dong W, Wei D, Wijayawardena NN, Kang JC (2019) One stop shop II: taxonomic update with molecular phylogeny for important phytopathogenic genera: 26–50. Fungal Divers 94(1):41–129

    Article  Google Scholar 

  • Jeewon R, Liew EC, Simpson JA, Hodgkiss IJ, Hyde KD (2003) Phylogenetic significance of morphological characters in the taxonomy of Pestalotiopsis species. Mol Phylogenet Evol 27:372–383

    Article  CAS  PubMed  Google Scholar 

  • Ju YM, Rogers JD, Hsieh HM, Vasilyeva L (2004) Amphirosellinia gen. nov. and a new species of Entoleuca. Mycologia 96:1393–1402

    Article  PubMed  Google Scholar 

  • Kaliterna J, Milicevic T, Bencic D, Mesic A (2016) First report of Verticillium wilt caused by Verticillium dahliae on Olive trees in Croatia. Plant Dis 100:2526–2526

    Article  Google Scholar 

  • Kamoun S, Furzer O, Jones JD, Judelson HS, Ali GS, Dalio RJ, Roy SG, Schena L, Zambounis A, Panabières F, Cahill D (2015) The Top 10 oomycete pathogens in molecular plant pathology. Mol Plant Pathol 16:413–434

    Article  PubMed  Google Scholar 

  • Kasanen R, Hantula J, Ostry M, Pinon J, Kurkela T (2004) North American populations of Entoleuca mammata are genetically more variable than populations in Europe. Mycol Res 108:766–774

    Article  CAS  PubMed  Google Scholar 

  • Kassemeyer HH (2017) Fungi of grapes. In: König H, Unden G, Fröhlich J (eds) Biology of microorganisms on grapes, in must and in wine. Springer, Cham, pp 103–132

    Chapter  Google Scholar 

  • Katoh K, Toh H (2008) Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinform 9:286–298

    Article  CAS  PubMed  Google Scholar 

  • Keinath AP (2013) Diagnostic guide for gummy stem blight and black rot on cucurbits. Plant Health Prog 14:35

    Article  Google Scholar 

  • Kim YK, Xiao CL, Rogers JD (2005) Influence of culture media and environmental factors on mycelial growth and pycnidial production of Sphaeropsis pyriputrescens. Mycologia 97:25–32

    Article  CAS  PubMed  Google Scholar 

  • Kirk PM, Cannon PF, Minter DW, Stalpers JA (2008) Dictionary of the fungi 10th edition. CAB International, Wallingford, UK

  • Kleina HT, Santos ÁFD, Duarte HDSS, Machado EB (2018) Physiological characterization of Rosellinia bunodes and symptomatology of Rosellinia root rot in poplar seedlings. Revista Árvore 42(1):e420111

    Article  Google Scholar 

  • Koehler AM, Shew HD (2018) First report of charcoal rot of stevia caused by Macrophomina phaseolina in North Carolina. Plant Dis 102:241–241

    Article  Google Scholar 

  • Korf RP (1973) Discomycetes and Tuberales. In: Ainsworth GC, Sparrow FK, Sussman AS (eds) The fungi: an advanced treatise, vol 4A. Academic press, London, pp 249–319

    Google Scholar 

  • Laemmlen FF (2011) Sooty mold. Integrated pest management for home gardeners and landscape professionals. Pest notes. University of California, Agriculture and Natural Resources, California, USA

    Google Scholar 

  • Læssøe T, Spooner BM (1994) Rosellinia and Astrocystis (Xylariaceae): new species and genetic concepts. Kew Bull 49:1–70

    Article  Google Scholar 

  • Læssøe T (1994) Index Ascomycetum 1. Xylariaceae. Syst Ascomycetum 13:43–112

    Google Scholar 

  • Land CJ, Lawrence KS, Newman M (2016) First report of Verticillium dahliae on Cotton in Alabama. APS publications 100

  • Laurence MH, Summerell BA, Burgess LW, Liew EC (2014) Genealogical concordance phylogenetic species recognition in the Fusarium oxysporum species complex. Fungal Biol 118:374–384

    Article  PubMed  Google Scholar 

  • Lawrence DP, Rotondo F, Gannibal PB (2016) Biodiversity and taxonomy of the pleomorphic genus Alternaria. Mycol Prog 15:3

    Article  Google Scholar 

  • Lee S, Crous PW, Wingfield MJ (2006) Pestalotioid fungi from Restionaceae in the Cape Floral Kingdom. Stud mycol 55:175–187

    Article  PubMed  PubMed Central  Google Scholar 

  • Léveillé JH (1847) Mycologie, mycétologie. D’Orbigny Dictionnaire univ d’Hist nat 9:261–303

    Google Scholar 

  • Li W, Guo L (2015) Rosellinia brunneola sp. nov. and R. beccariana new to China. Mycotaxon 130:233–236

    Article  Google Scholar 

  • Li Q, Kang J, Hyde KD (2015) Two new Rosellinia species from Southwest China. Mycotaxon 130(2):563–567

    Article  Google Scholar 

  • Li GJ, Hyde KD, Zhao RN, Hongsanan S, Abdel-Aziz FA, Abdel-Wahab MA, Alvarado P, Alves-Silva G, Ammirati JF, Ariyawansa HA, Baghela A, Bahkali AH, Beug M, Bhat DJ, Bojantchev D, Boonpratuang T, Bulgakov TS, Camporesi E, Boro MC, Ceska O, Chakraborty D, Chen JJ, Chethana KWT, Chomnunti P, Consiglio G, Cui BK, Dai DQ, Dai YC, Daranagama DA, Das K, Dayarathne MC, Crop ED, De Oliveira RJV, de Souza CAF, de Souza JI, Dentinger BTM, Dissanayake AJ, Doilom M, Drechsler-Santos ER, Ghobad-Nejhad M, Gilmore SP, Góes-Neto A, Gorczak M, Haitjema GH, Hapuarachchi KK, Hashimoto A, He MQ, Henske JK, Hirayama K, Iribarren MJ, Jayasiri SC, Jayawardena RS, Jeon SJ, Jesus AL, Jerônimo GH, Jones EBG, Kang JC, Karunarathna SC, Kirk PM, Konta S, Kuhnert E, Langer E, Lee HS, Lee HB, Li WJ, Li XH, Liimatainen K, Lima DX, Lin CG, Liu JK, Liu XZ, Liu ZY, Luangsaard JJ, Lücking R, Lumbsch HT, Lumyong S, Leaño EM, Marano AV, Matsumura M, McKenzie EHC, Mongkol-samrit S, Mortimer PE, Nguyen TTT, Niskanen T, Norphan-phoun C, O’Malley MA, Parnmen S, Pawłowska J, Perera RH, Phookamsak R, Phukhamsakda C, Pires-Zottarelli CLA, Raspé O, Reck MA, Rocha SCO, de Santiago ALCMA, Senanayake IC, Setti L, Shang QJ, Singh SK, Sir EB, Solomon KV, Song J, Srikitikulchai P, Stadler M, Suetrong S, Takahashi H, Takahashi T, Tanaka K, Tang LP, Thambugala KM, Thanakitpipattana D, Theodorou MK, Thongbai B, Thummarukcharoen T, Tian Q, Tibpromma S, Verbeken A, Vizzini A, Vlasák J, Voigt K, Wanasinghe DN, Wang Y, Weerakoon G, Wen HA, Wen TC, Wijayawardene NN, Wongkanoun S, Wrzosek M, Xiao YP, Xu JC, Yan JY, Yang J, Yang SD, Hu Y, Zhang JF, Zhao J, Zhou LW, Persoh D, Phillips AJL, Maharachchikumbura SSN (2016) Fungal diversity notes 253–366: taxonomic and phylogeneticcontributions to fungal taxa. Fungal Divers 78:1–237

    Article  CAS  Google Scholar 

  • Liu JK, Hyde KD, Jones EBG, Ariyawansa HA, Bhat DJ, Boonmee S, Maharachchikumbura SSN, McKenzie EHC, Phookamsak R, Phukhamsakda C, Shenoy BD, Abdel-Wahab MA, Buyck B, Chen J, Chethana KWT, Singtripop C, Dai DQ, Dai YC, Daranagama DA, Dissanayake AJ, Doliom M, Dsouza MJ, Fan XL, Goonasekara ID, Hirayama K, Hongsanan S, Jayasiri SC, Jayawardena RS, Karunarathna SC, Li WJ, Mapook A, Norphanphoun C, Pang KL, Perera RH, Peršoh D, Pinruan U, Senanayake IC, Somrithipol S, Suetrong S, Tanaka K, Thambugala KM, Tian Q, Tibpromma S, Udayanga D, Wijayawardene NN, Wanasinghe D, Wisitrassameewong K, Zeng XY, Abdel-Aziz FA, Adamčík S, Bahkali AH, Boonyuen N, Bulgakov T, Callac P, Chomnunti P, Greiner K, Hashimoto A, Hofstetter V, Kang JC, Lewis D, Li XH, Liu ZY, Liu ZY, Matumura M, Mortimer PE, Rambold R, Randrianjohany E, Sato G, Indrasutdhi VS, Tian CM, Verbeken A, Brackel W, Wang Y, Wen TC, Xu JC, Yan JY, Zhao RL, Camporesi E (2015) Fungal diversity notes 1-100: taxonomic and phylogenetic contributions to fungal species. Fungal Divers 72:1–197

    Article  CAS  Google Scholar 

  • LoBuglio KF, Pfister DH (2010) Placement of Medeolaria farlowii in the Leotiomycetes, and comments on sampling within the class. Mycol Prog 9(3):361–368

    Article  Google Scholar 

  • Lo Giudice V, Raudino F, di San Lio RM, Cacciola SO, Faedda R, Pane A (2010) First report of a decline and wilt of young Olive trees caused by simultaneous infections of Verticillium dahliae and Phytophthora palmivora in Sicily. Plant Dis 94:1372–1373

    Article  CAS  PubMed  Google Scholar 

  • Lombard L, Bezuidenhout CM, Crous PW (2013) Ilyonectria black foot rot associated with Proteaceae. Australas Plant Pathol 42:337–349

    Article  Google Scholar 

  • Lombard L, Van Der Merwe A, Groenewald JZ, Crous PW (2014) Lineages in Nectriaceae: re-evaluating the generic status of Ilyonectria and allied genera. Phytopathol Mediterr 1:515–532

    Google Scholar 

  • Lombard L, van der Merwe NA, Groenewald JZ, Crous PW (2015) Generic concepts in Nectriaceae. Stud Mycol 80:189–245

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lombard L, Sandoval-Denis M, Lamprecht SC, Crous PW (2018) Epitypification of Fusarium oxysporum – clearing the taxonomic chaos. Persoonia 43:1–47

    PubMed  PubMed Central  Google Scholar 

  • Lombard L, Van Doorn R, Crouse PW (2019) Neotypification of Fusarium chlamydosporuma reappraisal of a clinically important species complex. Fungal Syst Evol 4:183–200

    PubMed  PubMed Central  Google Scholar 

  • Luo J, Zhuang W-Y (2010a) Chaetopsinectria (Nectriaceae, Hypocreales), a new genus with Chaetopsina anamorphs. Mycologia 102:976–984

    Article  PubMed  Google Scholar 

  • Luo J, Zhuang W-Y (2010b) Three new species of Neonectria (Nectriaceae, Hypocreales) with notes on their phylogenetic positions. Mycologia 102:142–152

    Article  CAS  PubMed  Google Scholar 

  • Madrid H, Hernandez-Restrepo M, Gené J, Cano J, Guarro J, Silva V (2016) New and interesting chaetothyrialean fungi from Spain. Mycol Prog 15:1179–1201

    Article  Google Scholar 

  • Maharachchikumbura SS, Guo LD, Chukeatirote E, Chukeatirote AH, Hyde KD (2011) Pestalotiopsis-morphology, phylogeny, biochemistry and diversity. Fungal Divers 50:167

    Article  Google Scholar 

  • Maharachchikumbura SSN, Guo LD, Cai L, Chukeatirote E, Wu WP, Sun X, Crous PW, Bhat DJ, McKenzie EHC, Bahkali AH, Hyde KD (2012) A multi-locus backbone tree for Pestalotiopsis, with a polyphasic characterization of 14 new species. Fungal Divers 56:95–129

    Article  Google Scholar 

  • Maharachchikumbura SSN, Chukeatirote E, Guo LD, Crous PW, Mckenzie EHC, Hyde KD (2013a) Pestalotiopsis species associ-ated with Camellia sinensis(tea). Mycotaxon 123:47–61

    Article  Google Scholar 

  • Maharachchikumbura SSN, Guo LD, Chukeatirote E, McKenzie EHC, Hyde KD (2013b) A destructive new disease of Syzygium samarangense in Thailand caused by the new species Pestalotiopsis samarangensis. Trop Plant Pathol 38:227–235

    Article  Google Scholar 

  • Maharachchikumbura SS, Hyde KD, Groenewald JZ, Xu J, Crous PW (2014a) Pestalotiopsis revisited. Stud Mycol 79:121–186

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Maharachchikumbura SS, Guo LD, Chukeatirote E, Hyde KD (2014b) Improving the backbone tree for the genus Pestalotiopsis; addition of P. steyaertii and P. magna sp. nov. Mycol Prog 13:617–624

    Article  Google Scholar 

  • Maharachchikumbura SS, Hyde KD, Jones EG, McKenzie EH, Huang SK, Abdel-Wahab MA, Daranagama DA, Dayarathne M, D’souza MJ, Goonasekara ID, Hongsanan S, Jayawardena RS, Kirk PM, Konta S, Liu JK, Lui ZY, Norphanphoun C, Pang KL, Perera RH, Senanayake IC, Shang Q, Shenoy BD, Xiao Y, Bahkali AH, Kang J, Somrothipol S, Suetrong S, Wen T, Xu J (2015) Towards a natural classification and backbone tree for Sordariomycetes. Fungal Divers 72:199–301

  • Maharachchikumbura SS, Guo LD, Liu ZY, Hyde KD (2016) Pseudopestalotiopsis ignota and Ps. camelliae spp. nov. associated with grey blight disease of tea in China. Mycol Prog 15:22

    Article  Google Scholar 

  • Maharachchikumbura SS, Larignon P, Al-Sadi AM, Zuo-Yi LIU (2017) Characterization of Neopestalotiopsis, Pestalotiopsis and Truncatella species associated with grapevine trunk diseases in France. Phytopathol Mediterr 55:380–390

    Google Scholar 

  • Mantiri FR, Samuels GJ, Rahe JE, Honda BM (2001) Phylogenetic relationships in Neonectria species having Cylindrocarpon anamorphs inferred from mitochondrial ribosomal DNA sequences. Canad J Bot 79:334–340

    Article  CAS  Google Scholar 

  • Maryani N, Lombard L, Poerba YS, Subandiyah S, Crous PW, Kema GH (2019a) Phylogeny and genetic diversity of the banana Fusarium wilt pathogen Fusarium oxysporum f. sp. cubense in the Indonesian centre of origin. Stud Mycol 92:155–194

    Article  CAS  PubMed  Google Scholar 

  • Maryani N, Sandoval-Denis M, Lombard L, Crous PW, Kema GHJ (2019b) New endemic Fusarium species hitch-hiking with pathogenic Fusarium strains causing Panama disease in small-holder banana plots in Indonesia. Persoonia 43:48–69

    PubMed  PubMed Central  Google Scholar 

  • Matsushima T (1987) Matsushima. Mycol Mem 5:1–100

    Google Scholar 

  • Mayfield DA, Karakaya A, Batzer JC, Blaser JM, Gleason ML (2012) Diversity of sooty blotch and flyspeck fungi from apples in northeastern Turkey. Eur J Plant Pathol 135:805–815

    Article  Google Scholar 

  • McNeill J, Barrie FR, Buck WR, Demoulin V, Greuter W, Hawksworth DL, Herendeen PS, Knapp S, Marhold K, Prado J, van Reine WFP, Smith GE, Wiersema JH, Turland NJ (eds) (2012) International code of nomenclature for algae, fungi, and fungal diversity plants (Melbourne Code), Adopted by the Eighteenth International Botanical Congress Melbourne, Australia, July 2011

  • McTaggart AR, Shuey LS, McKenna SG, Davis RI, Shivas RG (2015) Plasmopara sphagneticolae sp. nov. (Peronosporales) on Sphagneticola (Asteraceae) in Australia. Australas Plant Pathol 44:81–85

    Article  Google Scholar 

  • Meena BR, Nagendran K, Tripathi AN, Kumari S, Sagar V, Gupta N, Rai AB, Singh B (2018) First report of charcoal rot caused by Macrophomina phaseolina in Basella alba in India. Plant Dis 102(8):1669

    Article  Google Scholar 

  • Mengoni T (1986) El aparato apical del asco de Cyttaria harioti (Ascomycetes, Cyttariales) con microscopia fotonica y electronica. Bol Soc Argent Bot 24:393–401

    Google Scholar 

  • Miller JH (1928) Biologic studies in the Sphaeriales—I. Mycologia 20:187–213

    Google Scholar 

  • Miller MA, Pfeiffer W, Schwartz T (2010) Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: 2010 gateway computing environments workshop (GCE), pp 1–8. IEEE

  • Montagne JFC (1834) Notice sur les plantes cryptogames récemment découvertes en France contenant aussi l’indication précis des localités de quelques espèces les plus rares de la flore française. Ann Sci Nat Bot Sér 2:295–307

    Google Scholar 

  • Montagne C (1849) Capnodium, novum Fungorum genus

  • Morton A, Carder JH, Barbara DJ (1995) Sequences of the internal transcribed spacers of the ribosomal RNA genes and relationships between isolates of Verticillium alboatrum and V. dahliae. Plant Pathol 44:183–190

    Article  CAS  Google Scholar 

  • Nag Raj TR (1985) Redisposals and redescriptions in the Monochaetia-Seiridium, Pestalotia-Pestalotiopsis complexes. II. Pestalotiopsis besseyii (Guba) comb. nov. and Pestalosphaeria varia sp. nov. Mycotaxon 22:43–75

    Google Scholar 

  • NagRaj TR (1993) Coelomycetous anamorphs with appendage-bearing conidia. Mycologue Publications, Waterloo, ON

    Google Scholar 

  • Nalim FA, Samuels GJ, Wijesundera RL, Geiser DM (2011) New species from the Fusarium solani species complex derived from perithecia and soil in the old World tropics. Mycologia 103:1302–1330

    Article  PubMed  Google Scholar 

  • Ndiaye M, Termorshuizen AJ, van Bruggen AHC (2010) Effects of compost amendment and the biocontrol agent Clonostachys rosea on the development of charcoal rot (Macrophomina phaseolina) on cowpea. J Plant Pathol 92:173–180

    Google Scholar 

  • Nees von Esenbeck CDG (1816) System der Pilze und Schwämme. Stahelschen Buchhandlung, Würtzburg

    Google Scholar 

  • Norphanphoun C, Doilom M, Daranagama DA, Phookamsak R, Wen TC, Bulgakov TS, Hyde KD (2017) Revisiting the genus Cytospora and allied species. Mycosphere 8:51–97

    Article  Google Scholar 

  • Norphanphoun C, Raspé O, Jeewon R, Wen TC, Hyde KD (2018) Morphological and phylogenetic characterisation of novel Cytospora species associated with mangroves. MycoKeys 38:93–120

    Article  Google Scholar 

  • Nylander JAA, Wilgenbusch JC, Warren DL, Swofford DL (2008) AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 24:581–583

    Article  CAS  PubMed  Google Scholar 

  • O’Donnell K (2000) Molecular phylogeny of the Nectria haematococca-Fusarium solani species complex. Mycologia 92:919–938

    Article  Google Scholar 

  • O’Donnell K, Kistler HC, Cigelnik E, Ploetz RC (1998a) Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies. Proc Natl Acad Sci USA 95:2044–2049

    Article  PubMed  PubMed Central  Google Scholar 

  • O’Donnell K, Cigelnik E, Casper HH (1998b) Molecular phylogenetic, morphological, and mycotoxin data support reidentification of the Quorn mycoprotein fungus as Fusarium venenatum. Fungal Genet Biol 23:57–67

    Article  PubMed  Google Scholar 

  • O’Donnell K, Kistler HC, Tacke BK, Casper HH (2000) Gene genealogies reveal global phylogeographic structure and reproductive isolation among lineages of Fusarium graminearum, the fungus causing wheat scab. Proc Natl Acad Sci USA 97:7905–7910

    Article  PubMed  PubMed Central  Google Scholar 

  • O’Donnell K, Rooney AP, Proctor RH, Brown DW, McCormick SP, Ward TJ, Frandsen RJ, Lysøe E, Rehner SA, Aoki T, Robert VA (2013) Phylogenetic analyses of RPB1 and RPB2 support a middle Cretaceous origin for a clade comprising all agriculturally and medically important fusaria. Fungal Gen Biol 52:20–31

    Article  CAS  Google Scholar 

  • Oliveira ML, Melo GL, Niella ARR, Silva VR (2008) Black root rot caused by Rosellinia pepo, a new disease of the clove tree in Brazil. Tropical Plant Pathol 33:90–95

    Article  Google Scholar 

  • Ostry ME (2013) Hypoxylon canker. Infectious Forest Diseases, p 407

  • Pace-Lupi TG, Porta-Puglia A, Ippolito A, Nigro F (2006) First record of Verticillium dahliae on potato in Malta. Plant Dis 90:1108–1108

    Article  CAS  PubMed  Google Scholar 

  • Pal KK, Tilak KVBR, Saxcna AK, Dey R, Singh CS (2001) Suppression of maize root diseases caused by Macrophomina phaseolina, Fusarium moniliforme and Fusarium graminearum by plant growth promoting rhizobacteria. Microbiol Res 156:209–223

    Article  CAS  PubMed  Google Scholar 

  • Pantou MP, Strunnikova OK, Shakhnazarova VY, Vishnevskaya NA, Papalouka VG, Typas MA (2005) Molecular and immunochemical phylogeny of Verticillium species. Mycol Res 109:889–902

    Article  CAS  PubMed  Google Scholar 

  • Parker KG (1959) Verticillium hadromycosis of deciduous tree fruits. Plant disease reporter, suppl 255

  • Parkinson LE, Shivas RG, Dann EK (2017) Pathogenicity of nectriaceous fungi on avocado in Australia. Phytopathology 107:1479–1485

    Article  PubMed  Google Scholar 

  • Pasini L, Prodorutti D, Pastorelli S, Pertot I (2016) Genetic diversity and biocontrol of Rosellinia necatrix infecting apple in Northern Italy. Plant Dis 100:444–452

    Article  CAS  PubMed  Google Scholar 

  • Patouillard N, de Lagerheim G (1892) Champignons de l’Équateur (Pugillus II). Bull Soc Mycol Fr 8:113–140

    Google Scholar 

  • Pavlic D, Slippers B, Coutinho TA, Gryzenhout M, Wingfield MJ (2004) Lasiodiplodia gonubiensis sp. nov., a new Botryosphaeria anamorph from native Syzygium cordatum in South Africa. Stud Mycol 50:313–322

    Google Scholar 

  • Pegg GF, Brady BL (2002) Verticillium wilts. CABI Publishing, Oxford, UK

    Book  Google Scholar 

  • Peraldi A, Griffe LL, Burt C, McGrann GRD, Nicholson P (2014) Brachypodium distachyon exhibits compatible interactions with Oculimacula spp. and Ramularia collocygni, providing the first pathosystem model to study eyespot and ramularia leaf spot diseases. Plant Pathol 63:554–562

    Article  CAS  PubMed  Google Scholar 

  • Pérez-Jiménez RM (2006) A review of the biology and pathogenicity of Rosellinia necatrix—the cause of white root rot disease of fruit trees and other plants. J Phytopathol 154(5):257–266

    Article  Google Scholar 

  • Peterson KR, Pfister DH (2010) Phylogeny of Cyttaria inferred from nuclear and mitochondrial sequence and morphological data. Mycologia 102(6):1398–1416

    Article  PubMed  Google Scholar 

  • Peterson KR, Pfister DH, Bell CD (2010) Cophylogeny and biogeography of the fungal parasite Cyttaria and its host Nothofagus, southern beech. Mycologia 102(6):1417–1425

    Article  PubMed  Google Scholar 

  • Pethybridge SJ, Hay FS, Clarkson RA, Groom T, Wilson CR (2008) Host range of Australian Phoma ligulicola var inoxydablis isolates from pyrethrum. J Phytopathol 156(7–8):506–508

    Article  Google Scholar 

  • Petrini LE (1993) Rosellinia species of the temperate zones. Sydowia 44:169–281

    Google Scholar 

  • Petrini LE (2013) Rosellinia-a world monograph

  • Pfister DH, LoBuglio KF (2009) Placement of Medeolaria farlowii in the Leotiomycetes, and comments on sampling within the class. Mycol Prog 9:361–368

    Google Scholar 

  • Pfister DH, Agnello C, Lantieri A, LoBuglio KF (2013) The Caloscyphaceae (Pezizomycetes, Ascomycota), with a new genus. Mycol Progress 12(4):667–674

    Article  Google Scholar 

  • Phillips AJL, Alves A, Abdollahzadeh J, Slippers B, Wingfield MJ, Groenewald JZ, Crous PW (2013) The Botryosphaeriaceae: genera and species known from culture. Stud Mycol 76:51–167

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Phillips AJL, Alves A, Correia A, Luque J (2005) Two new species of Botryosphaeria with brown, 1-septate ascospores and Dothiorella anamorphs. Mycologia 97:513–529

    Article  PubMed  Google Scholar 

  • Phillips AJL, Alves A, Pennycook SR, Johnston PR, Ramaley A, Akulov A, Crous PW (2008) Resolving the phylogenetic and taxonomic status of dark-spored teleomorph genera in the Botryosphaeriaceae. Persoonia 21:29–55

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Phillips AJL, Lopes J, Abdollahzadeh J, Bobev S, Alves A (2012) Resolving the Diplodia complex on apple and other Rosaceae hosts. Persoonia 29:29–38

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Phookamsak R, Hyde KD, Jeewon R, Bhat DJ, Jones EBG, Maharachchikumbura SSN, Raspé O, Karunarathna SC, Wanas-inghe DN, Hongsanan S, Doilom M, Tennakoon DS, Firmino AL, Machado AR, Ghosh A, Karunarathna A, Mešsić A, Dutta AK, Thongbai B, Devadatha B, Norphanphoun C, Senwanna C, Wei D, Pem D, Ackah FK, Wang GN, Jiang HB, Madrid H, Lee HB, Goonasekara ID, Manawasinghe IS, Kušan Cano J, Gené J, Li J, Das K, Acharya K, Raj KNA, Latha KPD, Chethana KWT, He MQ, Duenas M, Jadan M, Martín MP, Dayarathne MC, Samarakoon MC, Raza M, Park MS, Telleria MT, Chaiwan N, Matočec N, de Silva NI, Pereira OL, Singh PN, Manimohan P, Uniyal P, Shang QJ, Bhatt RP, Perera RH, Alvarenga RLM, Nogal-Prata S, Singh SK, Vadthanarat S, Oh SY, Huang SK, Rana S, Konta S, Paloi S, Jayasiri SC, Jeon SJ, Mehmood T, Gibertoni TB, Nguyen TTT, Singh U, Thiyagaraja V, Sarma VV, Dong W, Yu XD, Lu YZ, Lim YW, Chen Y, Tkalčec Z, Zhang ZF, Luo ZL, Daranagama DA, Thambugala KM, Tibpromma S, Camporesi E, Bulgakov T, Dissanayake AJ, Senanayake IC, Dai DQ, Tang LZ, Khan S, Zhang H, Promputtha I, Cai L, Chomnunti P, Zhao RL, Lumyong S, Boonmee S, Wen TC, Mortimer PE, Xu J (2019) Fungal diversity notes 929–1036: taxonomic and phylogenetic contributions on genera and species of fungal taxa. Fungal Divers 95:1–273

    Article  Google Scholar 

  • Ploetz RC, Lim TK, Menge JA, Kenneth G, Rohrbach KG, Michaolides TJ (2003) Common pathogens of tropical fruit crops. Diseases of tropical fruit crops. CABI Publishing, Wallingford, pp 1–19

    Book  Google Scholar 

  • Powell M, Gundersen B, Miles C, Coats K, Inglis DA (2013) First report of Verticillium wilt on lettuce (Lactuca sativa) in Washington caused by Verticillium tricorpus. Plant Dis 97(7):996–997

    Article  CAS  PubMed  Google Scholar 

  • Punithalingam E (1976) Botryodiplodia theobromae. CMI descriptions of pathogenic fungi and bacteria, No. 519. Commonwealth Mycological Institute, Kew, Surrey, England

  • Punithalingam E (1980) Plant diseases attributed to Botryodiplodia theobromae. Pat J Cramer, Vaduz

    Google Scholar 

  • Quaedvlieg W, Binder M, Groenewald JZ, Summerell BA, Carnegie AJ, Burgess TI, Crous PW (2014) Introducing the consolidated species concept to resolve species in the Teratosphaeriaceae. Persoonia 33:1–40

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rampersad SN (2008) First report of Verticillium dahliae causing wilt in pumpkin in Trinidad. Plant Dis 92:1136–1136

    Article  CAS  PubMed  Google Scholar 

  • Rana A, Sahgal M, Johri BN (2017) Fusarium oxysporum: genomics, diversity and plant–host interaction. In: Satyanarayana T, Deshmukh S, Johri B (eds) Developments in fungal biology and applied mycology. Springer, Singapore, pp 159–199

    Chapter  Google Scholar 

  • Rawlings GB (1956) Australasian Cyttariaceae. New Zealand Forest Service

  • Réblová M, Untereiner WA, Réblová K (2013) Novel evolutionary lineagesrevealed in the Chaetothyriales (Fungi) based on multigene phylogenetic analyses and comparison of ITS secondary structure. PLoS ONE 8:e63547. https://doi.org/10.1371/journal.pone.0063547

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rees AA, Webber JF (1988) Pathogenicity of Sphaeropsis sapinea to seed, seedlings and saplings of some Central American pines. Trans Br Mycol Soc 91(2):273–277

    Article  Google Scholar 

  • Riethmüller A, Voglmayr H, Göker M, Weiß M, Oberwinkler F (2002) Phylogenetic relationships of the downy mildews (peronosporales) and related groups based on nuclear large subunit ribosomal dna sequences. Mycologia 94:834–849

    Article  PubMed  Google Scholar 

  • Reynolds DR, Gilbert GS (2005) Epifoliar fungi from Queensland, Australia. Aust Syst Bot 18(3):265–289

    Article  Google Scholar 

  • Rogers JD, Ju YM (1996) Entoleuca mammata comb. nov. for Hypoxylon mammatum and the genus Entoleuca. Mycotaxon 59:441

    Google Scholar 

  • Romero Luna MP, Mueller D, Mengistu A, Singh AK, Hartman GL, Wise KA (2017) Advancing our understanding of charcoal rot in soybeans. J Integr Pest Manag 8(1):8

    Article  Google Scholar 

  • Ronquist F, Huelsenbeck J (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574

    Article  CAS  PubMed  Google Scholar 

  • Rossi V, Caffi T, Bugiani R, Spanna F, Valle DD (2008) Estimating the germination dynamics of Plasmopara viticola oospores using hydro-thermal time. Plant Pathol 57(2):216–226

    Article  Google Scholar 

  • Rossman AY, Palm-Hernández ME (2008) Systematics of plant pathogenic fungi: why it matters. Plant Dis 92:1376–1386

    Article  PubMed  Google Scholar 

  • Rossman AY, Samuels GJ, Rogerson CT, Lowen R (1999) Genera of the Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Stud Mycol 42:1–248

    Google Scholar 

  • Rossman AY, Seifert KA, Samuels GJ, Minnis AM, Schroers HJ, Lombard L, Crous PW, Põldmaa K, Cannon PF, Summerbell RC, Geiser DM (2013) Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) proposed for acceptance or rejection. IMA Fungus 4:41–51

    Article  PubMed  PubMed Central  Google Scholar 

  • Rossman AY, Adams GC, Cannon PF, Castlerbury LA, Crous PW, Gryzenhout M, Jaklitsch WM, Mejia LC, Stoykov D, Udayanga D, Voglmayr H, Walker DM (2015) Recommendations of generic names in Diaporthales competing for protection or use. IMA Fungus 6:145–154

    Article  PubMed  PubMed Central  Google Scholar 

  • Rouxel M, Mestre P, Comont G, Lehman BL, Schilder A, Delmotte F (2013) Phylogenetic and experimental evidence for host specialized cryptic species in a biotrophic oomycete. New Phytol 197:251–263

    Article  PubMed  Google Scholar 

  • Rudolph BA (1931) Verticillium hadromycosis. Hilgardia 5:197–361

    Article  Google Scholar 

  • Runa F, Park MS, Pryor BM (2009) Ulocladium systematics revisited: phylogeny and taxonomic status. Mycol Prog 8:35

    Article  Google Scholar 

  • Saccardo PA (1884) Sylloge fungorum, vol 3. Typis Seminarii, Italy

    Google Scholar 

  • Saccardo PA (1880) Fungi gallici, ser. II. Michelia 2:38–135

    Google Scholar 

  • Samuels GJ, Brayford D (1990) Variation in Nectria radicicola and its anamorphs, Cylindrocarpon destructans. Mycol Res 94:433–442

    Article  Google Scholar 

  • Samuels GJ, Brayford D (1993) Phragmosporous Nectria species with Cylindrocarpon anamorphs. Sydowia 45:55–80

    Google Scholar 

  • Samuels GJ, Brayford D (1994) Species of Nectria (sensulato) with red perithecia and striate ascospores. Sydowia 46:75–161

    Google Scholar 

  • Sandoval-Denis M, Crous PW (2018) Removing chaos from confusion: assigning names to common human and animal pathogens in Neocosmospora. Persoonia 41:109–129

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sarr MP, Ndiaye MB, Groenewald JZ, Crous PW (2014) Genetic diversity in Macrophomina phaseolina, the causal agent of charcoal rot. Phytopathol Mediterr 53:250–268

    Google Scholar 

  • Schmitz S, Charlier A, Chandelier A (2017) First report of Neonectria neomacrospora on Abies grandis in Belgium. New Dis Rep 36:17

    Article  Google Scholar 

  • Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W (2012) Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci USA 109:6241–6246

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Schröter J (1886) Kryptogamen-Flora von Schlesien, vol 3(1). J. Cramer, Lehre, pp 129–256

    Google Scholar 

  • Seifert KA, McMullen CR, Yee D, Reeleder RD, Dobinson KF (2003) Molecular differentiation and detection of ginseng-adapted isolates of the root rot fungus Cylindrocarpon destructans. Phytopathology 93:1533–1542

    Article  CAS  PubMed  Google Scholar 

  • Senanayake IC, Crous PW, Groenewald JZ, Maharachchikumbura SSN, Jeewon R, Phillips AJL, Bhat JD, Perera RH, Li QR, Li WJ, Tangthirasunun N, Norphanphoun C, Karunarathna SC, Camporesi, E, Manawasighe IS, Al-Sadi AM, Hyde KD (2017) Families of Diaporthales based on morphological and phylogenetic evidence. Stud Mycol 86:217–296

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Senanayake IC, Jeewon R, Camporesi E, Hyde KD, Zeng YJ, Tian SL, Xie N (2018) Sulcisporasupratumida sp. nov. (Phaeosphaeriaceae, Pleosporales) on Anthoxanthum odoratum from Italy. MycoKeys 38:35–46

    Article  Google Scholar 

  • Shaw CG (1973) Host fungus index for the Pacific Northwest—I. Hosts. Wash Agric Exp Stat Bull 765:1–121

    Google Scholar 

  • Shimizu T, Ito T, Kanematsu S (2012) Transient and multivariate system for transformation of a fungal plant pathogen, Rosellinia necatrix, using autonomously replicating vectors. Curr Genet 58:129–138

    Article  CAS  PubMed  Google Scholar 

  • Simmons EG (1992) Alternaria taxonomy: current status, viewpoint, challenge. Alternaria biology, plant diseases and metabolites, pp 1–35

  • Silvestro D, Michalak I (2012) raxmlGUI: a graphical front-end for RAxML. Org Divers Evol 12:335–337

    Article  Google Scholar 

  • Singtripop C, Hongsanan S, Li J, De Silva NI, Phillips AJ, Jones GE, Bahkali AH, Hyde KD (2016) Chaetothyrina mangiferae sp. nov., a new species of Chaetothyrina. Phytotaxa 255:21–33

    Article  Google Scholar 

  • Sivanesan A (1984) The bitunicate ascomycetes and their anamorphs. J. Cramer, Vaduz, Liechtenstein

    Google Scholar 

  • Sivanesan A, Holliday P (1972) Rosellinia necatrix. CMI Descr Pathog Fungi Bact 352:1–2

    Google Scholar 

  • Slippers B, Crous PW, Denman S, Countinho TA, Wingfield BD, Wingfield MJ (2004a) Combined multiple gene genealogies and phenotypic characters differentiate several species previously identified as Botryosphaeria dothidea. Mycologia 96:83–101

    Article  CAS  PubMed  Google Scholar 

  • Slippers B, Fourie G, Crous PW, Countinho TA, Wingfield BD, Carnegie AJ, Wingfield MJ (2004b) Speciation and distribution of Botryosphaeria spp. on native and introduced Eucalyptus trees in Australia and South Africa. Stud Mycol 50:343–358

    Google Scholar 

  • Slippers B, Fourie G, Crous PW, Coutinho TA, Wingfield BD, Wingfield MJ (2004c) Multiple gene sequences delimit Botryosphaeria australis sp. nov. from B. lutea. Mycologia 96:1030–1041

    Article  CAS  PubMed  Google Scholar 

  • Slippers B, Boissin E, Phillips AJL, Groenewald JZ, Lombard L, Wingfield MJ, Postma A, Burgess T, Crous PW (2013) Phylogenetic lineages in the Botryosphaeriales: a systematic and evolutionary framework. Stud Mycol 76:31–49

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Slippers B, Roux J, Wingfield MJ, Van der Walt FJJ, Jami F, Mehl JWM, Marais GJ (2014) Confronting the constraints of morphological taxonomy in the Botryosphaeriales. Persoonia 33:155–168

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Solarte F, Muñoz CG, Maharachchikumbura SS, Álvarez E (2018) Diversity of Neopestalotiopsis and Pestalotiopsis spp., causal agents of guava scab in Colombia. Plant Dis 102:49–59

    Article  PubMed  Google Scholar 

  • Stark C (1961) Das Auftreten der Verticillium-Tracheomykosen in Hamburger Gartenbaukulturen: Ein Beitrag zur Kenntnis ihrer Erreger. Die Gartenbauwissenschaft 26:493–528

    Google Scholar 

  • Steenkamp ET, Wingfield BD, Desjardins AE, Marasas WFO, Wingfield MJ (2002) Cryptic speciation in Fusarium subglutinans. Mycologia 94:1032–1043

    Article  CAS  PubMed  Google Scholar 

  • Steyaert RL (1949) Contributions etude monographique de Pestalotia de Not. et Monochaetia Sacc. (Truncatella gen. nov. et Pestalotiopsis gen. nov.). Bull JardinBotanique de l’EtatBruxelles 19:285–354

    Google Scholar 

  • Su H, Li QR, Kang JC, Wen TC, Hyde KD (2016) Rosellinia convexa sp. nov. (Xylariales, Pezizomycotina) from China. Mycoscience 3:164–170

    Article  CAS  Google Scholar 

  • Sun FF, Sun SL, Zhu ZD (2016) Occurrence of Verticillium wilt caused by Verticillium dahliae on mung bean in Northern China. Plant Dis 100:1792–1792

    Article  Google Scholar 

  • Sutton BC (1977) Coelomycetes VI. Nomenclature of generic names proposed for Coelomycetes. Mycol Pap 141:1–253

    Google Scholar 

  • Sutton BC, Marasas WFO (1976) Observations on Neottiosporina and Tiarosporella. Trans Br Mycol Soc 67:69–76

    Article  Google Scholar 

  • Swofford D (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods) Version 4.0b10. Sinauer, Sunderland

    Google Scholar 

  • Sydow H, Petrak F (1922) EinBeitragzurKenntnisder PilzfloraNordamerikas, insbesondere der nordwestlichenStaaten. Ann Myco-logici 20:178–218

    Google Scholar 

  • Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Geiser DM, Hibbett DS, Fisher MC (2000) Phylogenetic species recognition and species concepts in fungi. Fungal Genet Biol 31:21–32

    Article  CAS  PubMed  Google Scholar 

  • Tennakoon DS, Phillips AJL, Phookamsak R, Ariyawansa HA, Bahkali AH, Hyde KD (2016) Sexual morph of Lasiodiplodia pseudotheobromae (Botryosphaeriaceae, Botryosphaeriales, Dothideomycetes) from China. Mycosphere 7:990–1000

    Article  Google Scholar 

  • ten Hoopen GM, Krauss U (2006) Biology and control of Rosellinia bunodes, Rosellinia necatrix and Rosellinia pepo: a review. Crop Prot 25:89–107

    Article  Google Scholar 

  • Tibpromma S, Hyde KD, Jeewon R, Maharachchikumbura SS, Liu JK, Bhat DJ, Jones EBG, McKenzie E, Camporesi E, Bulgakov TS, Doilom M, Santiago AM, Das K, Manimohan P, Gibertoni TB, Lim YW, Ekanayaka AH, Thongbai B, Lee HB, Yang J, Kirk PM, Sysouphanthong P, Singh SK, Boonmee S, Dong W, Raj KN, Latha KP, Phookamsak R, Phukhamsakda C, Konta S, Jayasiri SC, Norphanphoun C, Tennakoon D, Li J, Dayarathne MC, Perera RH, Xiao Y, Wanasinghe DN, Senanayake IC, Goonasekara ID, Silva NI, Mapook A, Jayawardena RS, Dissanayake AJ, Manawasinghe IS, Chethana KW, Luo Z, Hapuarachchi KK, Baghela A, Soares AM, Vizzini A, Meiras-Ottoni A, Mešić A, Dutta AK, Souza CA, Richter C, Lin C, Chakrabarty D, Daranagama DA, Lima DX, Chakraborty D, Ercole E, Wu F, Simonini G, Vasquez G, Silva GA, Plautz HL, Ariyawansa HA, Lee HS, Kušan I, Song J, Sun J, Karmakar J, Hu K, Semwal KC, Thambugala KM, Voigt K, Acharya K, Rajeshkumar KC, Ryvarden L, Jadan M, Hosen MI, Mikšík M, Samarakoon MA, Wijayawardene NN, Kim NK, Matočec N, Singh PN, Tian Q, Bhatt RP, Oliveira RJ, Tulloss RE, Aamir S, Kaewchai S, Marathe SD, Khan S, Hongsanan S, Adhikari S, Mehmood T, Bandyopadhyay TK, Svetasheva TY, Nguyen TT, Antonín V, Li W, Wang Y, Indoliya Y, Tkalčec Z, Elgorban AM, Bahkali AH, Tang A, Su H, Zhang H, Promputtha I, Luangsa-Ard J, Xu J, Yan J, Kang JC, Stadler M, Mortimer PE, Chomnunti P, Zhao Q, Phillips AJ, Nontachaiyapoom S, Wen T, Karunarathna SC (2017) Fungal diversity notes 491–602: taxonomic and phylogenetic contributions to fungal taxa. Fungal Divers 83:1–261

    Article  Google Scholar 

  • Thambugala KM, Daranagama DA, Camporesi E, Singtripop C, Liu Z-Y, Hyde KD (2014) Multi-locus phylogeny reveals the sexual state of Tiarosporella in Botryosphaeriaceae. Cryptogam Mycol 35:359–367

    Article  Google Scholar 

  • Thaxter R (1922) Note on two remarkable Ascomycetes. Proc Am Acad Arts Sci 57:425–436

    Article  Google Scholar 

  • Theissen FSJ (1913) Die Gattung Asterina. Abh Zool Botanischen Ges Wien 7:1–130

    Google Scholar 

  • Thines M, Kamoun S (2010) Oomycete-plant coevolution: recent advances and future prospects. Curr Opin Plant Biol 13:1–7

    Article  Google Scholar 

  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl Acids Res 25:4876–4882

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Thynne E, McDonald MC, Evans M, Wallwork H, Neate S, Solomon PS (2015) Reclassification of the causal agent of white grain disorder on wheat as three separate species of Eutiarosporella. Australas Plant Pathol 44:527–539

    Article  Google Scholar 

  • Trakunyingcharoen T, Lombard L, Groenewald JZ, Cheewangkoon R, To-Anun C, Crous PW (2015) Caulicolous Botryosphaeriales from Thailand. Persoonia 34:87–99

    Article  CAS  PubMed  Google Scholar 

  • Tsai I, Maharachchikumbura SS, Hyde KD, Ariyawansa HA (2018) Molecular phylogeny, morphology and pathogenicity of Pseudopestalotiopsis species on Ixora in Taiwan. Mycol Prog 17:941–952

    Article  Google Scholar 

  • Vaghefi N, Pethybridge SJ, Ford R, Nicolas ME, Crous PW, Taylor PWJ (2012) Stagonosporopsis spp. associated with ray blight disease of Asteraceae. Australas Plant Pathol 41:675–686

    Article  Google Scholar 

  • Vaghefi N, Hay FS, Pethybridge SJ, Ford R, Taylor PW (2016) Development of a multiplex PCR diagnostic assay for the detection of Stagonosporopsis species associated with ray blight of Asteraceae. Eur J Plant Pathol 146:581–595

    Article  CAS  Google Scholar 

  • Van der Meer JHH (1925) Verticillium wilt of herbaceous and woody plants. Meded Landbouwhogesch Wagening 28:1–82

    Google Scholar 

  • Varela CP, Casal OA, Padin MC, Martinez VF, Oses MS, Scauflaire J, Munaut F, Castro MB, Vázquez JM (2013) First report of Fusarium temperatum causing seedling blight and stalk rot on maize in Spain. Plant Dis 97:1252–1252

    Article  PubMed  Google Scholar 

  • Vitale A, Aiello D, Guarnaccia V, Perrone G, Stea G, Polizzi G (2012) First outbreak of root rot caused by Neonectria (Ilyonectria) macrodidyma on avocado (Persea americana). Eur J Phytopathol 160:156–159

    Article  Google Scholar 

  • Voglmayr H, Constantinescu O (2008) Revision and reclassification of three Plasmopara species based on morphological and molecular phylogenetic data. Mycol Res 112:487–501

    Article  CAS  PubMed  Google Scholar 

  • Voglmayr H, Riethmüller A, Göker M, Weiß M, Oberwinkler F (2004) Phylogenetic relationships of Plasmopara, Bremia and other genera of downy mildews with pyriform haustoria based on Bayesian analysis of partial LSU rDNA sequence data. Mycol Res 108:1011–1024

    Article  CAS  PubMed  Google Scholar 

  • Walz A, de Hoog GS (1987) A new species of Cyphellophora. Anton Leeuw Int J G 53:143–146

    Article  CAS  Google Scholar 

  • Wang Q, Coleman JJ (2019) CRISPR/Cas9-mediated endogenous gene tagging in Fusarium oxysporum. Fungal Genet Biol 126:17–24

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wang Z, Johnston PR, Takamatsu S, Spatafora JW, Hibbett DS (2006) Toward a phylogenetic classification of the Leotiomycetes based on rDNA data. Mycologia 98:1065–1075

    Article  CAS  PubMed  Google Scholar 

  • Wang H, Chen D, Li C, Tian N, Zhang J, Xu JR, Wang C (2019) Stage-specific functional relationships between Tub1 and Tub2 beta-tubulins in the wheat scab fungus Fusarium graminearum. Fungal Genet Biol 132:103251

    Article  CAS  PubMed  Google Scholar 

  • Ward TJ, Bielawski JP, Kistler HC, Sullivan E, O’Donnell K (2002) Ancestral polymorphism and adaptive evolution in the trichothecene mycotoxin gene cluster of phytopathogenic Fusarium. Proc Natl Acad Sci 99:9278–9283

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wehmeyer LE (1975) The pyrenomycetous fungi. Mycol Mem 6:1–250

    Google Scholar 

  • Wendt L, Sir EB, Kuhnert E, Heitkämper S, Lambert C, Hladki AI, Romero AI, Luangsa-ard JJ, Srikitikulchai P, Peršoh D, Stadler M (2018) Resurrection and emendation of the Hypoxylaceae, recognised from a multigene phylogeny of the Xylariales. Mycol Prog 17:115–154

    Article  Google Scholar 

  • Wenneker M, de Jong PF, Joosten NN, Goedhart PW, Thomma BP (2017) Development of a method for detection of latent European fruit tree canker (Neonectria ditissima) infections in apple and pear nurseries. Eur J Plant Pathol 148:631–635

    Article  Google Scholar 

  • Wijayawardene NN, Crous PW, Kirk PM, Hawksworth DL, Boonmee S, Braun U, Dai DQ, D’souza MJ, Diederich P, Dissanayake AJ, Doilom M, Hongsanan S, Jones EBG, Groenewald JZ, Jayawardena R, Lawrey JD, Liu JK, Lücking R, Madrid H, Manamgoda DS, Muggia L, Nelsen MP, Phookamsak R, Suetrong S, Tanaka K, Thambugala KM, Wanasinghe DN, Wikee S, Zhang Y, Aproot A, Ariyawansa HA, Bahkali AH, Bhat DJ, Gueidan C, Chomnunti P, De Hoog GS, Knudsen K, Li WJ, McKenzie EHC, Miller AN, Phillips AJL, Piątek M, Raja HA, Shivas RS, Slippers B, Taylor JE, Tian Q, Wang Y, Woudenberg JHC, Cai L, Jaklitsch WM, Hyde KD (2014) Naming and outline of Dothideomycetes—2014 including proposals for the protection or suppression of generic names. Fungal Divers 69:1–55

    Article  PubMed  PubMed Central  Google Scholar 

  • Wijayawardene NN, Hyde KD, Rajeshkumar KC, Hawksworth DL, Madrid H, Kirk PM, Braun U, Singh RV, Crous PW, Kukwa M, Lucking R, Kurtzman CP, Yurkov A, Haelewaters D, Aptroot A, Lumbsch HT, Timdal E, Ertz D, Etayo J, Phillips AJL, Groenewald JZ, Papizadeh M, Selbmann L, Dayarathne MC, Weerakoon G, Jones EBG, Suetrong S, Tian Q, Castaneda-Ruiz RF, Bahkali AH, Pang K-L, Tanaka K, Dai DQ, Sakayaroj J, Hujslova M, Lombard L, Shenoy BD, Suija A, Maharachchikumbura SSN, Thambugala KM, Wanasinghe DN, Sharma BO, Gaikwad S, Pandit G, Zucconi L, Onofri S, Egidi E, Raja HA, Kodsueb R, Cáceres MES, Pérez-Ortega S, Fiuza PO, Monteiro JS, Vasilyeva LN, Shivas RG, Prieto M, Wedin M, Olariaga I, Lateef AA, Agrawal Y, Fazeli SAS, Amoozegar MA, Zhao GZ, Pfliegler WP, Sharma G, Oset M, Abdel-Wahab MA, Takamatsu S, Bensch K, de Silva NI, De Kese A, Karunarathna A, Boonmee S, Pfister DH, Lu Y-Z, Luo Z-L, Boonyuen N, Daranagama DA, Senanayake IC, Jayasiri SC, Samarakoon MC, Zeng X-Y, Doilom M, Quijada L, Rampadarath S, Heredia G, Dissanayake AJ, Jayawardana RS, Perera RH, Tang LZ, Phukhamsakda C, Hernández-Restrepo M, Ma X, Tibpromma S, Gusmao LFP, Weerahewa D, Karunarathna SC (2017) Notes for genera-ascomycota. Fungal Divers 86:1–594

    Article  Google Scholar 

  • Wijayawardene NN, Hyde KD, Lumbsch HT, Liu JK, Maharachchikumbura SSN, Ekanayaka AH, Tian Q, Phookamsak R (2018) Outline of ascomycota: 2017. Fungal Divers 88:167–263

    Article  Google Scholar 

  • Wilcox WF, Gubler WD, Uyemoto JK (eds) (2015) Compendium of grape diseases, disorders, and pests 39–45. APS Press, The American Phytopathological Society, Paul, MN

    Google Scholar 

  • Williamson SM, Sutton TB (2000) Sooty blotch and flyspeck of apple: etiology, biology, and control. Plant Dis 84:714–724

    Article  PubMed  Google Scholar 

  • Wilson GW (1907) An historical review of the proposed genera of Phycomycetes. J Mycol 13:205–209

    Article  Google Scholar 

  • Wollenweber HW (1917) Fusaria autographice delineata. Ann Mycol 15:1–56

    Google Scholar 

  • Woudenberg JHC, Groenewald JZ, Binder M, Crous PW (2013) Alternaria redefined. Stud Mycol 75:171–212

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xu J, Ebada SS, Proksch P (2010) Pestalotiopsis a highly creative genus: chemistry and bioactivity of secondary metabolites. Fungal Divers 44:15–31

    Article  Google Scholar 

  • Xu J, Yang X, Lin Q (2014) Chemistry and biology of Pestalotiopsis -derived natural products. Fungal Divers 66:37–68

    Article  Google Scholar 

  • Yang T, Groenewald JZ, Cheewangkoon R, Jami F, Abdollahzadeh J, Lombard L, Crous PW (2017) Families, genera, and species of Botryosphaeriales. Fungal Biol 21:322–346

    Article  Google Scholar 

  • Yang XB, Navi SS (2005) First report of charcoal rot epidemics caused by Macrophomina phaseolina in soybean in Iowa. Plant dis 89:526–526

    Article  CAS  PubMed  Google Scholar 

  • Yang H, Hyde KD, Karunarathna SC, Deng C, Gu CH, Yang SA, Zhang ZC (2018) New species of Camptophora and Cyphellophora from China, and first report of sexual morphs for these genera. Phytotaxa 343:149–159

    Article  Google Scholar 

  • Yang Q, Fan ZL, Crous PW, Liang YM, Tian CM (2015) Cytospora from Ulmus pumila in Northern China. Mycol Progress 14:74

    Article  Google Scholar 

  • Zare R, Gams W (2001a) A revision of Verticillium section Prostrata. IV. The genera Lecanicillium and Simplicillium gen. nov. Nova Hedwig 73:1–50

    Google Scholar 

  • Zare R, Gams W (2001b) A revision of Verticillium section Prostrata. VI. The genus Haptocillium. Nova Hedwig 73:271–292

    Google Scholar 

  • Zare R, Gams W (2008) A revision of the Verticillium fungicola species complex and its affinity with the genus Lecanicillium. Mycol Res 112:811–824

    Article  CAS  PubMed  Google Scholar 

  • Zare R, Gams W (2016) More white verticillium-like anamorphs with erect conidiophores. Mycol Prog 15:993–1030

    Article  Google Scholar 

  • Zare R, Gams W, Schroers HJ (2004) The type species of Verticillium is not congeneric with the plant-pathogenic species placed in Verticillium and it is not the anamorph of ‘Nectria’ inventa. Mycol Res 108:576–582

    Article  PubMed  Google Scholar 

  • Zare R, Gams W, Starink-Willemse M, Summerbell RC (2007) Gibellulopsis, a suitable genus for Verticillium nigrescens, and Musicillium, a new genus for V. theobromae. Nova Hedwig 85:463–489

    Article  Google Scholar 

  • Zeng XY, Wu HX, Hongsanan S, Jeewon R, Wen TC, Maharachchikumbura SS, Chomnunti P, Hyde KD (2019) Taxonomy and the evolutionary history of Micropeltidaceae. Fungal Divers 97:393–436

    Article  Google Scholar 

  • Zhang W, Manawasinghe IS, Zhao W, Xu J, Brooks S, Zhao X, Xu JP, Brooks S, Zhao X, Hyde KD, Chethana KWT, Liu J, Li XH, Yan JY (2017) Multiple gene genealogy reveals high genetic diversity and evidence for multiple origins of Chinese Plasmopara viticola population. Sci Rep 7:17304

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Zhao P, Luo J, Zhuang W, Liu X, Wu B (2011) DNA barcoding of the fungal genus Neonectria and the discovery of two new species. Sci China Life Sci 54:664–674

    Article  CAS  PubMed  Google Scholar 

  • Zhuang JL, Zhu MQ, Zhang R, Yin H, Lei YP, Sun GY, Mark LG (2010) Phialophora sessilis, a species causing flyspeck signs on bamboo in China. Mycotaxon 113:405–413

    Article  Google Scholar 

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Acknowledgements

This work was funded by the grants of the project of National Natural Science Foundation of China (No. 31560489), Talent project of Guizhou science and technology cooperation platform ([2017]5788-5) and Guizhou science, technology department international cooperation base project ([2018]5806). Kevin D. Hyde would like to thank “the future of specialist fungi in a changing climate: baseline data for generalist and specialist fungi associated with ants, Rhododendron species and Dracaena species” (Grant No. DBG6080013), Thailand Research Fund (TRF) grant no RSA5980068 entitled Biodiversity, phylogeny and role of fungal endophytes on above parts of Rhizophora apiculata and Nypa fruticans and“Impact of climate change on fungal diversity and biogeography in the Greater Mekong Subregion” (RDG6130001). Rajesh Jeewon would like to thank Mae Fah Luang University and the University of Mauritius for research support. Alan J.L. Phillips acknowledges the support from Biosystems and Integrative Sciences Institute (BioISI, FCT/UID/ Multi/04046/2013).

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Jayawardena, R.S., Hyde, K.D., McKenzie, E.H.C. et al. One stop shop III: taxonomic update with molecular phylogeny for important phytopathogenic genera: 51–75 (2019). Fungal Diversity 98, 77–160 (2019). https://doi.org/10.1007/s13225-019-00433-6

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