Open Access
25 August 2022 Investigating accuracies of WorldView-2, Sentinel-2, and SPOT-6 in discriminating morphologically similar savanna woody plant species during a dry season
Emmanuel Fundisi, Solomon G. Tesfamichael, Fethi Ahmed
Author Affiliations +
Abstract

Accurate assessment of woody species diversity using remote sensing can assist ecologists by providing timely information for ecosystem management. The increasing availability of remotely sensed data necessitates the investigation of accuracies of different sensors in classifying plant species, especially during the dry season when foliage amount is low. WorldView-2, SPOT-6, and Sentinel-2 images were compared in detecting woody species (n = 27) and three coexisting land cover types in a savanna environment during a dry period. Random Forest (RF) and Support Vector Machine (SVM) classifiers were applied to each imagery to make a strong case for the comparison. The overall classification accuracies ranged between 52% and 65% for all images, with the WorldView-2 image performing the best followed by Sentinel-2 and SPOT-6 images. These accuracy rankings were similar for both the RF and SVM classifiers, with the former faring better. Pairwise comparison of the images using McNemar’s test showed significant differences between images in their ability to correctly identify woody species. Analysis of band importance revealed better contributions to the classifications of infrared bands for all images. Overall, the findings showed the potential of optical imagery in classifying and monitoring woody species hotspots in savanna environments even during a low photosynthesis season.

1.

Introduction

Savannas occupy 20% of the entire Earth’s surface, with 50% coverage of the African continent and 46% within the Southern Africa region.1 Savannas also offer vital services to humans and the environment, such as the provision of grazing and browsing lands for livestock,2,3 serving as a source of food and energy to humans,4 and providing a natural habitat for wildlife.57 Nonetheless, climate change and anthropogenic activities are threatening the savanna ecosystem through changes in weather patterns.8 Furthermore, an uncontrolled increase in woody plants (woody encroachment) at the expense of other herbaceous plant species is also contributing to the imbalance of the savanna ecosystem.9,10 Therefore, it is important to monitor savanna ecosystems in real time to manage these ecosystems efficiently.11 Traditional approaches of quantifying woody plants through field surveys are expensive and can be subjective to the enumerator’s interpretations, marred with unreliability and precision concerns.12,13

Remote sensing techniques are used as an alternative to field enumeration because they provide a reliable and efficient characterization of woody plant species. Several studies have exploited multispectral remote sensing to differentiate woody and nonwoody vegetation forms in both managed (e.g., Refs. 14 to 17) and natural forests (e.g., Refs. 10 and 18) at relatively high accuracy levels due to significant differences in the structural and chemical composition of the two plant forms. Such capability has been extended to identify a specific species from an ensemble of plant species in the savanna environments (e.g., Refs. 19 to 23). Focusing on a targeted species is important to manage, for example, invasive species and endangered plants.19,20,22,24 However, from a remote sensing viewpoint, the identification of a single species remains fairly simple due to the homogeneity of chemical properties in the species of interest compared with cohabiting species.25

Monitoring multiple species types is essential for biodiversity assessment aimed toward maintaining ecological services and ecosystem functioning.12,26 Multispectral images have been applied to differentiate multiple species types in the mangrove,27 subtropics,28 temperate regions,29 boreal forest,30 and tropical rainforest31 with high accuracies achieved in most cases (>75%). Similar applications have been conducted in heterogeneous savanna environments (e.g., Refs. 10, 20, and 32). Reference 33 classified multiple species (n=40) using both nonpansharpened and pansharpened Quickbird multispectral image. The authors evaluated classification performance using the overall kappa coefficient and recorded accuracies ranging between 0.48 and 0.99. Reference 34 compared the efficacy of SPOT-5 and Landsat-5 to discriminate multiple species (n=22) and reported rather low accuracies (<53%) for both images. A common cause of inaccuracy in the classification of vegetation is a mixed pixel phenomenon due to mismatch between the scale of imagery and the variability in target species.35,36 Accordingly, the images with low spatial and spectral resolutions relative to high-species diversity conditions lead to a misrepresentation of the plant variability that potentially exists in a localized environment. Therefore, it is important to find the balance between the scale of remotely sensed data and the size of individual plant species by comparing images with different spatial and spectral characteristics to enable accurate mapping of plant species in such environments.

Furthermore, the majority of savanna plant species classifications have been conducted in wet periods when most plants are photosynthetically active (e.g., Refs. 20, 37, and 38). Prominent differences in the chemical and structural composition of plant leaves during these periods induce distinguishable spectral signatures allowing for effective discrimination among plant species types.39 Weather variations between wet and dry periods alter vegetation leaf development and senescence, with dry season exhibiting low foliage that may suppress the distinguishing traits among plants.40 However, ecological monitoring requires knowledge about vegetation in dry season for a successful assessment throughout the year. Clear skies in dry seasons provide the ideal scenario for high-quality optical remotely sensed data that can be used for vegetation characterization. This has been demonstrated in a number of studies.38,4143 One notable example by Ref. 44 compared multiple images (Landsat and SPOT-5, moderate resolution imaging spectroradiometer, and GeoEye-1) in the savanna environment. However, that study focused on fractional cover estimation (quantifying the proportion of photosynthetically active and nonactive vegetation), rather than plant species classification. There is a need to compare multiple remotely sensed data to classify morphologically similar woody plant species in dry seasons.

Therefore, this study aimed to investigate the performances of WorldView-2, SPOT-6, and Sentinel-2A images in detecting several woody plant species (n=27) and coexisting land cover types (bareland, grassland, and shrubs) in a savanna environment during a dry season. These images have different spatial and spectral characteristics and therefore could provide an insight into the optimal data characteristics needed for monitoring woody species diversity in savanna environments. The study used an area with relatively high species diversity consisting of a mix of young and mature narrow-leaved woody plant species.

2.

Methods

2.1.

Study Area

The Klipriviersberg Nature Reserve (KNR) located in Johannesburg, South Africa, was used for the study (Fig. 1). The reserve was declared a nature conservation area in 1984 and covers 651  ha. In general, the vegetation types in the reserve include Andesite Mountain Bushveld and Clay Grassland, which are associated with a savanna environment.45 The altitude of the area ranges between 1540 m in the south and 1790 m in the north, with a mean altitude of 1653 m. The mean annual rainfall around KNR ranges from 624 to 802 mm promoting foliage and canopy cover in wet periods. The wet season, which is largely associated with photosynthetically active plants, runs from November to March and the dry season associated with low foliage occurs between May and October. The mean annual temperature ranges between 17°C and 26°C in summer and 5°C and 7°C in winter.46 The geology types found in the area, which lead to the floristic structure of the reserve, include quartzites, conglomerates, and dolomites.47

Fig. 1

Klipriviersberg Nature Reserve and the distribution of sampling plots used in the study. The background image was derived from a WorldView-2 image in false color composite (red, band 6; blue, band 4; green, band 5).

JARS_16_3_034524_f001.png

2.2.

Field Data

In this study, 240 points distributed at 170  m intervals in the north–south and east–west directions were generated in ArcGIS (ESRI® ArcGIS 10.6, Redlands, California). The point coverage was exported into a global positioning system (Garmin, GPSMAP® 64, Kansas) and located in the field. Field surveys were conducted from May to June, 2017, representing the dry period in the study area.46 A buffer with a 20-m radius was created around each point, making a plot; this size was specified to accommodate multiple pixels of the images used in the study (WorldView-2, SPOT-6, and Sentinel-2A). Circular plots were preferred over rectangular plots as they require only a single control point at the plot center.48 Furthermore, circular plots were favored instead of angular shapes, since circular canopy shapes are more commonly witnessed in a natural vegetation environment. In each plot, plant species with height 2  m and land covers were recorded, with the record showing a minimum of one and a maximum of nine different species per plot. Overall, a total of 27 different species and three land cover types (grassland, bareland, and shrubs) were recorded in all plots. Additional structural attributes, such as species canopy size and species richness, were recorded in each plot. These attributes were used to confirm the assignment of a pixel to a class in an instance of mixed-pixel phenomenon. Accordingly, a pixel was allocated to species that had the dominant canopy size falling within that pixel. In the case of multiple plants with relatively small canopy sizes, the species with the most occurrence determined the classification of that pixel.

2.3.

Remote Sensing Data and Preprocessing

WorldView-2, SPOT-6, and Sentinel-2A were acquired on May 17, June 5, and June 10, respectively, coinciding with the time of the field surveys. WorldView-2 image (DigitalGlobe)49 has eight multispectral bands in the 0.40 to 1.04  μm region and a panchromatic band in the 0.45 to 0.80  μm (Fig. 2) measured at 1.8 and 0.46 m spatial resolutions, respectively. SPOT-6 image was sourced from the South African National Space Agency (SANSA). The imagery has four multispectral bands in the 0.45 to 0.89  μm and a panchromatic band in the 0.45 to 0.75  μm (Fig. 2) measured at 6 and 1.5 m spatial resolutions, respectively. Sentinel-2A image was downloaded from the European Space Agency Data Hub.50 Sentinel-2 has 13 multispectral bands (Fig. 2) with four bands (0.49 to 0.84  μm) measured at 10 m spatial resolution and six bands measured at 20 m spatial resolutions. Prior to classification, the three images underwent atmospheric correction to ensure high signal-to-noise ratio. A comparison of atmospheric correction methods between dark object subtraction (DOS)51 and fast line-of-sight atmospheric analysis of hypercubes52 showed strong similarities between the two approaches (Pearson’s correlation, r=0.95). Therefore, we applied DOS to all individual bands of each imagery in ENVI 5.3 (©2015 Exelis Visual Information Solution Inc., Boulder, Colorado). Coastal bands were excluded due to the relative sensitivity of those bands to atmospheric interferences.53 The remaining bands (7 for WorldView-2, 4 for SPOT-6, and 10 for Sentinel-2A, Table 1) were subsequently pansharpened. Notably this study utilized the Gram–Schmidt algorithm54 which maximizes image sharpness and minimizes color distortions.

Fig. 2

Spectral profiles extracted from satellite images used in the study.

JARS_16_3_034524_f002.png

Table 1

Comparison of spectral and spatial profiles of satellite images used in the study.

Worldview-2Sentinel-2ASPOT-6
Band nameWavelength range (center wavelength) μmSpatial resolution (m)Band nameWavelength range (center wavelength) μmSpatial resolution (m)Band nameWavelength range (center wavelength) μmSpatial resolution (m)
Panchromatic0.45 to 0.80 (0.47)0.5Panchromatic0.45 to 0.52 (0.47)1.5
Blue0.45 to 0.51 (0.48)2Blue0.45 to 0.52 (0.49)10Blue0.45 to 0.52 (0.48)6
Green0.51 to 0.58 (0.55)2Green0.54 to 0.57 (0.56)10Green0.53 to 0.59 (0.56)6
Yellow0.58 to 0.62 (0.61)2Red0.65 to 0.68 (0.66)10Red0.62 to 0.69 (0.71)6
Red0.63 to 0.69 (0.66)2Red edge 10.69 to 0.71 (0.70)20NIR0.76 to 0.89 (0.80)6
Red edge0.70 to 0.74 (0.72)2Red edge 20.73 to 0.74 (0.74)20
NIR-10.77 to 0.89 (0.83)2Red edge 30.77 to 0.79 (0.78)20
NIR-20.86 to 1.04 (0.95)2NIR0.78 to 0.90 (0.84)10
Narrow NIR0.85 to 0.87 (0.86)20
Shortwave infrared-11.56 to 1.65 (1.61)20
Shortwave infrared-22.10 to 2.28 (2.20)20

2.4.

Training and Classification of Remotely Sensed Data

Training of 27 unique woody plant species as well as grassland, shrubs, and bareland classes was performed on the three satellite images (WorldView-2, SPOT-6, and Sentinel-2A) separately. It should be noted that as the spatial resolution becomes coarser, individual pixels are less likely to capture small features resulting in mixed pixel phenomenon.39,55,56 This study adopted the nearest-neighbor resampling technique on SPOT-6 and Sentinel-2A to resample the pixels to the size of the WorldView-2 image (0.5 m). Nearest-neighbor resampling technique was chosen because it does not alter values in the output raster data set and therefore appropriate for categorical data classification.57 Resampling to 0.5 m ensured exact subdivision of Sentinel-2A and SPOT-6 images avoiding the mixing of information between neighboring pixels of the original resolutions. By superimposing the three images, it was also confirmed that the offset in the pixel locations never exceeded 0.03 m avoiding the spill effect of information into neighboring pixels. Similar sampling points were used for the three images to ensure direct comparability between results. A total of 8011 points representing 27 woody plant species, grassland, shrubs, and bareland were digitized inside the 240 plots on the three satellite images separately. Digitizing of points was guided by field surveys in which a local Cartesian coordinate system was used to locate the species. Finally, points were split into two portions of which 30% (n=2408) were allocated to training–classification and 70% (n=5603) to evaluate the accuracy of the classification. The spatial distribution of the training samples was taken into consideration when selecting the training samples. The species along with the proportions allocated to the training and testing of the classifications are given in Table 2.

Table 2

Illustration of the number of woody plant species used for training and evaluation of classification.

Species nameCodeLeaf structureTrainingValidation
Acacia caffraACNarrow-leaved265637
Acacia delabataADNarrow-leaved48208
Acacia karroAKNarrow-leaved177252
Afrocanthium mundianumAMNarrow-leaved120160
Brachylaena rotundataBRNarrow-leaved104172
Celtis africanaCAfNarrow-leaved62139
Celtis australisCAuNarrow-leaved62124
Cordyline australisCANarrow-leaved135262
Dispyros natalensisDNBroad-leaved50284
Dombeya rotundifoliaDRBroad-leaved72168
Ehretia rigidaERNarrow-leaved103207
Euclea crispaECNarrow-leaved75138
Gymnosporia buxifoliaGBNarrow-leaved45240
Heteromorpha arborescensHANarrow-leaved38155
Kiggelaria africanaKANarrow-leaved88176
Melia azedarachMANarrow-leaved79105
Olea europaea subs.africanaOEaNarrow-leaved66175
Pittosporum viridiflorumPVNarrow-leaved62152
Populus x canescensPCBroad-leaved36147
Rhus lenciaRLNarrow-leaved59141
Salix mucronataSMNarrow-leaved104151
Sambucus nigraSNNarrow-leaved48168
Searsia leptodictyaSLNarrow-leaved77126
Searsia pyroidesSPNarrow-leaved67157
Tarcchonanthus camphoratusTCNarrow-leaved71105
Zanthoxylum capenseZCNarrow-leaved45114
Ziziphus mucronataZMBroad-leaved70184
BarelandBLNo leaf54279
GrasslandGLNo leaf73133
ShrubsSHMixed53144
Total24085603

Two machine learning classification algorithms utilized in this study are Random Forest (RF) and Support Vector Machine (SVM). These classification algorithms were implemented using the Caret package58 for R language.59 The RF classifier is an ensemble machine learning approach, which utilizes bootstrap sampling to build multiple decision tree models.60 The RF method was selected for this study due to the following reasons: (i) it can analyze large datasets, (ii) it is free from normal distribution assumptions, and (iii) it is powerful when dealing with outliers in the dataset.61 Internally, the RF uses two-thirds of the data (in-bag) for training the classification model and the remaining one-third, which is referred to as out-of-bag data, to evaluate the accuracy of the trained model.61 RF classifier utilizes ntrees (number of classifications trees) and mtry (a number of predicting variables) to generate a prediction model.60 In this study, a 10-fold cross-validation analysis which was repeated 10 times was used to determine the optimal parameters. The explanatory power of the input variables (multispectral bands) was quantified to rank the importance of each band for the classification accuracy.

The SVM approach classifies features (reflectance of different bands) by identifying optimal decision (separation) boundary that maximizes the margin between two classes.62 The SVM, such as the RF, does not require the data to have a normal distribution,63 and it performs well when using high dimensional and complex data. This study used a nonlinear SVM technique, i.e., radial basis function kernel that accommodates linear and nonlinear relationships between a response and a predictor62 customized for R.64 The SVM classifier requires the specification of two parameters to balance the accuracy and reliability of the classification.63 These parameters include cost factor (C) and gamma (γ). The C factor relates to the penalty (cost) of misclassification error, and γ determines the influence of a training sample to capture the complexity in the data.62 C and γ were also determined by running 10-fold cross-validation which was repeated 10 times similar to the approach applied for selecting optimal parameters of the RF. Training and classification of the images were performed on 30% (n=2408) of the data using each satellite image.

2.5.

Accuracy Assessment

Classification results derived from the remotely sensed data (WorldView-2, SPOT-6, and Senetinel-2A) were assessed on 70% (n=5603) of the data. Although the RF has an internal evaluation system, we believe that the use of such a large independent sample dataset provides a more convincing evaluation of the classification. An error matrix was used in the study that uses overall accuracy, producer’s accuracy, and user’s accuracies statistics.65 The user’s accuracy indicates the probability that classified woody species and land cover types on the map represent the same category on the ground. This accuracy is thus calculated as the number of true observations of a class divided by the number of predicted observations. The producer’s accuracy indicates the probability of a reference class being classified correctly, and it is calculated as the number of true observations of a class divided by the number of true reference observations of that class. Kappa coefficient statistic [Eq. (1)] was applied to evaluate the quality of classified imagery.66 The kappa statistic is used to control the cases which might have been correctly classified by chance:

Eq. (1)

Kappa coefficient=PobservedPchance1Pchance,
where Pobserved is the observed proportion of agreement and Pchance is the proportion expected by chance.

McNemar’s test, which is a nonparametric and standardized normal test based on confusion matrices in a 2×2 dimension,67 was also applied in this study. The McNemar’s test computed using Eq. (2) determines the binary distinction between correct and incorrect class designation by different images (Worldview-2, SPOT-6, and Sentinel-2A) using RF and SVM classifiers:

Eq. (2)

Z=122112+21,
where the square of z follows a chi-square χ2 distribution with 1 degree of freedom. 12 represents the misclassified number of samples by RF classifier using WorldView-2 but classified correctly by the same classifier using SPOT-6. 21 represents the total number of samples classified correctly by RF using WorldViw-2 but not classified correctly by RF classifier using SPOT-6. This approach of pairwise comparison was applied to other images using SVM as well.

3.

Results

3.1.

Classification Accuracies Derived from WorldView-2, SPOT-6, and Sentinel-2A

Figure 3 shows visual comparisons of woody species and coexisting land cover types using Worldview-2, SPOT-6, and Sentinel-2A images classified using RF and SVM classifiers. Overall classification accuracies of species and coexisting land covers derived from the three images showed the best overall accuracy of 65% for WorldView-2 image, followed by Sentinel-2A and then SPOT-6 using the RF classification (Fig. 4). Similarly, the SVM returned classification accuracies derived from the three images in the same ranking order as the RF, although the SVM had a lower accuracy for each image. Kappa coefficient statistics derived from the same three images showed that WorldView-2 had the highest kappa coefficient value of 0.63 followed by Sentinel-2A and then SPOT-6 using the RF classifier (Fig. 4). The kappa values of the three images using the SVM classifier had the same ranking order as the RF classifier (Fig. 4).

Fig. 3

Visual illustration on the performances of RF classification using (a) WorldView-2, (b) SPOT-6, and (c) Sentinel-2A; SVM classification using (d) WorldView-2, (e) SPOT-6, and (f) Sentinel-2A images in classifying woody plant species and coexisting land cover types.

JARS_16_3_034524_f003.png

Fig. 4

Overall accuracies and kappa coefficient statistics for WorldView-2, Sentinel-2A, and SPOT-6 using RF and SVM classifiers.

JARS_16_3_034524_f004.png

Results from the McNemar’s test revealed statistically significant difference between the accuracies of WorldView-2 (χ2=9.15; p=0.002) and SPOT-6 (χ2=6.34; p=0.007) when RF classification was used. The difference between Sentinel-2A (χ2=4.48; p=0.023) and WorldView-2 images (χ2=5.36; p=0.034) also were significant using the RF classifier. Such statistically significant difference was also observed between Sentinel-2A (χ2=4.75; p=0.042) and SPOT-6 (χ2=4.97; p=0.048). The SVM-based classification resulted in statistically significant difference between the accuracies of WorldView-2 (χ2=7.15; p=0.03) and SPOT-6 (χ2=8.34; p=0.04). Similarly, the differences between Sentinel-2A (χ2=4.48; p=0.023) and WorldView-2 images (χ2=5.36; p=0.034) were statistically significant using the SVM classifier. However, the differences between Sentinel-2A (χ2=0.75; p=0.142) and SPOT-6 (χ2=1.97; p=0.248) were statistically not significant using SVM.

Producer’s and user’s accuracies of individual plant species are shown in Fig. 5. The producer’s accuracies ranged between 27% (Cordyline australis) and 83% (grassland) for different species across the three images when using the RF classifier [Fig. 5(a)]. When using WorldView-2 image and RF, 20 species and coexisting land covers had producer’s accuracy exceeding 60% with 10 of them having 70% or higher accuracies. Sentinel-2A and RF combination yielded producer’s accuracies of >60% for 15 species and coexisting land covers, while the accuracy exceeded 70% for seven species. Significantly, fewer species and coexisting land covers had good accuracies when SPOT-6 was used with only four species having >60% accuracies. The SVM classifier yielded producer’s accuracies varying between 14% (Heteromorpha arborescens) and 94% (Melia azedarach) across the three images [Fig. 5(b)]. Specifically, WorldView-2 image returned producer’s accuracies exceeding 60% for 16 species and exceeding 70% for seven species. The combination of Sentinel-2A and SVM resulted in quite low producer’s accuracy with only eight species estimated at >60% accuracy while only two species scoring >70%. SPOT-6 and SVM combination fared better than SPOT-6 and RF combination but only marginally with six and three species having >60% and 70% accuracies, respectively. The user’s accuracies ranged between 31% (grassland) and 95% (Acacia caffra) across the three images using RF [Fig. 5(c)] and from 11% (H. arborescens) to 92% (A. caffra) using SVM classifier [Fig. 5(d)]. Seventeen species and coexisting land covers had user’s accuracy >60% and seven of those with >70% using WorldView-2 and RF combination [Fig. 5(c)]. For Sentinel-2A and RF combination, 13 species had user’s accuracies exceeding 60% with five of those species having >70% accuracies. Using the SVM classifier, the numbers of species identified at accuracies >60% were significantly lower for the three images than what were obtained using the RF classifier; with the lowest performance observed for Sentinel-2A image (Fig. 5).

Fig. 5

Accuracies of identifying individual species using WorldView-2, Sentinel-2A, and SPOT-6; (a) RF producer’s accuracy, (b) SVM producer’s accuracy, (c) RF user’s accuracy, and (d) SVM user’s accuracy. Species names represented by the two-or three-letter codes are given in Table 2.

JARS_16_3_034524_f005.png

Using the producer’s accuracy, which evaluates classification quality against the reference (truth), we can compare the relative performance of each image against the other two in identifying species (Fig. 6). The WorldView-2 was better than Sentinel-2A for 16 species and coexisting land covers [Fig. 6(a)] with the relative improvement in producer’s accuracy ranging between 1% and 38% for RF and 1% and 60% for SVM. The improvements exceeded 10% for 13 species using both classifiers. WorldView-2’s improvement over SPOT-6 was even more for 26 and 21 species and coexisting land covers using RF and SVM, respectively [Fig. 6b], with the improvement exceeding 10% for 15 or 14 species and coexisting land covers for the two classifiers. Notably, Sentinel-2A performed better than WorldView-2 for 13 (RF) and 11 (SVM) species with the improvement exceeding 10% for six species [Fig. 6(c)]. Sentinel-2A’s better performance over SPOT-6 was observed for 18 and 14 species using the RF and SVM classifiers, respectively [Fig. 6(d)]. The relative performance of SPOT-6 over WorldView-2 was noted to be better in four or nine species depending on the classifier [Fig. 6(e)]. SPOT-6 was advantageous over Sentinel-2A for 12 or more species and coexisting land covers; this was the case more using the SVM than the RF classifier [Fig. 6(f)].

Fig. 6

Relative producer’s accuracy of an image over the other images in identifying species types. Worldview-2 (WV), SPOT, and Sentinel-2A multispectral image (S-MSI) in the y axis represent satellite images. Species names represented by the two-or three-letter codes are given in Table 2.

JARS_16_3_034524_f006.png

3.2.

Comparison of Images Based on Confusions

It is useful to evaluate the level of confusion of a species against other species in a localized area with a diverse vegetation composition. Logically, the image that yields the smallest amount of confusion among coexisting species is considered desirable. Detailed confusion matrices using RF and SVM classification types are given in Table 3 in the Appendix A. Figure 7 provides the count of other species and coexisting land covers against which a species is confused. The RF classification clearly showed that the WorldView-2 identified nearly each of the species with the least number of confusions with other species. Using this image, a species is confused on average with 11 other species or land cover types, while 12 species were confused with <10 species and coexisting land covers [Fig. 7(a)]. In contrast, Sentinel-2A confused a species with an average of 18 species and coexisting land covers [Fig. 7(a)]. Despite an overall weaker performance of Sentinel-2A, it had comparable confusion level with WorldView-2 for certain species (e.g., Acacia karro and Dispyros natalensis) and fared better than WorldView-2 for three species (Afrocanthium mundianum, C. australis, and Zanthoxylum capense). SPOT-6 created considerable confusion in identifying each species at an average of 24 species and coexisting land covers confused with each species. The classification using SVM reduced the discrepancy among the three images, compared with the RF classifier [Fig. 7(b)]. In particular, the average number of species and coexisting land covers confused with any species was equal for WorldView-2 and Sentinel-2A at 16 while SPOT-6 confused a species with an average number of 21 species, which is an improvement from 24 species and coexisting land covers using the RF classifier. Notably, Sentinel-2A had a lower confusion rate than WorldView-2 for 16 species [Fig. 7(b)]—an improvement from only three species using the RF classifier [Fig. 7(a)].

Fig. 7

Number of species confused against a given species for (a) RF and (b) SVM classifiers.

JARS_16_3_034524_f007.png

While the above comparison focused on confusion based on the number of different species, it is important to compare images using the number of samples of each species that contributed significantly to inaccuracies. We illustrate this using a select species for both RF and SVM classifiers, and exhaustive confusions are given in Table 4 in the Appendix B. To balance the comparison across accuracies, we selected species from three producer’s accuracy categories including <60%, 60% to 70%, and >75%. Since the intention was to compare images, the selected species in each category needed to satisfy the criterion using at least two images. The selection was made based on the results presented in Figs. 8(a) and 8(b), for the RF- and SVM-based producer’s accuracies, respectively. Figure 8 illustrates three selected species including A. caffra (<60%), A. karoo (60% to 70%), and Dombeya rotundifolia (60% to 70%), and how their accuracies were affected largely by few species. Notable similarities were observed in terms of species type that contributed to inaccuracies of identifying each species; for instance, A. caffra was confused mainly with A. karro, Afrocanthium mundianum, C. australis, and grassland when using RF [Fig. 8(a)] and SVM [Fig. 8(b)]. It is also noteworthy to mention the agreement between the two classifiers in identifying the images with comparable confusions. For example, confusion of A. caffra with A. karro and A. mundianum was noted when Sentinel-2A and SPOT-6 were used exploiting RF and SVM classifiers. Although comparable images did not match consistently, certain similar observations can be seen in the identification of species. This can be noted for A. karoo whose inaccuracy was compromised by A. caffra, Celtis australis, and Ehretia rigida for both classifiers [Figs. 8(c) and 8(d)] while D. rotundifolia was confused mainly with A. caffra and Ehretia rigida for both classifiers [Figs. 8(e) and 8(f)].

Fig. 8

Comparison of images based on number of samples contributing to confusions of three selected species: (a), (b) A. caffra, (c), (d) A. karro, and (e), (f) D. rotundifolia and using the RF and SVM classifiers.

JARS_16_3_034524_f008.png

3.3.

Band Importance of WorldView-2, SPOT-6, and Sentinel-2A Images

Variable importance, which measures the percentage that the prediction error increases when a predictor variable is removed, was computed for each image using both classifiers in an attempt to see the general trend in the contribution of individual bands [Figs. 9(a)9(c)]. In general, there was a strong similarity among the three images in terms of the important regions of the electromagnetic spectrum for RF and SVM classifiers. Infrared range bands had the most contributions to the classifications for the three images (>50%) using both RF and SVM classifiers. For example, the near-infrared (NIR) band alone contributed to 65% or greater accuracy in all the images [Figs. 9(a)9(c)]. There were also similarities among the three images in the contributions made by the blue and green bands each of which contributed to <40% accuracy. Further similarities can be noted between WorldView-2 and Sentinel-2A that have more spectral bands in the infrared wavelength regions. For example, each of NIR2 and red edge bands of WorldView-2 and VRE and SWIR bands of Sentinel-2A contributed >65% of the classifications. The SWIR1 and SWR2 available only in Sentinel-2A also made significant contributions to the classifications using both classifiers [Fig. 9(b)].

Fig. 9

The relative importance of the multispectral bands in classifying woody plant species using RF and SVM derived from (a) WorldView-2, (b) Sentinel-2A, and (c) SPOT-6 images; NIR, near-infrared; VRE, vegetation red edge; and SWIR, shortwave infrared band.

JARS_16_3_034524_f009.png

4.

Discussion

4.1.

Performances of WorldView-2, SPOT-6, and Sentinel-2A

Numerous studies have applied remotely sensed data with relatively low spectral and spatial characteristics failed to capture the true extent of localized plant species diversity.34,41,68 Therefore, this study utilized WorldView-2, SPOT-6, and Sentinel-2A satellite images with improved spatial or spectral characteristics to capture several woody plant species and generic land cover types (n=30) in a localized savanna environment during a dry season. WorldView-2 image yielded the highest overall classification accuracy (65%) using the RF classifier compared to other images (Fig. 4). One advantage of WorldView-2 data is the availability of a significant number of spectral bands present within a narrow spectral range.69 Such property allows for improved discrimination of subtle differences among species in dry periods associated with low foliage, which may obscure characteristic differences between species.40 The combination of improved spatial and spectral characteristics offered by WorldView-2 image reduces the mixed pixel problem inherent in coarser spatial resolution and low spectral resolution images.53,55 Variability in overall classification results of the three images might also have been influenced by different acquisition times of the three images. Although the images were all collected in dry period, even minor variations in weather conditions on different dates and times can result in variability of reflected radiation captured by the satellite images70 thus contributing to a level of confusion in species identification.

Sentinel-2A image returned the second-best accuracy of discriminating the woody plant species and coexisting land covers in this study (overall accuracy = 59%). This accuracy is encouraging, given the relatively coarse spatial resolution of Sentinel-2A (10  m) compared with WorldView-2 (65%) and considering the large number of species targeted in the study. Our study moderately agrees with Ref. 71 which used Sentinel-2A image to map 24 woody plant species and reported accuracies >65%. A key advantage of Sentinel-2 over WorldView-2 is that it has spectral bands in the SWIR region of the electromagnetic spectrum. Therefore, this advantage has compensated for the loss in the spatial resolution of the image. SPOT-6 imagery achieved the lowest accuracy (52%) of the three images used in the study. Although SPOT-6 imagery has relatively better spatial information compared with Sentinel-2A, it lacks detailed spectral bands particularly in the infrared regions that are suitable for differentiating plant species.72 A similar inferior performance of SPOT image was reported by Ref. 34, which compared the accuracies of Landsat (50%) and SPOT-5 (30%) in the classification of plants in a savanna region in Australia. The producer’s and user’s accuracies generally corresponded with the overall accuracies in showing the superiority of WorldView-2 image over the others (Fig. 5). It is important to note that the above observations were somewhat similar for the RF and SVM classifiers, indicating the reliability of the findings in ranking the three images irrespective of a classification approach.

A comparison among the performance of the three images using relative improvement of producer’s accuracies clearly showed the superiority of WorldView-2 image followed by Sentinel-2A and SPOT-6 as shown in Fig. 6. Specifically, the improvement of WorldView-2 over the other images in terms of producer’s accuracy was evident for many species and coexisting land covers. The advantage of WorldView-2 over Sentinel-2A was also reported by Ref. 73, which estimated deciduous small spiral thin leaf oak plants (n=13). It is noteworthy to mention the preference of Sentinel-2A over WorldView-2 for many species; this could be attributed to the image’s spectral superiority. The vegetation type in the study area is dominated by narrow-leaved plant species (Table 2) and limited chlorophyll content due to the dry season conditions under which the data were collected. The combination of these factors necessitates the use of imagery that has multiple and narrow bands such as those found in Sentinel-2A.32 The advantage of WorldView-2 over SPOT-6 agrees with Ref. 74 which reported better performance of WorldView-2 compared with SPOT-5 image in classifying plant species in a savanna vegetation environment, although they targeted fewer species (n=5). Comparatively, SPOT-6 performed better than the other images for quite a few species [Figs. 6(e) and 6(f)], understandably due to the lower spectral qualities it possesses compared with the other images.

4.2.

Confusion Levels of Images

In most cases, the classification using WorldView-2 (as opposed to the other images) resulted in each species confused with the least number of different species particularly when the RF classifier was used [Fig. 6(a)]. The weakness of Sentinel-2A in this regard can be attributed to the physiological characteristics of the vegetation in the study area of which >90% of species type are narrow-leaved plants such as H. arborescens, A. karro, C. australis, etc. Narrow-leaved plant species are difficult to discriminate using images with coarse spatial resolution images34,71 such as the Sentinel-2A (10 to 60 m, spatial resolution) used in this study. Although SPOT-6 has a relatively high spatial resolution, it still resulted in confusion among several species as well as coexisting land cover types. It is important to note that deciduous species identified in the study area lose their leaves during the winter period when the data for this study were collected.45 The limited spectral capability offered by SPOT-6 is unlikely to differentiate species accurately. Although SPOT-6 imagery has better spatial information than Sentinel-2A, the results show that spatial information alone is insufficient to discriminate woody plant species accurately.

It is worth noting that the SVM classifier applied to Sentinel-2A resulted in lower misclassification of each species with other species when compared with the RF classifier. In fact, the improvement in general showed similarity of the image with WorldView-2. This can be attributed to the spectral advantages of Sentinel-2A which divides the red-edge region into four bands.75 The performance of Sentinel-2A comparable to WorldView-2’s is encouraging since the former is widely and publicly available at no cost.

In identifying a species in a highly diverse savanna ecosystem, it is critical to pinpoint species that have major contributions to misclassifications of a target species. The findings of this study showed that few species created most of the confusions in the classification of the 27 woody plant species, and these confusions are evidenced by at least two of the three images (Fig. 8). Such confusions can be attributed to the similarity in foliage (leaf) characteristics of the species inducing somewhat similar spectral responses captured by the three sensors in the study.73 This suggests, among others, the need for advanced remote sensing systems with spectral and spatial characteristics better than those used in this study.

4.3.

Comparison of Images Based on Band Importance

Comparison of variable importance findings showed that the highest contributions from all the three images in the analysis (WorldView-2, SPOT-6, and Sentinel-2A) and classifiers (RF and SVM) were made by the infrared bands (Fig. 9). This finding is in agreement with Refs. 76 to 79 who discriminated narrow-leaved plant species in a savanna environment. The yellow band of WorldView-2 image performed also performed well comparatively to infrared bands. This is expected since the band is useful in detecting woody plant species with gray to yellow coloring often present during dry periods in savanna environments.68 The significant contribution of the red-edge band available in WorldView-2 and Sentinel-2A is related to the sensitivity of the band to chlorophyll variations of even small narrow-leaved plants.80 The availability and significant contributions of vegetation red edge bands in Sentinel-2A clearly places it at advantage over Landsat imagery, which largely shares similar spatial and spectral characteristics with Sentinel-2A.

5.

Conclusions

This study compared WorldView-2, Sentinel-2A, and SPOT-6 images to detect several woody plant species in a savanna environment during a dry season. The image with the best spatial and spectral characteristics (WorldView-2) performed better compared with Sentinel-2A and SPOT-6 images. The findings highlighted the effectiveness of multispectral images in detecting woody plant species with similar foliage (or leaf) characteristics, although the level of greenness desired in vegetation characterization using remote sensing was generally low. A comparative look at the three images showed WorldView-2 to be the best followed closely by Sentinel-2A, which is available publicly at no cost. The comparability between the two images can be attributed to the higher spatial resolution offered by WorldView-2 and better spectral qualities of Sentinel-2A. The superiority in spectral qualities of Sentinel-2A resulted in the classification accuracies that were better than those obtained using SPOT-6 which has a better spatial resolution but significantly lower spectral qualities devoid of details in infrared regions of the electromagnetic spectrum. While the results of this study are quite promising, it is important to acknowledge the need for improved spatial and spectral resolutions to inform efficient species diversity monitoring strategies.

6.

Appendix A: Classifier error matrix of WorldView-2, Sentinel-2A, and SPOT-6 images using the RF classifier

Error matrix provides detailed description of the confusion in species classification using WorldView-2, Sentinel-2A, and SPOT-6 images and RF classifier (Table 3).

Table 3.

Error matrix of three images using Random Forest.

REFRF
PREDACADAKAMBLBRCAfCAuCADNDRECERGBGLHAKAZCMAOeaPCPVRLSHSLSMSNSPTCZCZM
WVAC5244110120500000100011000000000001
Sentinel410716815404865251000300101194461015964
SPOT501910420151212132469111611413510817145161011121371016
WVAD4110950430500000000540012000000004
Sentinel1514323041328411024120021213213002421020
SPOT41461491110218734311025414121015640154
WVAK0816030511353402000046010800130001
Sentinel911431700502006304600100001013013
SPOT15513256377374031004353580017423171
WVAM0135120032183020003012000151300220003
Sentinel30121222101087201110726725330497315
SPOT7431062100260215002011001021203319
WVBL10000171400000000210050000050010350
Sentinel1407115111002062102813000052028261280
SPOT010621007435123510279351131356357360
WVBR311061120314000000000134300409001299
Sentinel4000112820020001320001411000139600
SPOT001204940340303103022224020121101
WVCAf0211116630240000002000000000080002
Sentinel30402365000111406010140104938340
SPOT602028079322121202100343211332112
WVCAu03192110092342000002020000000090000
Sentinel301004059002000300002071000110700
SPOT60214026414113233201402112120123
WVCA103031325279160150100001040000900020006
Sentinel161805200019900011115091291020200000
SPOT031201847062154802212531312132324
WVDN0012000031803000020000000000150102
Sentinel71041190201802110104001026001000510
SPOT12380204138160728313322414361454112
WVDR90100000021476033000000005100050001
Sentinel711109080231240133010341020004013240
SPOT71214201226046601102422343332030
WVEC12010170002007900900110000001005112
Sentinel31010011010844865800035002003221
SPOT2320131123206813230100131000020104
WVER0070000003772160501000003000000001
Sentinel210103400002130117083224000305006050
SPOT037104103767111742101413213334132
WVGB130000000020700140009000000140006006
Sentinel7133104500120990701100661010432201
SPOT0420472437125613524310215644235142
WVGL12000100000001021100000000100000500
Sentinel9230110414010625901501091000100000
SPOT11051131122235153401111220111202011
WVHA0020000013000001000000000061340260
Sentinel21230120310001223661411812737101435
SPOT021054201311001076201013012123022
WVKA12001300025002100012906103572180000001
Sentinel10100001000922150128210201010460002
SPOT1323202110102132210602024030222300
WVZC2112500006008000306000000000007026
Sentinel133101315030222113351773412636382062
SPOT001113000000120021561322610101102
WVMA00005100000306000055000301004318
Sentinel410001140013110340070010151021010
SPOT10050114421118012303053213100160201
WVOEa12020000011000080214001311730180000000
Sentinel250003000230210201240851511001161001
SPOT0240312133061410035375335023326210
WVPC0011500000000101011031689290010000125
Sentinel300030300201010131000524000031201
SPOT802044212050333313023761120113502
WVPV33070000060000000000065001400115
Sentinel12000203020011012120100066000370400
SPOT240308342722144544120280121131211
WVRL07110510420012000503110010000010000
Sentinel300020020800021110000015411001010
SPOT316011005500342723911108300020001
WVSH20000000010002800130010000910001001
Sentinel203130001000022100101209905513103
SPOT21011101422010210122102823221431
WVSL3020370005040203001002007015231700
Sentinel400091002020643000400000771011770
SPOT017162326101133200101202643111642
WVSM200021000000201301500000100121016011120
Sentinel3233123100200101001004100217077010
SPOT00324311026034112210431118110112
WVSN42010018115050100020400016111110063
Sentinel432212612006023040054422058274012
SPOT01301201321244032122121110873110
WVSP00008000030110120200800002100120010
Sentinel3200238111216104002132021015568010
SPOT42204000215244424111051234292031
WVTC00001010006100313001000001330767130
Sentinel30010510130001401000010102224400
SPOT00101010130001014010110002505401
WVSM2000210000002013015000001001210160111110
Sentinel32331231002001010010041002170770820
SPOT003243110260341122104311181101872
WVZC0145300001000000007005100001000077
Sentinel15310020030210000000275101010200134
SPOT253210213074002101112173001332003107
WVZM12020000011000080214001311730180000000
Sentinel250003000230210201240851511001161001
SPOT0240312133061410035375335023326210

7.

Appendix B: Classifier error matrix of WorldView-2, Sentinel-2A, and SPOT-6 images using the SVM classifier

Error matrix provides detailed description of the confusion in species classification using WorldView-2, Sentinel-2A and SPOT-6 images, and SVM classifier (Table 4).

Table 4.

Error matrix of three images using Support Vector Machine.

REF
PREDACADAKAMBLBRCAfCAuCADNDRECERGBGLHAKAZCMAOeaPCPVRLSHSLSMSNSPTCZCZM
WVAC541411019050520111621001001030013
Sentinel531716815400000201000010173161510615151201
SPOT5199114011251324169118114135108171401612110137200
WVAD412525043050021000254006910030043
Sentinel151302300390841102012000141518792421002
SPOT0110149123021870401102441402012640144
WVAK0819030019353402000046640800130013
Sentinel91110128003012000304300100001013031
SPOT1551405637902010223263230580027423112
WVAM01511021218305000301130051300220032
Sentinel2012108210108320121103063212336491204
SPOT443106010026422023202001000031203300
WVBL10000186420002100210150000050010300
Sentinel057012311002002322813000052128260206
SPOT81032138742020481027033201162356357305
WVBR31526117315000030000124300409061266
Sentinel00100098320000001603000110601306123
SPOT00120094034049150330221204020121112
WVCAf327111556240130032221000900080028
Sentinel304023550004114101001150004930303
SPOT652010010006121212021000840211332303
WVCAu0352100663420021002020100010090009
Sentinel001004007702000300100076000110801
SPOT60219006914960030000002143100330
WVCA530313015910015130003040000900030063
Sentinel1660590101500002911201380331020200000
SPOT123121104120621548220101201313132303
WVDN00123000311130001200522000001501215
Sentinel010402116020180611010000000658115005130
SPOT036012413814071290123004943604542325
WVDR90200203214440330013000051100050035
Sentinel01110908023970133010301000004013201
SPOT062142022240466210012050003332013
WVEC1201090002005500300110001061005120
Sentinel3100000010006648645600012100020032130
SPOT032013010205012310100001000000000
WVER3070000003772120501100003000000010
Sentinel000034000131213088083200000305006000
SPOT737112810371071087420012303207334093
WVGB100052020207009800123350030056065
Sentinel000310450032099423010069010332233
SPOT1142047243725011024310205640235123
WVGL1201510000003221050300000100000530
Sentinel92005120414010624501501002000000060
SPOT0251710223321053806011600111202080
WVHA00206000313003001035000010606240204
Sentinel02300031216035142020131189273010244610
SPOT72105423101000045201313022103090
WVKA3001380125112100010908127270000010
Sentinel001000010002922150108210705121060026
SPOT065232013190030212002104030222302
WVZC2921032066608432315000103200007110
Sentinel133001310030220113001710412636380068
SPOT30110000800120001211302620101180
WVMA20505100000316030044113301354385
Sentinel0000011401213110340099010150026002
SPOT005036421011012323030203102100610
WVOEa502561051100008321403123630180100000
Sentinel050000003000282012408715000861006
SPOT1024031013361000100335035003326103
WVPC0011508012001039101105169860010000250
Sentinel3000303002010108319004640000312123
SPOT80000421451033313063761020113561
WVPV33070000030000200000190001400150
Sentinel12036000302001012100100054000375467
SPOT0830830222210454402008012252231203
WVRL070159642001301713311005000020002
Sentinel0120022020800021110000017710001000
SPOT01001100200030003911009900000000
WVSH103050000100628031301100001000001110
Sentinel010030001000022105101207005513125
SPOT2101050131220002100102122823221002
WVSL402537035504021100133210991523102
Sentinel00000100000064630000000023601100
SPOT1101602231101133200130122240381108
WVSM20009050001211302220011000101501105
Sentinel0233020100200101001004100215577007
SPOT063223201006004112210452116010101
WVSN42012010115054603020460110168000380
Sentinel030212012006023043074022058270082
SPOT713010016410400301221210109831098
WVSP0000480503021121202800002020120000
Sentinel32022381112361080031320210365555005
SPOT42609000225034424101051234292032
WVTC80031100109114031302101201003276702
Sentinel0001022110130001411000010102228902
SPOT766019101240000004010110002603016
WVZC013538200432100330307015100321600906
Sentinel530020030010000000275131010201001542
SPOT05321001307400200011217310033900959
WVZM20009050001211302220011000101501105
Sentinel0233020100200101001004100215577007
SPOT063223201006004112210452116010101

Acknowledgments

The University of Johannesburg (South Africa) provided the necessary financial and material support to undertake the study. We thank the National Research Foundation (NRF) of South Africa for supporting the first author through student scholarship program (Reference SFH150803134516). The authors also thank Bishop Ngobeli (Manager of the Klipriviersberg Nature Reserve) for unlimited access to the reserve and for additional transportation support to and from the reserve. We are grateful to Tumelo Molaba for all the assistance during the field survey. The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Data Availability

The authors confirm that the data supporting the findings of this study are available within the article and Tables 3 and 4 in Appendix A and Appendix B.

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Biographies of the authors are not available.

CC BY: © 2022 Society of Photo-Optical Instrumentation Engineers (SPIE)
Emmanuel Fundisi, Solomon G. Tesfamichael, and Fethi Ahmed "Investigating accuracies of WorldView-2, Sentinel-2, and SPOT-6 in discriminating morphologically similar savanna woody plant species during a dry season," Journal of Applied Remote Sensing 16(3), 034524 (25 August 2022). https://doi.org/10.1117/1.JRS.16.034524
Received: 9 February 2022; Accepted: 1 August 2022; Published: 25 August 2022
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KEYWORDS
Image classification

Spatial resolution

Photovoltaics

Surface plasmons

Vegetation

Earth observing sensors

Infrared radiation

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