Skip to main content

Advertisement

Log in

A novel plant disease prediction model based on thermal images using modified deep convolutional neural network

  • Published:
Precision Agriculture Aims and scope Submit manuscript

Abstract

With the advancement of deep learning and thermal imaging technology, prediction of plant disease before the appearance of any visual symptoms gains attention. Studies showed that before the appearance of any visual symptoms, some internal changes take place in the plant that cannot be detected externally. These changes may be captured by the thermal images which will help to predict the diseases at the earlier stage. This early prediction will increase the probability and time to recovery; reduce the use of pesticide, resulting in cost effective, quantitative and qualitative production with less environmental pollution.

In this study a plant disease prediction system based on thermal images has been developed by exploring the dynamic feature extraction capability of deep learning technology. The proposed system consists of three convolutional layers to overcome the computational overhead and the over fitting problem for small dataset. The system has been tested with a very common disease Bacterial Leaf Blight, of rice plants.

The proposed model has been evaluated using several metrics like accuracy, precision, type-I error, type-II error. This novel model predicts the disease at the earliest stage (within 48 h of the inoculation) with 95% accuracy and high precision 97.5% (2.3% Type-I error and 7.7% Type-II error). A comparative study has been done with four standard deep learning models -VGG-16, VGG-19, Resnet50 and Resnet101 and also with machine learning algorithms -Linear Regression and Support Vector Machine, to establish the superiority of the proposed model.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

Data Availability (data transparency)

The data that support the findings of this study are available on request from the corresponding author. The data are not publicly available due to privacy or ethical restrictions.

Code Availability (software application or custom code)

The code is available on request from the corresponding author.

References

  • Alpaydin, E. (2020). Introduction to machine learning. MIT press

  • Banerjee, K., Krishnan, P., & Mridha, N. (2018). Application of thermal imaging of wheat crop canopy to estimate leaf area index under different moisture stress conditions. Biosystem Engineering, 166, 13–27

    Article  Google Scholar 

  • Barz, B., & Denzler, J. (2020). Deep learning on small datasets without pre-training using cosine loss. In Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 1371–1380

  • Battalwar, P., Gokhale, J., & Bansod, U. (2015). Infrared thermography and IR camera. International Journal of Research in Science & Engineering, 1(3), 9–14

    Google Scholar 

  • Bayoumi, T. Y., & Abdullah, A. A. (2016). Application of thermal imaging sensor to early detect powdery mildew disease in wheat. Journal of Middle East North Africa Science, 10(3907), 1–8

    Google Scholar 

  • Bhakta, I., Phadikar, S., & Majumder, K. (2018). January. Importance of Thermal Features in the Evaluation of Bacterial Blight in Rice Plant. In Proceedings of the Annual Convention of the Computer Society of India. Springer, Singapore, 300–313

  • Calderón, R., Navas-Cortés, J. A., & Zarco-Tejada, P. J. (2015). Early detection and quantification of Verticillium wilt in olive using hyperspectral and thermal imagery over large areas. Remote Sensing, 7(5), 5584–5610

    Article  Google Scholar 

  • Chen, Y. R., Chao, K., & Kim, M. S. (2002). Machine vision technology for agricultural applications. Computers and electronics in Agriculture, 36(2–3), 173–191

    Article  Google Scholar 

  • Chen, P., & Shakhnovich, E. I. (2010). Thermal adaptation of viruses and bacteria. Biophysical journal, 98(7), 1109–1118

    Article  CAS  Google Scholar 

  • Chung, C. L., Huang, K. J., Chen, S. Y., Lai, M. H., Chen, Y. C., & Kuo, Y. F. (2016). Detecting Bakanae disease in rice seedlings by machine vision. Computers and electronics in Agriculture, 121, 404–411

    Article  Google Scholar 

  • Elazegui, F. (2003). Diagnosis of Common Diseases of Rice. International Rice Research Institute

  • Gull, A., Lone, A. A., & Wani, N. U. I. (2019). Biotic and Abiotic Stresses in Plants. Abiotic and Biotic Stress in Plants. IntechOpen

  • He, K., Zhang, X., Ren, S., & Sun, J. (2016). Deep residual learning for image recognition. In Proceedings of the IEEE conference on computer vision and pattern recognition, 770–778

  • Hornero, A., Zarco-Tejada, P. J., Quero, J. L., North, P. R. J., Ruiz-Gómez, F. J., Sánchez-Cuesta, R., & Hernandez-Clemente, R. (2021). Modelling hyperspectral-and thermal-based plant traits for the early detection of Phytophthora-induced symptoms in oak decline. Remote Sensing of Environment, 263, 112570

    Article  Google Scholar 

  • Kim, Y., Still, C. J., Roberts, D. A., & Goulden, M. L. (2018). Thermal infrared imaging of conifer leaf temperatures: Comparison to thermocouple measurements and assessment of environmental influences. Agricultural and Forest Meteorology, 248, 361–371

    Article  Google Scholar 

  • Krizhevsky, A., Sutskever, I., & Hinton, G. E. (2017). Imagenet classification with deep convolutional neural networks. Communications of the ACM, 60(6), 84–90

    Article  Google Scholar 

  • Lachenbruch, P. A. (2014). McNemar test. Wiley StatsRef: Statistics Reference Online

  • LeCun, Y., Kavukcuoglu, K., & Farabet, C. (2010). Convolutional networks and applications in vision. Proceedings of 2010 IEEE International Symposium on Circuits and Systems, Paris, 253–256

  • Manickavasagan, A., Jayas, D., White, N., & Paliwal, J. (2005). Applications of Thermal Imaging in Agriculture—A Review. The Canadian Society for Engineering in Agriculture, Food, and Biological Systems, 05 – 002

  • Oerke, E. C., Fröhling, P., & Steiner, U. (2011). Thermographic assessment of scab disease on apple leaves. Precision Agriculture, 12(5), 699–715

    Article  Google Scholar 

  • Omran, E. S. E. (2017). Early sensing of peanut leaf spot using spectroscopy and thermal imaging. Archives of Agronomy and Soil Science, 63(7), 883–896

  • Phadikar, S., & Sil, J. (2008). December. Rice disease identification using pattern recognition techniques. In 2008 11th International Conference on Computer and Information Technology IEEE, 420–423

  • Phadikar, S., Sil, J., & Das, A. K. (2012). Classification of rice leaf diseases based on morphological changes. International Journal of Information and Electronics Engineering, 2(3), 460–463

    Google Scholar 

  • Poblete, T., Navas-Cortes, J. A., Camino, C., Calderon, R., Hornero, A., Gonzalez-Dugo, V. … Zarco-Tejada, P. J. (2021). Discriminating Xylella fastidiosa from Verticillium dahliae infections in olive trees using thermal-and hyperspectral-based plant traits. ISPRS Journal of Photogrammetry and Remote Sensing, 179, 133–144

    Article  Google Scholar 

  • Prince, G., Clarkson, J. P., & Rajpoot, N. M. (2015). Automatic detection of diseased tomato plants using thermal and stereo visible light images.PLoS One, 10(4), e0123262

  • Rahman, C. R., Arko, P. S., Ali, M. E., Khan, M. A., Apon, S. H., Nowrin, F., & Wasif, A. (2020). Identification and recognition of rice diseases and pests using convolutional neural networks. Biosystems Engineering, 194, 112–120

    Article  Google Scholar 

  • Russell, S. J., & Norvig, P. (2016). Artificial intelligence: a modern approach. Malaysia; Pearson Education Limited

  • Sanchez, V., Prince, G., Clarkson, J. P., & Rajpoot, N. M. (2015). Registration of thermal and visible light images of diseased plants using silhouette extraction in the wavelet domain. Pattern Recognition, 48(7), 2119–2128

    Article  Google Scholar 

  • Sermanet, P., Eigen, D., Zhang, X., Mathieu, M., Fergus, R., & LeCun, Y. (2013). Overfeat: Integrated recognition, localization and detection using convolutional networks. arXiv:1312.6229.

  • Shanmugamani, R. (2018). Deep Learning for Computer Vision: Expert techniques to train advanced neural networks using TensorFlow and Keras. Packet Publishing Ltd.

  • Siddiqui, Z. S., Umar, M., Kwon, T. R., & Park, S. C. (2019). Phenotyping Through Infrared Thermography in Stress Environment. In Sabkha Ecosystems, 239–251

  • Simonyan, K., & Zisserman, A. (2014). Very deep convolutional networks for large-scale image recognition. arXiv preprint

  • Srivastava, N., Hinton, G., Krizhevsky, A., Sutskever, I., & Salakhutdinov, R. (2014). Dropout: a simple way to prevent neural networks from overfitting. The journal of machine learning research, 15(1), 1929–1958

    Google Scholar 

  • Szegedy, C., Liu, W., Jia, Y., Sermanet, P., Reed, S., & Anguelov, D. (2015). Going deeper with convolutions. Proc. of the IEEE Conference on Computer Vision and Pattern Recognition

  • Tete, T. N., & Kamlu, S. (2017). April. Detection of plant disease using threshold, k-mean cluster and ann algorithm. In 2017 2nd International Conference for Convergence in Technology (I2CT),IEEE, 523–526

  • Vadivambal, R., & Jayas, D. S. (2011). Applications of thermal imaging in agriculture and food industry—a review. Food And Bioprocess Technology, 4(2), 186–199

    Article  Google Scholar 

  • Vollmer, M., & Möllmann, K. P. (2017). Infrared thermal imaging: fundamentals, research and applications. John Wiley & Sons

  • White, H. (1992). Artificial neural networks: approximation and learning theory. Blackwell Publishers

  • Xiao, M., Ma, Y., Feng, Z., Deng, Z., Hou, S., Shu, L., & Lu, Z. (2018). Rice blast recognition based on principal component analysis and neural network. Computers and electronics in agriculture. 154, 482 – 90

  • Zhang, D., Zhou, X., Zhang, J., Lan, Y., Xu, C., & Liang, D. (2018). Detection of rice sheath blight using an unmanned aerial system with high-resolution color and multispectral imaging.PLoS One, 13(5), e0187470

  • Zhang, Y., & Ling, C. (2018). A strategy to apply machine learning to small datasets in materials science. Npj Computational Materials, 4(1), 1–8

    Article  Google Scholar 

  • Zhu, W., Chen, H., Ciechanowska, I., & Spaner, D. (2018). Application of infrared thermal imaging for the rapid diagnosis of crop disease. IFAC-PapersOnLine, 51(17), 424–430

    Article  Google Scholar 

Download references

Acknowledgements

The authors are grateful to the Maulana Abul Kalam Azad University of Technology, Technical Education Quality Improvement Programme (TEQIP) Phase III, A World Bank Project.

Funding

(information that explains whether and by whom the research was supported) Not Applicable.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ishita Bhakta.

Ethics declarations

Conflicts of interest/Competing interests (include appropriate disclosures)

There is no conflict of interest.

Additional information

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Bhakta, I., Phadikar, S., Majumder, K. et al. A novel plant disease prediction model based on thermal images using modified deep convolutional neural network. Precision Agric 24, 23–39 (2023). https://doi.org/10.1007/s11119-022-09927-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11119-022-09927-x

Keywords

Navigation