Issue 78, 2021

Zinc2+ ion inhibits SARS-CoV-2 main protease and viral replication in vitro

Abstract

Zinc deficiency is linked to poor prognosis in COVID-19 patients while clinical trials with zinc demonstrate better clinical outcomes. The molecular targets and mechanistic details of the anti-coronaviral activity of zinc remain obscure. We show that zinc not only inhibits the SARS-CoV-2 main protease (Mpro) with nanomolar affinity, but also viral replication. We present the first crystal structure of the Mpro–Zn2+ complex at 1.9 Å and provide the structural basis of viral replication inhibition. We show that Zn2+ coordinates with the catalytic dyad at the enzyme active site along with two previously unknown water molecules in a tetrahedral geometry to form a stable inhibited Mpro–Zn2+ complex. Further, the natural ionophore quercetin increases the anti-viral potency of Zn2+. As the catalytic dyad is highly conserved across SARS-CoV, MERS-CoV and all variants of SARS-CoV-2, Zn2+ mediated inhibition of Mpro may have wider implications.

Graphical abstract: Zinc2+ ion inhibits SARS-CoV-2 main protease and viral replication in vitro

Supplementary files

Article information

Article type
Communication
Submitted
02 Jul 2021
Accepted
27 Aug 2021
First published
27 Aug 2021

Chem. Commun., 2021,57, 10083-10086

Zinc2+ ion inhibits SARS-CoV-2 main protease and viral replication in vitro

L. Panchariya, W. A. Khan, S. Kuila, K. Sonkar, S. Sahoo, A. Ghoshal, A. Kumar, D. K. Verma, A. Hasan, M. A. Khan, N. Jain, A. K. Mohapatra, S. Das, J. K. Thakur, S. Maiti, R. K. Nanda, R. Halder, S. Sunil and A. Arockiasamy, Chem. Commun., 2021, 57, 10083 DOI: 10.1039/D1CC03563K

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