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Identification and Expression Analysis of LBD Genes in Moso Bamboo (Phyllostachys edulis)

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Abstract

The Lateral Organ Boundaries Domain (LBD) proteins are a class of plant-specific transcription factor family, which participate in plant growth, development, and stress response. In present study, 61 PheLBD genes were identified in moso bamboo (Phyllostachys edulis) genome. These members clustered into two major classes (Class I and Class II) based on the previous study and phylogenetic analysis, and Class I was further divided into five subgroups (Class I–Class E). The gene architecture and conserved motifs suggested the members in one subgroup shared the structural similarities and highly conserved motif compositions. Scaffold position analysis showed PheLBDs were unevenly located on 19 moso bamboo scaffolds. Synteny analysis indicated segmental duplication and transposed duplication played significant roles in PheLBD gene expansion and some PheLBD genes have been and are undergoing markedly positive purifying selection during evolution. A large number of light-responsive elements, abiotic-stress and hormone-response elements were discovered in the promoter of PheLBDs. Public RNA-seq data helps to analyze the expression profile of PheLBD genes in 14 moso bamboo tissues. And we also found most genes in class II were significantly up-regulated under auxin naphthaleneacetic acid (NAA) treatment, but were sensitive after Gibberellins (GA)-treated. Moreover, quantitative real-time reverse transcription PCR (RT-qPCR) analysis showed that PheLBDs have different response to salt and drought stress as well as abscisic acid (ABA) and Methyl jasmonate (MeJA). Overall, these results paved a way for the further functional studies of PheLBDs.

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Acknowledgements

This work was supported by the National Natural Science Foundation of China (31670672), Postdoctoral Science Foundation of China (2019M652166), the Graduate Innovation Fund from Anhui Agricultural University (2020ysj-55) and Project of introducing and stabilizing talents in Anhui Agricultural University (yj2019-10).

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  1. Yameng Gao and Kang Wang have contributed equally to this work.

Authors and Affiliations

  1. National Engineering Laboratory of Crop Stress Resistance Breeding, Anhui Agricultural University, Hefei, 230036, People’s Republic of China

    Yameng Gao & Yan Xiang

  2. Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, People’s Republic of China

    Kang Wang, Ruijia Wang, Linna Wang, Hongxia Liu, Min Wu & Yan Xiang

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Contributions

YMG participated in the revision of the manuscript, KW wrote the draft manuscript and conceived main frame of this study, RJW processed the experimental data, LNW and HXL designed and performed experiments, MW assisted to complete the writing of this paper, YX, the correspondence author, provided financial support for the article and designed the way and frame of this research. All authors read and approved the revised manuscript.

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Correspondence to Yan Xiang.

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Gao, Y., Wang, K., Wang, R. et al. Identification and Expression Analysis of LBD Genes in Moso Bamboo (Phyllostachys edulis). J Plant Growth Regul 41, 2798–2817 (2022). https://doi.org/10.1007/s00344-021-10475-3

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