Abstract
The spectroscopic characterization (1H, 13C{1H} NMR, UV–Vis) and single-crystal X-ray diffraction (scXRD) analysis accomplished by inspection of the Hirshfeld surface of bis(3-thienoyl) disulfide (1) is described. The title compound 1 crystallizes in the monoclinic space group P21/n. The unit cell parameters are a = 7.9959(3) Å, b = 6.4348(3) Å, c = 22.4924(9) Å, β = 100.108(4)°, V = 1139.32(8) Å3, Z = 4, Rgt(F) = 0.0278, wRref(F2) = 0.0667. The packing of 1 is dominated by S⋯O and S⋯S interactions, giving a 2D layer structure parallel to (101). The X‐ray crystal structure analysis revealed the packing of 1 is dominated by S⋯O and S⋯S interactions, giving a 2D layer structure parallel to (101). The intermolecular interactions in 1 were analyzed using the Hirshfeld surface method including 2D fingerprint plots and enrichment ratios (E), which shows that the most favored intermolecular contacts are the O⋯H and C⋯S indicated by E values above 1.30. The interaction energies between molecular pairs revealed the importance of the weak O⋯H and C⋯S interactions in stabilizing the molecular structure of 1.
Graphic Abstract
Single crystal X-ray structure analysis, DFT calculations and Hirshfeld surface analysis to identify intermolecular interactions within the solid state structure of bis(3-thienoyl) disulfide (1).
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References
Bagi N, Kaizer J, Speier G (2015) Oxidation of thiols to disulfides by dioxygen catalyzed by a bioinspired organocatalyst. RSC Adv 5:45983–45986
Lobo V, Patil A, Phatak A, Chandra N (2010) Free radicals, antioxidants and functional foods: impact on human health. Pharmacogn Rev 4:118–126
Regino CAS, Richardson DE (2007) Bicarbonate-catalyzed hydrogen peroxide oxidation of cysteine and related thiols. Inorg Chim Acta 360:3971–3977
Sanz R, Aguado R, Pedrosa MR, Arnáiz FJ (2002) Simple and selective oxidation of thiols to disulfides with dimethylsulfoxide catalyzed by dichlorodioxomolybdenum(VI). Synthesis (Stuttg) 7:856–858
Silveira CC, Mendes SR (2007) Catalytic oxidation of thiols to disulfides using iodine and CeCl3·7H2O in graphite. Tetrahedron Lett 48:7469–7471
Hekmatshoar R, Sajadi S, Heravi MM, Bamoharram FF (2007) H14[NaP5W30O110] as a heterogeneous recyclable catalyst for the air oxidation of thiols under solvent free conditions. Molecules 12:2223–2228
Supale A, Gokavi G (2008) Oxidation of thiols to disulfides using H2O2 catalyzed by recyclable chromic potassium sulphate at room temperature. React Kinet Catal Lett 93:141–148
Leite SLS, Pardini VL, Viertler H (1990) Synthetic communications: an international journal for rapid communication of synthetic organic chemistry. Synth Commun 20:393–397
Salimi A, Hallaj R (2005) Catalytic oxidation of thiols at preheated glassy carbon electrode modified with abrasive immobilization of multiwall carbon nanotubes: applications to amperometric detection of thiocytosine, l-cysteine and glutathione. Talanta 66:967–975
Sridhar M, Kumara Vadivel S, Bhalerao UT (1998) Novel method for preparation of symmetric disulfides from thiols using enzyme catalysis. Synth Commun 28:1499–1502
Khalyfeh KAL, Taher D, Helal W et al (2020) Synthesis and characterization of 1,4-chalcogenesters bearing 5-membered heterocycles. J Chem Sci 132(117):1–16
Patai S, Rappoport Z (2006) The chemistry of peroxides, 1st edn. Wiley, New York
Niyomura O, Kato S, Inagaki S (2000) An unusual planar diacyl ditelluride (2-MeOC6H4COTe)2: the origin of its planarity. J Am Chem Soc 122:2132–2133
Niyomura O, Tani K, Kato S (1999) A facile synthesis of potassium selenocarboxylates and their oxidation with XeF2 to diacyl diselenides. Heteroat Chem 10:373–379
Chou JH, Rauchfuss TB, Szczepura LF (1998) Studies on the electroactive heterocycles C6S8(0/2-) and C6S6O2(0/2-) and related metal complexes. J Am Chem Soc 120:1805–1811
Rout GC, Seshasayee M, Subrahmanyan T, Aravamudan G (1983) Structure of dibenzoyldisulphane, C14H10O2S2. Acta Crystallogr C 39:1387–1389
Paul C, Srikrishnan T (2004) Crystal and molecular structure of dibenzoyl disulfide. J Chem Crystallogr 34:211–217
Singh S, Chaturvedi J, Bhattacharya S, Nöth H (2011) Silver(I) catalyzed oxidation of thiocarboxylic acids into the corresponding disulfides and synthesis of some new Ag(I) complexes of thiophene-2-thiocarboxylate. Polyhedron 30:93–97
Vandavasi JK, Hu WP, Chen CY, Wang JJ (2011) Efficient synthesis of unsymmetrical disulfides. Tetrahedron 67:8895–8901
Wang D, Wu SY, Li HP, Yang Y, Roesky HW (2017) Synthesis and characterization of copper complexes with the N-(2,6-diisopropylphenyl)-N′-acylthiourea ligands. Eur J Inorg Chem 2017:1406–1413
Niyomura O, Kitoh Y, Nagayama K-I, Kato S (1999) Di (acyl) and di (thioacyl) disulfides: a facile synthesis and structural analysis. Sulfur Lett 22:195–207
Bereman RD, Baird DM, Bordner J, Dorfman JR (1983) Resonance induced properties in monothiocarbamates derived from aromatic amines: comparison of the coordination chemistry of indole and indoline monothiocarbamates. Ployhedron 2:25–30
Beyer L, Richter R, Seidelmann O (1999) Ferrocensubstituierte 1,3-bidentate Liganden und ihre heteronuklearen Übergangsmetallchelate. J für Prakt Chemie 341:704–726
Imrie C, Cook L, Levendis DC (2001) An investigation of the chemistry of ferrocenoyl derivatives. The synthesis and reactions of ferrocenoyl imidazolide and its derivatives. J Organomet Chem 637–639:266–275
Wang Q, Shu Y, Hou X (2011) (Furan-2-yl)[(furan-2-yl)carbonyldisulfanyl]methanone. Acta Crystallogr. https://doi.org/10.1107/S160053681104356X
Mukhlall JA, Noll BC, Hersh WH (2011) Synthesis of chiral disulfides: potential reagents for enantioselective sulfurization. J Sulfur Chem 32:199–212
Erben MF, Della Védova CO, Willner H, Trautner F, Oberhammer H, Boese R (2005) Fluoroformyl trifluoroacetyl disulfide, FC(O)SSC(O)CF 3: synthesis, structure in solid and gaseous states, and conformational properties. Inorg Chem 44:7070–7077
Erben MF, Della Védova CO, Willner H, Boese R (2006) Synthesis, structure and conformational properties of fluoroformylchlorodifluoroacetyl disulfide, FC(O)SSC(O)CF2Cl: conformational transferability in -C(O)SSC(O)- compounds. Eur J Inorg Chem 2006:4418–4425
Li F, Yin H-D, Hong M, Zhai J, Wang D-Q (2006) Bis(N,N-dicyclohexylthiocarbamoyl) disulfide. Acta Crystallogr Sect E E62:1417–1418
Zysman-Colman E, Harpp DN (2004) Comparison of the structural properties of compounds containing the XSSX moiety (X = H, Me, R, Cl, Br, F, OR). J Sulfur Chem 25:291–316
Fulmer GR, Miller AJM, Sherden NH, Gottlieb HE, Nudelman A, Stoltz BM, Bercaw JE, Goldberg KI (2010) NMR chemical shifts of trace impurities: common laboratory solvents, organics, and gases in deuterated solvents relevant to the organometallic chemist. Organometallics 29:2176–2179
Sheldrick GM (1990) Phase annealing in SHELX-90: direct methods for larger structures. Acta Crystallogr Sect A A46:467–473
Zhu Y, Wolf MO (2000) Charge transfer and delocalization in conjugated (ferrocenylethynyl)oligothiophene complexes. J Am Chem Soc 122:10121–10125
Sheldrick GM (2008) A short history of SHELX. Acta Crystallogr Sect A A64:112–122
Farrugia LJ (2012) WinGX and ORTEP for windows: an update. J Appl Crystallogr 45:849–854
Neese F (2012) The ORCA program system. WIREs Comput Mol Sci 2:73–78
Neese F (2017) Software update: the ORCA program system, version 4.0. WIREs Comput Mol Sci e1327:1–6
Grimme S (2006) Semiempirical hybrid density functional with perturbative second-order correlation. J Chem Phys. https://doi.org/10.1063/1.2148954
Weigend F, Ahlrichs R (2005) Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: design and assessment of accuracy. Phys Chem Chem Phys 7:3297–3305
Barone V, Cossi M (1998) Quantum calculation of molecular energies and energy gradients in solution by a conductor solvent mode. J Phys Chem A 102:1995–2001
Bauernschmitt R, Ahlrichs R (1996) Treatment of electronic excitations within the adiabatic approximation of time dependent density functional theory. Chem Phys Lett 256:454–464
Allouche A (2011) Software news and updates Gabedit—a graphical user interface for computational chemistry softwares. J Comput Chem 32:174–182
Turner MJ, McKinnon JJ, Wolff SK, Grimwood DJ, Spackman PR, Jayatilaka D, Spackman MA (2017) CrystalExplorer17. University of Western Australia
Pauling L (1960) The nature of the chemical bond by Linus Pauling, 3rd edn. Cornell University Press, Ithaca, NY
Mayer I (1983) Charge, bond order and valence in the AB initio SCF theory. Chem Phys Lett 97:270–274
Mayer I (1984) Bond order and valence: relations to Mulliken’s population analysis. Int J Quantum Chem 26:151–154
Mayer I (1985) Bond orders and valences in the SCF theory: a comment. Theor Chim Acta 67:315–322
Van Wart HE, Shipman LL, Scheraga HA (1975) Theoretical and experimental evidence for a nonbonded 1,4 carbon-sulfur interaction in organosulfur compounds. J Phys Chem 79:1436–1447
Poppitz EA, Hildebrandt A, Korb M, Schaarschmidt D, Lang H (2014) Synthesis, properties, and electron transfer studies of ferrocenyl thiophenes. Zeitschrift fur Anorg und Allg Chemie 640:2809–2816
Poppitz EA, Korb M, Lang H (2014) Crystal structure of 3-{1’-[3,5-bis(trifluoromethyl)phenyl]ferrocenyl}-4-bromothiophene. Acta Crystallogr E70:238–241
Taher D, Awwadi FF, Speck JM et al (2017) Heterocyclic-based ferrocenyl carboselenolates: synthesis, solid-state structure and electrochemical investigations. J Organomet Chem 845:55–62
Rowland RS, Taylor R (1996) Intermolecular nonbonded contact distances in organic crystal structures: comparison with distances expected from van der Waals Radii. J Phys Chem 100:7384–7391
Alvarez S (2013) A cartography of the van der Waals territories. Dalton Trans 42:8617–8636
Hirshfeld FL (1977) Bonded-atom fragments for describing molecular charge densities. Theor Chim Acta (Berl) 44:129–138
McKinnon JJ, Spackman MA, Mitchell AS (2004) Novel tools for visualizing and exploring intermolecular interactions in molecular crystals. Acta Crystallogr B 60:627–668
Spackman MA, McKinnon JJ (2002) Fingerprinting intermolecular interactions in molecular crystals. CrystEngComm 4:378–392
Liu X, Du L, Zhang W, Li R, Feng F, Feng X (2019) Syntheses, structures and Hirshfeld surface analyses of two 3D supramolecules based on nitrogen-heterocyclic tricarboxylate ligand. J Mol Struct 1194:138–143
Jelsch C, Ejsmont K, Huder L (2014) The enrichment ratio of atomic contacts in crystals, an indicator derived from the Hirshfeld surface analysis. IUCrJ 1:119
Tan SL, Jotani MM, Tiekink ERT (2019) Utilizing Hirshfeld surface calculations, non-covalent interaction (NCI) plots and the calculation of interaction energies in the analysis of molecular packing. Acta Crystallogr E 75:308
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We are grateful to the Deutsche Forschungsgemeinschaft (DFG) for a visiting fellowship of Al Khalyfeh, Kahled.
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Al Khalyfeh, K., Taher, D., Helal, W. et al. Crystal Structure and Hirshfeld Surface Analysis of Bis(3-thienoyl) Disulfide. J Chem Crystallogr 52, 113–121 (2022). https://doi.org/10.1007/s10870-021-00896-z
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DOI: https://doi.org/10.1007/s10870-021-00896-z