Abstract
Bacterial spot is a disease that affects tomato worldwide reducing its yield and quality. It is caused by different Xanthomonas spp., among which is Xanthomonas vesicatoria. Copper-based bactericides are generally used to control this disease, although nowadays sustainable strategies are being searched to efficiently replace their use. Our aim was to select native bacteria from tomato rhizosphere with biocontrol properties against X. vesicatoria. We selected, characterized, and identified three novel strains, two closely related to Bacillus velezensis (VMA11p and VM05) and one closely related to Pseudomonas soli (VMAP1), that in vitro antagonized X. vesicatoria. We evaluated the efficacy of the three rhizobacteria and their cell-free supernatants to control bacterial spot using the model tomato-X. vesicatoria in plants grown in pots, in greenhouse conditions. Bacterial suspensions of VMA11p and VMAP1, applied to the soil by irrigation, significantly (P < 0.05) reduced bacterial spot severity by 53.9% and 44.2%, respectively. Nevertheless, the most effective strategy to control bacterial spot was achieved using the cell-free supernatant produced by VMA11p, VM05 or VMAP1 applied as foliar spray, which significantly (P < 0.05) reduced the severity of the disease by 98.5%, 94.2% and 75.2%, respectively. None of the treatments reduced the growth of tomato plants. Our results suggest that the use of these novel strains of Bacillus and Pseudomonas and/or their metabolic products could be used for the development of biocontrol strategies for the management of bacterial spot in tomato.
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An, S.-Q., Potnis, N., Dow, M., Vorhölter, F.-J., He, Y.-Q., Becker, A., Teper, D., Li, Y., Wang, N., Bleris, L., & Tang, J. L. (2020). Mechanistic insights into host adaptation, virulence and epidemiology of the phytopathogen Xanthomonas. FEMS Microbiology Reviews, 44(1), 1–32.
Aznar, A., & Dellagi, A. (2015). New insights into the role of siderophores as triggers of plant immunity: What can we learn from animals? Journal of Experimental Botany, 66(11), 3001–3010.
Bacon, C. W., Palencia, E. R., & Hinton, D. M. (2015). Abiotic and biotic plant stress-tolerant and beneficial secondary metabolites produced by endophytic Bacillus species. In Plant Microbes Symbiosis: Applied Facets (pp. 163-177): Springer.
Borriss, R., Wu, H., & Gao, X. (2019). Secondary metabolites of the plant growth promoting model Rhizobacterium Bacillus velezensis FZB42 are involved in direct suppression of plant pathogens and in stimulation of plant-induced systemic resistance. In Secondary Metabolites of Plant Growth Promoting Rhizomicroorganisms (pp. 147-168): Springer.
Cadmus, M. C., Rogovin, S. P., Burton, K. A., Pittsley, J. E., Knutson, C. A., & Jeanes, A. (1976). Colonial variation in Xanthomonas campestris NRRL B-1459 and characterization of the polysaccharide from a variant strain. Canadian Journal of Microbiology, 22(7), 942–948.
Cappuccino, J. G., & Sherman, N. (2005). Microbiology: A laboratory manual.
da Silva, R. S., Moutinho, B. L., dos Santos, D. R., Vasconcelo-Rodrigues, I., Talamini, V., Fernandes, M. F., et al. (2018). Using antagonistic soil bacteria and their cell-free filtrates to control the black rot pathogen Xanthomonas campestris pv. campestris. Journal of Phytopathology, 166(7–8), 494–501.
Debois, D., Jourdan, E., Smargiasso, N., Thonart, P., De Pauw, E., & Ongena, M. (2014). Spatiotemporal monitoring of the antibiome secreted by Bacillus biofilms on plant roots using MALDI mass spectrometry imaging. Analytical Chemistry, 86(9), 4431–4438.
Di Rienzo, J. (2017). InfoStat versión 2017. Grupo InfoStat, FCA, Universidad Nacional de Córdoba, Argentina. URL http://www.infostat.com.ar.
Fan, B., Blom, J., Klenk, H.-P., & Borriss, R. (2017). Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis form an “operational group B. amyloliquefaciens” within the B. subtilis species complex. Frontiers in Microbiology, 8(22), https://doi.org/10.3389/fmicb.2017.00022.
Felipe, V., Romero, A., Montecchia, M. S., Vojnov, A. A., Bianco, M. I., & Yaryura, P. M. (2018). Xanthomonas vesicatoria virulence factors involved in early stages of bacterial spot development in tomato. Plant Pathology, 67(9), 1936–1943.
Fira, D., Dimkić, I., Berić, T., Lozo, J., & Stanković, S. (2018). Biological control of plant pathogens by Bacillus species. Journal of Biotechnology, 285, 44–55.
Glick, B. R. (2020). Biocontrol of Bacteria and fungi. In Beneficial Plant-Bacterial Interactions (pp. 181-230): Springer.
Graves, A., & Alexander, S. (2002). Managing bacterial speck and spot of tomato with acibenzolar-S-methyl in Virginia. Plant Health Progress, 3(1), 11.
Jones, J. B., Zitter, T. A., Momol, T. M., & Miller, S. A. (2014). Compendium of tomato diseases and pests.
Keshavarz-Tohid, V., Vacheron, J., Dubost, A., Prigent-Combaret, C., Taheri, P., Tarighi, S., Taghavi, S. M., Moënne-Loccoz, Y., & Muller, D. (2019). Genomic, phylogenetic and catabolic re-assessment of the Pseudomonas putida clade supports the delineation of Pseudomonas alloputida sp. nov., Pseudomonas inefficax sp. nov., Pseudomonas persica sp. nov., and Pseudomonas shirazica sp. nov. Systematic and Applied Microbiology, 42(4), 468–480.
Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35(6), 1547–1549. https://doi.org/10.1093/molbev/msy096.
Labuschagne, N., Pretorius, T., & Idris, A. (2010). Plant growth promoting rhizobacteria as biocontrol agents against soil-borne plant diseases. In Plant growth and health promoting bacteria (pp. 211-230): Springer.
Lamichhane, J. R., Osdaghi, E., Behlau, F., Köhl, J., Jones, J. B., & Aubertot, J.-N. (2018). Thirteen decades of antimicrobial copper compounds applied in agriculture. A review. Agronomy for Sustainable Development, 38(3), 28.
Liu, G., Lin, X., Xu, S., Liu, G., Liu, F., & Mu, W. (2020). Screening, identification and application of soil bacteria with nematicidal activity against root-knot nematode (Meloidogyne incognita) on tomato. Pest Management Science, 76(6), 2217–2224.
Liu, K., Garrett, C., Fadamiro, H., & Kloepper, J. W. (2016). Induction of systemic resistance in Chinese cabbage against black rot by plant growth-promoting rhizobacteria. Biological Control, 99, 8–13.
Malamud, F., Torres, P. S., Roeschlin, R., Rigano, L. A., Enrique, R., Bonomi, H. R., Castagnaro, A. P., Marano, M. R., & Vojnov, A. A. (2011). The Xanthomonas axonopodis pv. citri flagellum is required for mature biofilm and canker development. Microbiology, 157(3), 819–829.
Marin, V. R., Ferrarezi, J. H., Vieira, G., & Sass, D. C. (2019). Recent advances in the biocontrol of Xanthomonas spp. World Journal of Microbiology and Biotechnology, 35(5), 72. https://doi.org/10.1007/s11274-019-2646-5.
Nanda, A. K., Andrio, E., Marino, D., Pauly, N., & Dunand, C. (2010). Reactive oxygen species during plant-microorganism early interactions. Journal of Integrative Plant Biology, 52(2), 195–204.
Nautiyal, C. S. (1999). An efficient microbiological growth medium for screening phosphate solubilizing microorganisms. FEMS Microbiology Letters, 170(1), 265–270.
Omoboye, O. O., Oni, F. E., Batool, H., Yimer, H., De Mot, R., & Höfte, M. (2019). Pseudomonas cyclic lipopeptides suppress the rice blast fungus Magnaporthe oryzae by induced resistance and direct antagonism. Frontiers in Plant Science, 10, 901.
Paret, M. L., Palmateer, A. J., & Knox, G. W. (2013). Evaluation of a light-activated nanoparticle formulation of titanium dioxide with zinc for management of bacterial leaf spot on rosa ‘Noare’. HortScience, 48(2), 189–192.
Pascual, J., García-López, M., Carmona, C., & Sousa, T. d. S., de Pedro, N., Cautain, B., et al. (2014). Pseudomonas soli sp. nov., a novel producer of xantholysin congeners. Systematic and Applied Microbiology, 37(6), 412–416.
Potnis, N., Timilsina, S., Strayer, A., Shantharaj, D., Barak, J. D., Paret, M. L., Vallad, G. E., & Jones, J. B. (2015). Bacterial spot of tomato and pepper: Diverse Xanthomonas species with a wide variety of virulence factors posing a worldwide challenge. Molecular Plant Pathology, 16(9), 907–920.
Qessaoui, R., Bouharroud, R., Furze, J., El Aalaoui, M., Akroud, H., Amarraque, A., et al. (2019). Applications of new rhizobacteria Pseudomonas isolates in agroecology via fundamental processes complementing plant growth. Scientific Reports, 9(1), 1–10.
Rabbee, M. F., Ali, M., Choi, J., Hwang, B. S., Jeong, S. C., & Baek, K.-h. (2019). Bacillus velezensis: A valuable member of bioactive molecules within plant microbiomes. Molecules, 24(6), 1046.
Ritchie, D. F., & Dittapongpitch, V. (1991). Copper-and streptomycin-resistant strains and host differentiated races of Xanthomonas campestris pv. vesicatoria in North Carolina. Plant Disease, 75, 733–736.
Romero, A., Kousik, C., & Ritchie, D. (2001). Resistance to bacterial spot in bell pepper induced by acibenzolar-S-methyl. Plant Disease, 85(2), 189–194.
Romero, A. M., Correa, O. S., Moccia, S., & Rivas, J. G. (2003). Effect of Azospirillum-mediated plant growth promotion on the development of bacterial diseases on fresh-market and cherry tomato. Journal of Applied Microbiology, 95(4), 832–838.
Santoyo, G., Orozco-Mosqueda, M. d. C., & Govindappa, M. (2012). Mechanisms of biocontrol and plant growth-promoting activity in soil bacterial species of Bacillus and Pseudomonas: A review. Biocontrol Science and Technology, 22(8), 855–872.
Shemesh, M., & Chai, Y. (2013). A Combination of Glycerol and Manganese Promotes Biofilm Formation in Bacillus subtilis via Histidine Kinase KinD Signaling. Journal of Bacteriology, 195, 2747–2754.
Schwyn, B., & Neilands, J. B. (1987). Universal chemical assay for the detection and determination of siderophores. Analytical Biochemistry, 160(1), 47–56.
Sharma, S., & Bhattarai, K. (2019). Progress in developing bacterial spot resistance in tomato. Agronomy, 9(1), 26.
Weisburg, W. G., Barns, S. M., Pelletier, D. A., & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. Journal of Bacteriology, 173(2), 697–703. https://doi.org/10.1128/jb.173.2.697-703.1991.
Weng, J., Wang, Y., Li, J., Shen, Q., & Zhang, R. (2013). Enhanced root colonization and biocontrol activity of Bacillus amyloliquefaciens SQR9 by abrB gene disruption. Applied Microbiology and Biotechnology, 97(19), 8823–8830.
Yaryura, P. M., Leon, M., Correa, O. S., Kerber, N. L., Pucheu, N. L., & Garcia, A. F. (2008). Assessment of the role of chemotaxis and biofilm formation as requirements for colonization of roots and seeds of soybean plants by Bacillus amyloliquefaciens BNM339. Current Microbiology, 56(6), 625–632.
Acknowledgements
We thank technical assistance: Albino Rivas and Horacio Ledesma (from Plant Pathology at Faculty of Agronomy, University of Buenos Aires) in the biocontrol trials.
MIB, NM and PMY are Career Investigators of CONICET, VF is a postdoctoral fellow from CONICET, and AMR is professor and researcher at the UBA.
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This work was supported by ANPCyT (PICT 2017-2699), project PIO CONICET-UNVM (grant number 20320150100008CO), PIODO (grant number N° 0058/2018 MinCyT, Córdoba, Argentina), PIO (grant number Nº 41/2020 MinCyT Córdoba, GRFT 109/2017 MinCyT Córdoba, UNVM (594/2018) and UBACyT (grant number 20020170100695BA).
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All authors contributed to the study conception and design. Material preparation, data collection and analysis were performed by V. Felipe, M.I. Bianco, M. Terrestre, N. Mielnichuk. The first draft of the manuscript was written by M.I. Bianco and P.M. Yaryura, all authors commented on previous versions of the manuscript. All authors read and approved the final manuscript.
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Felipe, V., Bianco, M., Terrestre, M. et al. Biocontrol of tomato bacterial spot by novel Bacillus and Pseudomonas strains. Eur J Plant Pathol 160, 935–948 (2021). https://doi.org/10.1007/s10658-021-02297-6
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DOI: https://doi.org/10.1007/s10658-021-02297-6