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Materials, Methods, and Experiments in the Study of Black Sea Algal Viruses

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Abstract

Major studies of the Black Sea algal viruses in Russia have been conducted at scientific institutes located in the city of Sevastopol. A review of the methodological approaches used during 2002–2019 shows that both classical virological methods and methods that were recently developed and patented (among them those by the authors) are applicable to the search for, isolation, and study of algal viruses. The study of samples of clinical material and material of aquatic organisms, as well as model experiments, including those using a unique laboratory apparatus and a test stand, revealed new data on the biology and ecology of marine viruses. Based on the results from these studies, it was proposed to use algal viruses monitoring as a component in aquatic environment monitoring, in which algal viruses are considered as biological indicators and/or markers.

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REFERENCES

  1. Aleksandrov, V.V., Elektrofizika presnykh vod (Electrophysics of Fresh Waters), Leningrad: Gidrometeoizdat, 1985.

  2. Stepanova, O.A., UA Declaration patent 65864A UA, MKU 7 C12 N 1/12, Promyslova Vlasnist’: Ofitsiynyi Byull., 2004, no. 4.

  3. Drucker, V.V. and Dutova, N.V., Study of the morphological diversity of bacteriophages in Lake Baikal, Dokl. Biol. Sci., 2006, vol. 410, no. 1, pp. 421–423.

    Article  CAS  Google Scholar 

  4. Drucker, V.V. and Dutova, N.V., Bacteriophages as a new trophic link in the ecosystem of the deep-water Lake Baikal, Dokl. Biol. Sci., 2009, vol. 427, pp. 339–342.

    Article  CAS  Google Scholar 

  5. Drucker, V.V., Dutova, N.V., Kovadlo, A.S., et al., Virological and bacteriological monitoring of the ecosystem of the oligotrophic Lake Baikal, in Materialy mezhdunarodnoi nauchnoi konferentsii “Problemy ustoichivogo funktsionirovaniya vodnykh i nazemnykh ekosistem” (Rostov-na-Donu, 9–12 oktyabrya 2006 g.) (Proc. Int. Sci. Conf. “Problems of Sustainable Functioning of Aquatic and Terrestrial Ecosystems”, Rostov-on-Don, October 9–12, 2006), Rostov-on-Don: Rostov. Gos. Univ., 2006, pp. 118–121.

  6. Drucker, V.V., Dutova, N.V., Kovadlo, A.S., and Kostornova, T.Ya., Size structure, seasonal dynamics and vertical distribution of bacteriophages of Lake Baikal, Izv. Irkutsk. Gos. Univ., Nauki Zemle, 2008, vol. 1, no. 1, pp. 189−197.

    Google Scholar 

  7. Drucker, V.V., Dutova, N.V., and Kovadlo, A.S., Virioplankton and bacterioplankton of the high-mountain Lake Hovsgol (Mongolia), Dokl. Biol. Sci., 2011, vol. 440, pp. 293–296.

    Article  CAS  Google Scholar 

  8. Dutova, N.V. and Drucker, V.V., Morphological and dimensional characteristics of viruses of Lake Baikal, Gidrobiol. Zh., 2009, vol. 45, no. 4, pp. 82–89.

    Google Scholar 

  9. Dutova, N.V. and Drucker, V.V., Viral community of biofilms forming on different substrates under natural conditions of Lake Baikal, Dokl. Biol. Sci., 2013, vol. 451, no. 1, pp. 238–240.

    Article  CAS  Google Scholar 

  10. Kopylov, A.I., The role of viruses in structure and functioning of microbial communities in freshwater ecosystems, Zh. Sib. Fed. Univ., Biol., 2013, vol. 6, no. 4, pp. 354–367.

    Google Scholar 

  11. Kopylov, A.I., Kosolapov, D.B., and Zabotkina, E.A., Viruses in the plankton of the Rybinsk Reservoir, Microbiology, 2007, vol. 76, no. 6, pp. 782–790.

    Article  CAS  Google Scholar 

  12. Kopylov, A.I., Kosolapov, D.B., and Zabotkina, E.A., Distribution of viruses and their impact on bacterioplankton in mesotrophic and eutrophic reservoirs, Inland Water Biol., 2008, vol. 1, pp. 46–53. https://doi.org/10.1007/s12212-008-1008-z

    Article  Google Scholar 

  13. Kopylov, A.I., Kosolapov, D.B., Zabotkina, E.A., and Straskrabova, V., Distribution of picocyanobacteria and virioplankton in mesotrophic and eutrophic reservoirs: the role of viruses in mortality of picocyanobacteria, Biol. Bull., 2010, vol. 37, no. 6, pp. 565–573. https://doi.org/10.1134/S1062359010060038

    Article  CAS  Google Scholar 

  14. Kopylov, A.I., Kosolapov, D.B., and Zabotkina, E.A., Virus impact on heterotrophic bacterioplankton of water reservoirs, Microbiology, 2011, vol. 80, no. 2, pp. 228–236.

    Article  CAS  Google Scholar 

  15. Latushkin, A.A., Multichannel light attenuation coefficient meter for oceanographic subsatellite studies, in Materialy mezhdunarodnoi nauchnoi konferentsii “Sovremennye tekhnologii proektirovaniya upravlyayushchikh i mekhatronnykh system” (Sevastopol, 16–19 aprelya 2013 g.) (Proc. Int. Sci. Conf. “Modern Technologies for the Design of Control and Mechatronic Systems”, Sevastopol, April 16–19, 2013), Sevastopol: Sevastop. Nats. Tekh. Univ., 2013, pp. 231–236.

  16. Likhoshvai, E.V., There are viruses in every drop of water, Nauka Pervykh Ruk, 2016, vol. 70, no. 4, pp. 88–94.

    Google Scholar 

  17. Stepanova, O.A., UA Patent 97293 C2 UA, IPC C12N 1/12, Promyslova Vlasnist’: Ofitsiynyi Byull., 2012, no. 2, pp. 3−91.

  18. Stelmakh, L.V. and Stepanova, O.A., Influence of virus infection on the growth of green algae Tetraselmis viridis in culture, Sist. Kontrolya Okruzh. Sredy, 2019, vol. 36, pp. 93–99.

    Google Scholar 

  19. Stepanova, O.A., Marine bacteria and viruses in the water and bottom sediments of Sevastopol bays, Russ. J. Ecol., 2001, vol. 32, no. 1, pp. 56–57.

    Article  Google Scholar 

  20. Stepanova, O.A., Ekologiya allokhtonnykh i avtokhtonnykh virusov Chernogo morya (Ecology of Allochthonous and Autochthonous Viruses in the Black Sea), Sevastopol: Mir, 2004.

  21. Stepanova, O.A., Some information about virioplankton and its individual members, Usp. Sovrem. Biol., 2005, vol. 125, no. 6, pp. 543–555.

    Google Scholar 

  22. Stepanova, O.A., Seasonality of fish contamination with algal viruses (Black Sea), in Materialy mezhdunarodnoi nauchno-prakticheskoi konferentsii “Problemy immunologii, patologii i okhrany zdorov’ya ryb i drugikh gidrobiontov” (Borok, 17–20 iyulya 2007 g.) (Proc. Int. Sci.-Pract. Conf. “Problems of Immunology, Pathology and Health Protection of Fish and Other Aquatic Organisms”, Borok, July 17–20, 2007), Moscow: Rossel’khozakademiya, 2007, pp. 273–277.

  23. Stepanova, O.A., Black Sea algal viruses, Russ. J. Mar. Biol., 2016, vol. 42, no. 2, pp. 123–127.

    Article  Google Scholar 

  24. Stepanova, O.A., The interaction between algal viruses and the mussel Mytilus galloprovincialis Lamarck, 1819 (Bivalvia: Mytilidae) in experiments, Russ. J. Mar. Biol., 2017, vol. 43, no. 2, pp. 127–131.

    Article  Google Scholar 

  25. Stepanova, O.A., Results of search for algal viruses—a reflection of the geographical distribution of microalgae, in Sbornik statei po materialam nauchno-prakticheskoi konferentsii s mezhdunarodnym uchastiem “Ekologicheskaya, promyshlennaya i energeticheskaya bezopasnost2017” (Sevastopol, 11–15 sentyabrya 2017 g.) (Collect. Pap. Proc. Sci.-Pract. Conf. Int. Participation “Environmental, Industrial and Energy Security—2017”, Sevastopol, September 11−15, 2017), Sevastopol: Sevastop. Gos. Univ., 2017, pp. 1284−1288.

  26. Stepanova, O.A., Response reactions of hydrosphere viruses and their one-cellular hosts to environmental factors, Sist. Kontrolya Okruzh. Sredy, 2018, vol. 32, pp. 99–108.

    Google Scholar 

  27. Stepanova, O.A., Monitoring results of the Black Sea algal viruses from the bays of Sevastopol and other Crimean bays (2002–2018), Sist. Kontrolya Okruzh. Sredy, 2018, vol. 34, pp. 122–127.

    Google Scholar 

  28. Stepanova, O.A., Monitoring of algal viruses of indicators to environmental situation microalgaes Tetraselmis viridis and Phaeodactylum tricornutum in Sevastopol bays (2002–2018), Uch. Zap. Krym. Fed. Univ. im. V.I. Vernadskogo: Biol., Khim., 2018, vol. 4(70), no. 3, pp. 174–181.

  29. Stepanova, O.A., Boyko, A.L., Gordienko, A.I., et al., Characterization of virus of Tetraselmis viridis Norris (Chlorophyta, Prasinophyceae), Dokl. Nats. Akad. Nauk Ukr., 2005, no. 1, pp. 158–162.

  30. Stepanova, O.A., Boyko, A.L., and Shcherbatenko, I.S., Computational genome analysis of three marine algoviruses, Mikrobiol. Zh., 2013, vol. 75, no. 5, pp. 76–81.

    CAS  Google Scholar 

  31. Stepanova, O.A. and Gaisky, P.V., Dynamics of changes in electric conductivity of marine water under influence of biotic component in experimental conditions, Sist. Kontrolya Okruzh. Sredy, 2018, vol. 31, pp. 48–56.

    Google Scholar 

  32. Stepanova, O.A., Gaisky, P.V., and Sholar, S.A., Influence of viral lysis on some physical parameters of marine water under experiment, Sist. Kontrolya Okruzh. Sredy, 2018, vol. 33, pp. 19–28.

    Google Scholar 

  33. Stepanova, O.A. and Galatonova, O.A., Identification of the species of microalga using an algal virus, in Materialy II vserossiiskoi konferentsii “Vodorosli: problemy taksonomii, ekologii i ispol’zovaniye v monitoringe” (Syktyvkar, 5−9 oktyabrya 2009 g.) (Proc. II All-Russ. Conf. “Algae: Problems of Taxonomy, Ecology and Application in Monitoring”, Syktyvkar, October 5−9, 2009), Syktyvkar: Inst. Biol., Komi Nauchn. Tsentr, Ural. Otd., Ross. Akad. Nauk, 2009, pp. 33–34.

  34. Stepanova, O.A., Klimchuk, D.A., and Novichenko, V.N., First isolation of the Dunaliella viridis Teod. (Chlorophyta) virus from the Black Sea environment, Dokl. Nats. Akad. Nauk Ukr., 2009, no. 11, pp. 165–168.

  35. Stepanova, O.A. and Kuzminova, N.S., Marine fish contamination by algal viruses, Rybn. Khoz. Ukr., 2006, no. 1, pp. 26–27.

  36. Stepanova, O.A. and Stelmakh, L.V., Search and isolation of the new algal virus of algae Tisochrysis lutea from the ecosystem of the bays of Sevastopol (the Crimean region), Ekosistemy, 2017, no. 12(42), pp. 28–34.

  37. Sholar, S.A. and Stepanova, O.A., Isolation of algal viruses from the Black Sea environment near the coast of Sevastopol (2002–2010), in Materialy XIV shkoly-konferentsii molodykh uchenykh “Biologiya vnutrennikh vod” (Borok, 26–30 oktyabrya 2010 g.) (Proc. XIV School Conf. Young Sci. “Biology of Inland Waters”, Borok, October 26–30, 2010), Yaroslavl: Printkhaus, 2010, pp. 183−190.

  38. Sholar, S.A. and Stepanova, O.A., The results of change in the optical properties of the marine environment in a simulation experiment on microprocess—viral lysis during contact of microalgae with algal viruses, in Sbornik materialov XXV Mezhdunarodnoi nauchno-tekhnicheskoi konferentsii “Informatsionnye Sistemy i Tekhnologii2019”, Nizhniy Novgorod, 19 aprelya 2019 g. (Collect. Pap. XXV Int. Sci. Tech. Conf. “Information Systems and Technologies—2019”, Nizhniy Novgorod, April 19, 2019), Nizhniy Novgorod: Nizhegorod. Gos. Tekh. Univ., 2019, pp. 901–907.

  39. Sholar, S.A., Stepanova, O.A., and Stelmakh, L.V., The use of experimental laboratory stand for the study of optical properties of the aquatic medium in the presence of microbiota, Sist. Kontrolya Okruzh. Sredy, 2019, vol. 36, pp. 13–21.

    Google Scholar 

  40. Balch, W.M., Vaughn, M., Jr., Novotny, J.F., et al., Fundamental changes in light scattering associated with infection of marine bacteria by bacteriophage, Limnol. Oceanogr., 2002, no. 47, pp. 1554–1561.

  41. Coy, S.R., Gann, E.R., Pound, H.L., et al., Viruses of eukaryotic algae: diversity, methods for detection, and future directions, Viruses, 2018, vol. 9, no. 10, pp. 487–514.

    Article  Google Scholar 

  42. Henn, M.R., Sullivan, M.B., Stange-Thomann, N., et al., Analysis of high-throughput sequencing and annotation strategies for phage genomes, PLoS One, 2010, vol. 5, no. 2, art. ID e9083. https://doi.org/10.1371/journal.pone.0009083

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  43. IOC, SCOR, and IAPSO, The International Thermodynamic Equation of Seawater2010: Calculation and Use of Thermodynamic Properties, Intergovernmental Oceanographic Commission, Manuals and Guides, no. 56, Paris: UNESCO, 2010.

    Google Scholar 

  44. Manual of Aquatic Viral Ecology, Wilhelm, S.W., Weinbauer, M.G., and Suttle, C.A., Eds., Waco, Texas: Am. Soc. Limnol. Oceanogr., 2010.

    Google Scholar 

  45. Middelboe, M. and Brussaard, C., Marine viruses: key players in marine ecosystems, Viruses, 2017, vol. 9, no. 10, pp. 302–308.

    Article  Google Scholar 

  46. Organelli, E., Claustre, H., Bricaud, A., et al., Bio-optical anomalies in the world’s oceans: an investigation on the diffuse attenuation coefficients for downward irradiance derived from Biogeochemical Argo float measurements, J. Geophys. Res.: Oceans, 2017, vol. 122, no. 5, pp. 3543–3564.

    Article  Google Scholar 

  47. Pagarete, A., Grébert, T., Stepanova, O., et al., Tsv-N1: a novel DNA algal virus that infects Tetraselmis striata, Viruses, 2015, vol. 7, pp. 3937−3953.

    Article  CAS  Google Scholar 

  48. Proposal for SCOR WG to investigate the role of viruses in marine ecosystems, Proc. Sci. Comm. Oceanic Res. (Venice, Italy, Sept. 2004), Baltimore, Md., USA, 2005, vol. 40, annex 4, pp. 66–70.

  49. Shcherbatenko, I.S., Graphical visualization of the biologically significant segments in the sequence sets of the relative plant viruses, Mikrobiol. Zh., 2012, vol. 74, no. 5, pp. 108–115.

    CAS  Google Scholar 

  50. Simis, S.G.H., Tijdens, M., Hoogveld, H.L., et al., Optical changes associated with cyanobacterial bloom termination by viral lysis, J. Plankton Res., 2005, vol. 27, no. 9, pp. 937–949.

    Article  Google Scholar 

  51. Simis, S.G.H., Tijdens, M., Hoogveld, H.L., et al., Optical signatures of the filamentous cyanobacterium Leptolyngbya boryana during mass viral lysis, Limnol. Oceanogr., 2007, no. 52, pp. 184–197.

  52. Stepanova, O.A., Influence of a tetranucleotide, CGCG, on marine algal viruses, Ukr. Bioorg. Acta, 2005, vol. 2, no. 1, pp. 25–27.

    CAS  Google Scholar 

  53. Stepanova, O.A., Heat production of marine algae viruses contact with microseaweed, XIV Conf. ISBC, Sopot, Poland, 2–6 June, 2006, pp. 59−60.

  54. Stepanova, O., Search, Isolation and Study of Black Sea Algal Viruses 2002–2013: New Facts and Hypotheses, Saarbrücken, Germany: Lambert Acad. Publ., 2014.

    Google Scholar 

  55. Stepanova, O.A., Shaida, V.G., and Boyko, A.L., Study of heat production of interaction between DNA and viruses in vitro, in A Year after Johannesburg: Ocean Governance and Sustainable Development: Ocean and CoastsA Glimpse into the Future, Kiev, October 27−30, 2003, pp. 125−126.

  56. Stepanova, O.A., Solovyova, Y.A., and Solovyov, A.V., Results of algae viruses search in human clinical material, Ukr. Bioorg. Acta, 2011, no. 2, pp. 53–56.

  57. Suttle, C.A., Marine viruses – major players in the global ecosystem, Nat. Rev. Microbiol., 2007, no. 5, pp. 801–812.

  58. Uitz, J., Stramski, D., Baudoux, A.C., et al., Variations in the optical properties of a particle suspension associated with viral infection of marine bacteria, Limnol. Oceanogr., 2010, no. 55, pp. 2317–2330.

  59. Viruses of Microorganisms, Poole, UK: Caister Academic Press, 2018.

  60. Wommack, K.E. and Colwell, R.R., Virioplankton: viruses in aquatic ecosystems, Microbiol. Mol. Biol. Rev., 2000, vol. 64, no. 1, pp. 69–114.

    Article  CAS  Google Scholar 

  61. Yolken, R.H., Jones-Brando, L., Dunigan, D.D., et al., Chlorovirus ATCV-1 is part of the human oropharyngeal virome and is associated with changes in cognitive functions in humans and mice, Proc. Natl. Acad. Sci. U. S. A., 2014, vol. 111, no. 45, pp. 16106–16111.

    Article  CAS  Google Scholar 

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Funding

This work was performed in accordance with State assignment and supported under the Institute of Natural and Technical Systems project no. 0012-2019-0003 Development of New Means and Measuring Information Technologies for Study of Natural Waters and the Marine Hydrophysical Institute, Russian Academy of Sciences, project no. 0827-2019-0002.

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The authors declare that they have no conflict of interest. This article does not contain any studies involving animals or human participants performed by any of the authors.

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Stepanova, O.A., Gaisky, P.V. & Sholar, S.A. Materials, Methods, and Experiments in the Study of Black Sea Algal Viruses. Russ J Mar Biol 47, 10–18 (2021). https://doi.org/10.1134/S1063074021010090

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