Skip to main content

Advertisement

Log in

Lightweight pyramid network with spatial attention mechanism for accurate retinal vessel segmentation

  • Original Article
  • Published:
International Journal of Computer Assisted Radiology and Surgery Aims and scope Submit manuscript

Abstract

Purpose

The morphological characteristics of retinal vessels are vital for the early diagnosis of pathological diseases such as diabetes and hypertension. However, the low contrast and complex morphology pose a challenge to automatic retinal vessel segmentation. To extract precise semantic features, more convolution and pooling operations are adopted, but some structural information is potentially ignored.

Methods

In the paper, we propose a novel lightweight pyramid network (LPN) fusing multi-scale features with spatial attention mechanism to preserve the structure information of retinal vessels. The pyramid hierarchy model is constructed to generate multi-scale representations, and its semantic features are strengthened with the introduction of the attention mechanism. The combination of multi-scale features contributes to its accurate prediction.

Results

The LPN is evaluated on benchmark datasets DRIVE, STARE and CHASE, and the results indicate its state-of-the-art performance (e.g., ACC of 97.09\(\%\)/97.49\(\%\)/97.48\(\%\), AUC of 98.79\(\%\)/99.01\(\%\)/98.91\(\%\) on the DRIVE, STARE and CHASE datasets, respectively). The robustness and generalization ability of the LPN are further proved in cross-training experiment.

Conclusion

The visualization experiment reveals the semantic gap between various scales of the pyramid and verifies the effectiveness of the attention mechanism, which provide a potential basis for the pyramid hierarchy model in multi-scale vessel segmentation task. Furthermore, the number of model parameters is greatly reduced.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  1. Wong TY, Klein R, Klein BE, Tielsch JM, Hubbard L, Nieto F (2001) Retinal microvascular abnormalities and their relationship with hypertension, cardiovascular disease, and mortality. Surv phthal 46(1):59–80

    Article  CAS  Google Scholar 

  2. Nguyen TT, Wong TY (2009) Retinal vascular changes and diabetic retinopathy. Current Diabet Rep 9(4):277–283

    Article  Google Scholar 

  3. Figueiredo IN, Moura S, Neves JS, Pinto L, Kumar S, Oliveira CM, Ramos JD (2016) Automated retina identification based on multiscale elastic registration. Comput Biol Med 79:130–143. https://doi.org/10.1016/j.compbiomed.2016.09.019

    Article  PubMed  Google Scholar 

  4. Martínez-Pérez ME, Hughes AD, Stanton AV, Thom SA, Bharath AA, Parker KH (1999) Retinal blood vessel segmentation by means of scale-space analysis and region growing. In: Medical Image Computing and Computer-Assisted Intervention—MICCAI’99, pp 90–97

  5. Al-Diri B, Hunter A, Steel D (2009) An active contour model for segmenting and measuring retinal vessels. IEEE Trans Med Imag 28(9):1488–1497

    Article  Google Scholar 

  6. Mendonca AM, Campilho A (2006) Segmentation of retinal blood vessels by combining the detection of centerlines and morphological reconstruction. IEEE Trans Med Imag 25(9):1200–1213

    Article  Google Scholar 

  7. Lupascu CA, Tegolo D, Trucco E (2010) Fabc: Retinal vessel segmentation using adaboost. IEEE Trans Inf Technol Biomed 14(5):1267–1274

    Article  PubMed  Google Scholar 

  8. Orlando JI, Blaschko M (2014) Learning fully-connected crfs for blood vessel segmentation in retinal images. Med Image Comput Comput Assist Intervent ICCAI 2014:634–641

    Google Scholar 

  9. Liskowski P, Krawiec K (2016) Segmenting retinal blood vessels with deep neural networks. IEEE Trans Med Imag 35(11):2369–2380

    Article  Google Scholar 

  10. Li Q, Feng B, Xie L, Liang P, Zhang H, Wang T (2016) A cross-modality learning approach for vessel segmentation in retinal images. IEEE Trans Med Imag 35(1):109–118

    Article  Google Scholar 

  11. Fu H, Xu Y, Lin S, Kee Wong DW, Liu J (2016) Deepvessel: Retinal vessel segmentation via deep learning and conditional random field. Med Image Comput Comput Assist Intervent ICCAI 2016:132–139

    Google Scholar 

  12. Wu Y, Xia Y, Song Y, Zhang D, Liu D, Zhang C, Cai W (2019) Vessel-net: Retinal vessel segmentation under multi-path supervision. Med Image Comput Comput Assist Intervent ICCAI 2019:264–272

    Google Scholar 

  13. Ronneberger O, Fischer P, Brox T (2015) U-net: convolutional networks for biomedical image segmentation. Med Image Comput Comput Assist Intervent ICCAI 2015:234–241

    Google Scholar 

  14. Zhang S, Fu H, Yan Y, Zhang Y, Wu Q, Yang M, Tan M, Xu Y (2019) Attention guided network for retinal image segmentation. Med Image Comput Comput Assist Intervent ICCAI 2019:797–805

    Google Scholar 

  15. Jin Q, Meng Z, Pham TD, Chen Q, Wei L, Su R (2018) Dunet: A deformable network for retinal vessel segmentation. arXiv:1811.01206v1

  16. Chen L, Papandreou G, Kokkinos I, Murphy K, Yuille AL (2018) Deeplab: semantic image segmentation with deep convolutional nets, atrous convolution, and fully connected CRFS. IEEE Trans Pattern Anal Mach Intell 40(4):834–848. https://doi.org/10.1109/TPAMI.2017.2699184

    Article  PubMed  Google Scholar 

  17. Gu Z, Cheng J, Fu H, Zhou K, Hao H, Zhao Y, Zhang T, Gao S, Liu J (2019) Ce-net: Context encoder network for 2d medical image segmentation. IEEE Trans Med Imag 38(10):2281–2292. https://doi.org/10.1109/TMI.2019.2903562

    Article  Google Scholar 

  18. Wang W, Zhong J, Wu H, Wen Z, Qin J (2020) Rvseg-net: An efficient feature pyramid cascade network for retinal vessel segmentation. In: Medical Image Computing and Computer Assisted Intervention—MICCAI 2020

  19. Liu W, Anguelov D, Erhan D, Szegedy C, Reed S, Fu CY, Berg AC (2016) Ssd: Single shot multibox detector. ECCV 2016:21–37

    Google Scholar 

  20. Lin T, Dollár P, Girshick R, He K, Hariharan B, Belongie S (2017) Feature pyramid networks for object detection. CVPR 2017:936–944

    Google Scholar 

  21. Huang G, Liu Z, Van Der Maaten L, Weinberger KQ (2017) Densely connected convolutional networks. In: CVPR 2017:2261–2269

  22. He K, Zhang X, Ren S, Sun J (2016) Deep residual learning for image recognition. CVPR 2016:770–778

    Google Scholar 

  23. Staal J, Abramoff MD, Niemeijer M, Viergever MA, van Ginneken B (2004) Ridge-based vessel segmentation in color images of the retina. IEEE Trans Med Imag 23(4):501–509

    Article  Google Scholar 

  24. Hoover AD, Kouznetsova V, Goldbaum M (2000) Locating blood vessels in retinal images by piecewise threshold probing of a matched filter response. IEEE Trans Med Imag 19(3):203–210

    Article  CAS  Google Scholar 

  25. Owen CG, Rudnicka AR, Mullen R, Barman SA, Monekosso D, Whincup PH, Ng J, Paterson C (2009) Measuring retinal vessel tortuosity in 10-year-old children: validation of the computer-assisted image analysis of the retina (caiar) program. Invest Ophthal Visual Sci 50(5):2004–2010

    Article  Google Scholar 

  26. Setiawan AW, Mengko TR, Santoso OS, Suksmono AB (2013) Color retinal image enhancement using clahe. In: International Conference on ICT for Smart Society, pp 1–3

  27. Wu Y, Xia Y, Song Y, Zhang Y, Cai W (2018) Multiscale network followed network model for retinal vessel segmentation. Med Image Comput Comput Assist Intervent MICCAI 2018:119–126

    Google Scholar 

  28. Tharwat A (2020) Classification assessment methods. Appl Comput Inf

  29. Yan Z, Yang X, Cheng K (2018) Joint segment-level and pixel-wise losses for deep learning based retinal vessel segmentation. IEEE Trans Biomed Eng 65(9):1912–1923

    Article  PubMed  Google Scholar 

  30. Fraz MM, Remagnino P, Hoppe A, Uyyanonvara B, Rudnicka AR, Owen CG, Barman SA (2012) An ensemble classification-based approach applied to retinal blood vessel segmentation. IEEE Trans Biomed Eng 59(9):2538–2548

    Article  PubMed  Google Scholar 

Download references

Funding

This work was supported by the National Key Scientific Instrument and Equipment Development Projects of China No. 81527802.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Hongwei Du.

Ethics declarations

Conflict of Interest

The authors declare no conflict of interest.

Ethical approval

This article does not contain any studies with human participants performed by any of the authors.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Tan, T., Wang, Z., Du, H. et al. Lightweight pyramid network with spatial attention mechanism for accurate retinal vessel segmentation. Int J CARS 16, 673–682 (2021). https://doi.org/10.1007/s11548-021-02344-x

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s11548-021-02344-x

Keywords

Navigation