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Molecular characterization for food safety assessment of a genetically modified late blight resistant potato: an unusual case

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Abstract

Standard food safety assessments of genetically modified crops require a thorough molecular characterization of the novel DNA as inserted into the plant that is intended for commercialization, as well as a comparison of agronomic and nutritional characteristics of the genetically modified to the non-modified counterpart. These characterization data are used to identify any unintended changes in the inserted DNA or in the modified plant that would require assessment for safety in addition to the assessment of the intended modification. An unusual case of an unintended effect discovered from the molecular characterization of a genetically modified late blight resistant potato developed for growing in Bangladesh and Indonesia is presented here. Not only was a significant portion of the plasmid vector backbone DNA inserted into the plant along with the intended insertion of an R-gene for late blight resistance, but the inserted DNA was split into two separate fragments and inserted into two separate chromosomes. One fragment carries the R-gene and the other fragment carries the NPTII selectable marker gene and the plasmid backbone DNA. The implications of this for the food safety assessment of this late blight resistant potato are considered.

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Acknowledgements

This work was supported by the United States Agency for International Development (USAID) under Award Number AID-OAA-A-15-00056. The authors would like to thank Dr. C. Robin Buell at Michigan State University for advice on MiSeq experiments and Shafiqul Islam of Bangladesh Agricultural Research Institute for assistance in segregation experiments.

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Correspondence to Kelly A. Zarka.

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Zarka, K.A., Hokanson, K. & Douches, D.S. Molecular characterization for food safety assessment of a genetically modified late blight resistant potato: an unusual case. Transgenic Res 30, 169–183 (2021). https://doi.org/10.1007/s11248-021-00241-2

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  • DOI: https://doi.org/10.1007/s11248-021-00241-2

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