Abstract
With the goal of expanding the diversity of tools available for controlling gene expression in cyanobacteria, the T7-RNA polymerase gene expression system from E. coli BL21(DE3) was adapted and systematically engineered for robust function Synechococcus sp. PCC 7002, a fast-growing saltwater strain. Expression of T7-RNA polymerase was controlled via LacI regulation, while functionality was optimized by both further tuning its expression level along with optimizing the translation initiation region of the expressed gene, in this case an enhanced YFP reporter. Under high CO2 conditions, the resulting system displayed a 60-fold dynamic range in expression levels. Furthermore, when maximally induced, T7-RNA polymerase-dependent protein production constituted up to two-thirds of total cellular protein content in Synechococcus sp. PCC 7002. Ultimately, however, this came at the cost of 40% reductions in both biomass and pigmentation levels. Taken together, the developed T7-RNA polymerase gene expression system is effective for controlling and achieving high-level expression of heterologous genes in Synechococcus sp. PCC 7002, making it a valuable tool for cyanobacterial research.
Key Points
• Promoter driving T7-RNA polymerase was optimized.
• Up to 60-fold dynamic range in expression, depending on CO 2 conditions.
• Two-thirds of total protein is T7-RNA polymerase dependent.
Similar content being viewed by others
Data availability
All data generated or analyzed during this study are included in this published article and its supplementary information files.
References
Angermayr SA, Gorchs Rovira A, Hellingwerf KJ (2015) Metabolic engineering of cyanobacteria for the synthesis of commodity products. Trends Biotechnol 33:352–361
Azevedo R, Lopes JL, de Souza MM, Quirino BF, Cancado LJ, Marins LF (2019) Synechococcus elongatus as a model of photosynthetic bioreactor for expression of recombinant beta-glucosidases. Biotechnol Biofuels 12:174
Begemann MB, Zess EK, Walters EM, Schmitt EF, Markley AL, Pfleger BF (2013) An organic acid based counter selection system for cyanobacteria. PLoS One 8:e76594
Berla BM, Saha R, Immethun CM, Maranas CD, Moon TS, Pakrasi HB (2013) Synthetic biology of cyanobacteria: unique challenges and opportunities. Front Microbiol 4:246
Clark RL, McGinley LL, Purdy HM, Korosh TC, Reed JL, Root TW, Pfleger BF (2018) Light-optimized growth of cyanobacterial cultures: growth phases and productivity of biomass and secreted molecules in light-limited batch growth. Metab Eng 47:230–242
Dong H, Nilsson L, Kurland CG (1995) Gratuitous overexpression of genes in Escherichia coli leads to growth inhibition and ribosome destruction. J Bacteriol 177:1497–1504
Farrokh P, Sheikhpour M, Kasaeian A, Asadi H, Bavandi R (2019) Cyanobacteria as an eco-friendly resource for biofuel production: a critical review. Biotechnol Prog 35:e2835
Gibson DG, Young L, Chuang RY, Venter JC, Hutchison CA 3rd, Smith HO (2009) Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods 6:343–345
Gordon GC, Korosh TC, Cameron JC, Markley AL, Begemann MB, Pfleger BF (2016) CRISPR interference as a titratable, trans-acting regulatory tool for metabolic engineering in the cyanobacterium Synechococcus sp. strain PCC 7002. Metab Eng 38:170–179
Gordon GC, Cameron JC, Pfleger BF (2018) Distinct and redundant functions of three homologs of RNase III in the cyanobacterium Synechococcus sp. strain PCC 7002. Nucleic Acids Res 46:1984–1997
Griese M, Lange C, Soppa J (2011) Ploidy in cyanobacteria. FEMS Microbiol Lett 323:124–131
Hui S, Silverman JM, Chen SS, Erickson DW, Basan M, Wang J, Hwa T, Williamson JR (2015) Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria. Mol Syst Biol 11:784
Jin H, Lindblad P, Bhaya D (2019) Building an inducible T7 RNA Polymerase/T7 promoter circuit in Synechocystis sp. PCC6803. ACS Synth Biol 8:655–660
Kelly CL, Taylor GM, Hitchcock A, Torres-Mendez A, Heap JT (2018) A rhamnose-inducible system for precise and temporal control of gene expression in cyanobacteria. ACS Synth Biol 7:1056–1066
Kim WJ, Lee SM, Um Y, Sim SJ, Woo HM (2017) Development of SyneBrick Vectors as a synthetic biology platform for gene expression in Synechococcus elongatus PCC 7942. Front Plant Sci 8:293
Korosh TC, Markley AL, Clark RL, McGinley LL, McMahon KD, Pfleger BF (2017) Engineering photosynthetic production of L-lysine. Metab Eng 44:273–283
Korosh TC, Dutcher A, Pfleger BF, McMahon KD (2018) Inhibition of cyanobacterial growth on a municipal wastewater sidestream is impacted by temperature. mSphere 3. https://doi.org/10.1128/mSphere.00538-17
Kortmann M, Kuhl V, Klaffl S, Bott M (2015) A chromosomally encoded T7 RNA polymerase-dependent gene expression system for Corynebacterium glutamicum: construction and comparative evaluation at the single-cell level. Microb Biotechnol 8:253–265
Kurland CG, Dong H (1996) Bacterial growth inhibition by overproduction of protein. Mol Microbiol 21:1–4
Ludwig M, Bryant DA (2012) Synechococcus sp. strain PCC 7002 transcriptome: acclimation to temperature, salinity, oxidative stress, and mixotrophic growth conditions. Front Microbiol 3:354
Markley AL, Begemann MB, Clarke RE, Gordon GC, Pfleger BF (2015) Synthetic biology toolbox for controlling gene expression in the cyanobacterium Synechococcus sp. strain PCC 7002. ACS Synth Biol 4:595–603
Myers J, Graham JR, Wang RT (1980) Light harvesting in Anacystis nidulans studied in pigment mutants. Plant Physiol 66:1144–1149
Ou B, Garcia C, Wang Y, Zhang W, Zhu G (2018) Techniques for chromosomal integration and expression optimization in Escherichia coli. Biotechnol Bioeng 115:2467–2478
Salis HM (2011) The ribosome binding site calculator. Methods Enzymol 498:19–42
Stevens SE Jr, Patterson COP, Myers J (1973) The production of hydrogen peroxide by blue-green algae: a survey. J Phycol 9:427–430
Studier FW, Moffatt BA (1986) Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J Mol Biol 189:113–130
Studier FW, Rosenberg AH, Dunn JJ, Dubendorff JW (1990) Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol 185:60–89
Xu Y, Alvey RM, Byrne PO, Graham JE, Shen G, Bryant DA (2011) Expression of genes in cyanobacteria: adaptation of endogenous plasmids as platforms for high-level gene expression in Synechococcus sp. PCC 7002. Methods Mol Biol 684:273–293
Zess EK, Begemann MB, Pfleger BF (2016) Construction of new synthetic biology tools for the control of gene expression in the cyanobacterium Synechococcus sp. strain PCC 7002. Biotechnol Bioeng 113:424–432
Funding
CMJ, TCK, and BFP were supported by the US National Science Foundation (EFRI-1240268).
Author information
Authors and Affiliations
Contributions
C.M.J. conceived the original idea, designed and carried out experiments, and wrote and edited the manuscript. T.K. provided technical support. D.R.N. provided critical analysis and resources and wrote and edited the manuscript. B.F.P. conceived experiments, provided critical analysis and resources, and wrote and edited the manuscript.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare no competing interests.
Statement of informed consent, human/animal rights
No conflicts, informed consent, or human or animal rights are applicable to this study.
Additional information
Publisher’s note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary Information
ESM 1
(PDF 195 kb)
Rights and permissions
About this article
Cite this article
Jones, C.M., Korosh, T.C., Nielsen, D.R. et al. Optimization of a T7-RNA polymerase system in Synechococcus sp. PCC 7002 mirrors the protein overproduction phenotype from E. coli BL21(DE3). Appl Microbiol Biotechnol 105, 1147–1158 (2021). https://doi.org/10.1007/s00253-020-11085-x
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00253-020-11085-x