Abstract
Paragonimiasis is a foodborne trematode infection that affects 23 million people, mainly in Asia. Lung fluke infections lead frequently to chronic cough with fever and hemoptysis, and are often confused with lung cancer or tuberculosis. Paragonimiasis can be efficiently treated with praziquantel, but diagnosis is often delayed, and patients are frequently treated for other conditions. To improve diagnosis, we selected five Paragonimus kellicotti proteins based on transcriptional abundance, recognition by patient sera, and conservation among trematodes and expressed them as His-fusion proteins in Escherichia coli. Sequences for these proteins have 76–99% identity with amino acid sequences for orthologs in the genomes of Paragonimus westermani, Paragonimus heterotremus, and Paragonimus miyazakii. Immunohistology studies showed that antibodies raised to four recombinant proteins bound to the tegument of adult P. kellicotti worms, at the parasite host interface. Only a known egg antigen was absent from the tegument but present in developing and mature eggs. We evaluated the diagnostic potential of these antigens by Western blot with sera from patients with paragonimiasis (from MO and the Philippines), fascioliasis, and schistosomiasis, and with sera from healthy North American controls. Two recombinant proteins (a cysteine protease and a myoglobin) showed the highest sensitivity and specificity as diagnostic antigens, and they detected antibodies in sera from paragonimiasis patients with early or mature infections. In contrast, antibodies to egg yolk ferritin appeared to be specific marker for patients with adult fluke infections that produce eggs. Our study has identified and localized antigens that are promising for serodiagnosis of human paragonimiasis.
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Introduction
Foodborne trematode (FBT) infections are important neglected tropical diseases (NTDs) that affect about 56 million people and cause significant morbidity (Furst et al. 2012). Among FBT infections, lung flukes of the genus Paragonimus are arguably the most important group with an estimated 23 million human infections (Keiser and Utzinger 2009). Paragonimus species are widely distributed in animals in Asia, Africa, and the Americas, but the infection risk for humans depends largely on whether humans ingest raw or undercooked crustaceans that act as intermediate hosts. For Paragonimus westermani, ingestion of raw meat from mammalian paratenic hosts provides an additional route of infection (Blair 2014). Human Paragonimus infection can be efficiently treated with a short course of praziquantel, but diagnosis is challenging, because infected people are often misdiagnosed and treated for pneumonia, tuberculosis, or cancer (Fischer and Weil 2015).
Paragonimus kellicotti is the only Paragonimus species endemic in the USA. Human P. kellicotti infections are rare, but in recent years, a number of serious cases have been reported from MO and adjacent states (Bahr et al. 2017; Lane et al. 2012). While the symptoms usually start 2 to 16 weeks after crayfish ingestion, accurate diagnosis is often delayed for a period of weeks to many months after the onset of symptoms (Lane et al. 2012). In order to improve the serological diagnosis of P. kellicotti infection, we developed a small animal infection model to provide adult worms for antigen production. The native adult worm antigen was used to develop a Western blot assay that was sensitive and specific for paragonimiasis (Fischer et al. 2011b, 2013). Unfortunately, the native parasite antigen is not widely available, and recombinant antigen-based antibody tests are preferable in terms of feasibility and reproducibility. Therefore, we used a systems biology approach that included transcriptome sequencing followed by assembly and annotation, immunoprecipitation using patients’ sera, and proteomics to identify candidate antigens for serodiagnosis of paragonimiasis (McNulty et al. 2014). In this study, we build on our progress by further characterizing five of these antigens and evaluate their potential value for diagnosis of P. kellicotti and P. westermani infections. These included a cysteine protease (Pk00394_txpt2; MK050848), a cystatin (Pk45107-txpt2; MK050849), a myoglobin (Pk34178-txpt1; MK050847), a microbial defense protein (Pk39524_txpt1; MK050850), and an egg yolk ferritin (Pk48313-txpt; MK050851) (McNulty et al. 2014). Four of these serodiagnostic antigen candidates were among the top 25 immunoreactive adult P. kellicotti proteins, show relatively little conservation in other helminth genera, and represent distinct protein families (McNulty et al. 2014). The egg yolk ferritin was a highly abundant protein in adult worm extract and was target of a previous immunoassay for P. westermani (Kim et al. 2002a, b). So far, only few Paragonimus proteins have been recombinantly expressed and evaluated for their serodiagnostic potential. Among these are, apart from the egg yolk ferritin, different cysteine proteases of P. westermani, Paragonimus pseudoheterotremus, and Paragonimus skrjabini (Kim et al. 2000; Park et al. 2001; Yang et al. 2004; Yoonuan et al. 2016; Yu et al. 2017). Paragonimus species contain an expanded number of cysteine protease family members, and many of them are secreted and highly immunogenic, making them promising diagnostic antigens (Blair et al. 2016).
We cloned and expressed the proteins in Escherichia coli, purified the recombinant proteins, and tested their serodiagnostic potential with sera from patients infected with P. kellicotti or P. westermani. As negative controls, we used sera of patients infected with or without other trematode infections. In order to better characterize these target protein, we produced polyclonal mouse antibodies using recombinant protein and localized the antigens in adult P. kellicotti flukes.
Material and Methods
Parasite material
Adult stage P. kellicotti parasites were obtained as described previously from experimentally infected Mongolian gerbils, Meriones unguiculatus (Fischer et al. 2011b). The use of gerbils for P. kellicotti infections was approved by the Washington University Animal Studies Committee and followed the IACUC guidelines. Adult worms (45 days p.i.) were fixed in 4% buffered formalin for immunohistology studies or stored at − 80 °C for RNA extraction.
Patient sera
The study protocol was approved by the Human Research Protection Office at Washington University School of Medicine. This study included samples that were tested in our previous Western blot study with native P. kellicotti adult worm antigen (Fischer et al. 2013). Samples from patients with proven P. kellicotti infection were exclusively from MO, while samples with proven P. westermani infection (kindly provided by Dr. P. Wilkinson at the US Centers for Disease Control and Prevention) were from the Philippines.
Protein expression and purification
Total RNA was isolated from six adult P. kellicotti using the PureLink RNA mini kit (Thermo Fisher Scientific, Waltham MA, USA), and cDNA was synthesized using the 1 Script kit (BioRad, Hercules, CA, USA) according to the manufacturer’s instructions. Diagnostic candidates were amplified with 50 ng of cDNA template and Platinum Pfx DNA polymerase (Thermo Fisher Scientific), and 20 pmol of primers (Supplemental Table S1). PCR products were Sanger sequenced and sequences of interest were submitted to GenBank
Antigen sequence analysis
The Sanger sequencing of the cDNA clones and the subsequent translation of the open reading frame generated protein sequences for comparative analysis (AZZ10059–AZZ10063). These sequences were used to identify orthologous sequences in other Paragonimus species (Rosa et al. 2020). The closest orthologs for P. kellicotti antigens in other Paragonimus species were retrieved by BLASTP against complete deduced proteomes that were generated by the Paragonimus genome sequencing project (Martin et al. 2015). Sequences are available at GenBank under BioProject id PRJNA284523 (P. heterotremus), PRJNA245325 (P. miyazakii), and PRJNA219632 (P. westermani). In addition, we ran a blast search of the P. kellicotti Cp-6 and Myo-1 against the orthologous groups from other FBTs and identified the top BLASTP hit. For Opisthorchis viverrini, no significant hit was obtained for the orthologous groups and we ran BLASTP against the GenBank NR database.
Production and purification of recombinant P. kellicotti proteins
PCR products were ligated into the directional pET100/D-TOPO His-tagged expression vector (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions, and proteins were expressed using BL21 (DE3) E. coli cells (Sigma, St. Louis, MO, USA). Recombinant proteins were purified with His-Select Cobalt Affinity Get h8162 resin (Sigma).
Western blot
Western blot antibody assays were performed as previously described with 10 μg of antigen protein per centimeter of nitrocellulose (NC) membrane. Test samples included sera from individuals infected with P. kellicotti, P. westermani, Schistosoma mansoni, or other helminths, and with sera from uninfected North Americans (Fischer et al. 2013). Individual 3 mm nitrocellulose (Invitrogen) strips were incubated with primary antibodies in mouse or human sera diluted 1:100 in PBS/Tween for 2 h. Strips were washed in PBS/Tween three times and incubated in alkaline phosphatase-conjugated anti-IgG or anti-IgG4 secondary antibodies (SouthernBiotech, Birmingham, AL, USA) diluted in PBS/Tween for 1 h at room temperature. After washing, antibody binding was revealed by incubating the NC strips in NBT/BCIP (Fischer et al. 2013).
Production of antibodies to recombinant proteins
Polyclonal antibodies were raised in BALB/c mice by s.c. immunization with 20 μg of recombinant proteins (rCP-6, rMYO-1, rCYS-2, rMDP, and rEYF) in complete Freund’s adjuvant (1st immunization) or in incomplete Freund’s adjuvant (boosting injections). Sera were stored at − 20 °C until use. These antibodies served as positive controls for Western blot assays to verify that target antigens were present on NC membranes.
Immunolocalization of recombinant antigens
Formalin-fixed, adult P. kellicotti flukes were embedded in paraffin and sectioned at 5 μm. Sections were stained with hematoxylin and eosin to delineate general morphology. Two blocks with three flukes per block were sectioned, stained, and analyzed. The alkaline phosphatase-anti-alkaline phosphatase (APAAP) technique was used as previously described for immunostaining (Fischer et al. 2011a, 2017). Briefly, the unstained tissue sections were rehydrated and incubated in 10% bovine serum albumin (Sigma) for 30 min to reduce background staining. Sections were then incubated with murine antibodies to P. kellicotti proteins at dilutions of 1:50 to 1:200 in phosphate-buffered saline containing 0.1% Triton-X and 0.1% bovine serum albumin. A dilution of 1:100 of the primary antibodies resulted in the best signal to noise ratio and was used for all further immunostainings. Polyclonal rabbit anti-mouse IgG (Dako, Carpinteria CA, USA) was applied as the secondary antibody, followed by incubation with APAAP (1:40, Sigma). The chromogen Fast Red TR salt (Sigma) was used as the substrate, and hematoxylin (Merck, Darmstadt, Germany) served as the counter-stain. The slides were examined with an Olympus-BX40 microscope (Olympus, Tokyo, Japan) and photographed with an Olympus DP70 digital camera.
For fluorescence microscopy, Alexa Fluor 488 anti-mouse IgG (Invitrogen, green fluorescence) was used as the secondary antibody, and wheat germ agglutinin 633 (200 μg/ml, Invitrogen, red fluorescence), and DAPI (Prolong Antifade with DAPI, Molecular Probes by Life Technologies, Carlsbad, CA, USA, blue fluorescence) were used to label membranes and double-stranded DNA, respectively (Fischer et al. 2017; McNulty et al. 2017). Sections were examined with a wide field fluorescence microscope (WFFM, Zeiss Axios Imager Upright Fluorescence Microscope) with plan-apochromat × 100 oil, × 63, or × 40 objectives.
Results
Expression of immunoreactive proteins
cDNAs of five P. kellicotti immunoreactive antigens were chosen for expression: a cysteine proteinase (CP-6), a myglobin (MYO-1), a cystatin (CYS-2), a microbial defense protein (MDP), and an egg yolk ferritin (EYF) (Table 1). The recombinant proteins had the expected molecular masses (Fig. 1). However, rMYO-1 showed a more diffuse band, which could be caused by the presence of a second, slightly smaller protein, or partial degradation. The antibody directed against the His-tag recognized rEYF at approximately 24 kDa and a second band at approximately 48 kDa indicative of incomplete reduction and detection of a dimer. When we tested polyclonal antibodies raised against the recombinant proteins by Western blot with crude adult worm extract as antigen, we obtained similar results for CP-6, CYS-2, MDP, and EYF with lower kDa values (consistent with the absence of the His-tag in the native proteins). However, antibodies raised to rMYO-1 did not react with antigens in the worm extract (Fig. 1b), but the antibodies bound to rMYO protein at the expected size (Fig. 1c).
Conservation of selected immunoreactive proteins
We compared the amino acid sequences of the five selected P. kellicotti proteins with orthologous proteins from the P. westermani, P.miyazakii, P. heterotremus genomes (Martin et al. 2018). Close orthologs of the P. kellicotti sequences for CP-6, MYO-1, CYS-2, MDP, and EYF were identified in the genomes of all three species with amino acid identities that ranged between 79 and 99% (Table 2). These five proteins were all highly conserved between the four species, and there were only minor differences. MDP was the most highly conserved protein with identities between 96 and 99%, while CP-6 was the least conserved protein with identities between 79 and 86%. Still, this high degree of conservation of the selected serodiagnostic antigen candidates may facilitate the development of a pan-Paragonimus serodiagnostic antigen. This is supported by the fact that the selected antigen candidates are conserved not only among Asian, but also North American species.
Immunolocalization of candidate diagnostic proteins in adult P. kellicotti
All five antigens showed distinct localization patterns (Fig. 2). Pre-immune murine sera did not label tegument, ova (Fig. 2e, f), or other structures except from a part of the intestine. The inner lining of the intestine of P. kellicotti was labeled with all immune and negative control sera. This non-specific staining is probably because of endogenous alkaline phosphatase that is detected by the anti-alkaline phosphatase antibody component in the APAAP localization protocol (Fig. 2a, b). However, the distinct non-specific labeling of parts of the intestine was easily differentiated from specific antibody staining of the intestine (Fig. 2c, d). In agreement with this observation, no unspecific labeling was observed when Alexa Fluor 488 anti-mouse IgG was used as secondary antibody was used that does not contain an anti-alkaline phosphatase antibody like the APAAP complex.
CP-6 is mainly localized in the tegument at the parasite-host interface (Fig. 2g). Some staining was detected in the vitelline follicles, and strong staining was seen in the full thickness of the intestine (not limited to the inner lining) (Figs. 2c, 4d–f). Staining was also present in the oral and ventral suckers (Figs. 3c, d; 4a–c). CYS-2 was localized to the tegument, vitelline follicles, and intrauterine eggs (Fig. 2i, j), while antibodies to MYO-1 bound strongly to the tegument. Weaker MYO-1 staining was observed in the parenchyma and in intrauterine eggs (Fig. 2k, l).
Staining for MDP was widespread and it appears that this protein is abundant in many worm tissues (see Supplemental Figure 1). MDP staining was especially intense in the tegument, inner parts of the suckers, the intestine, and the parenchyma (Figs. 2d, m; 3e, f; 5). Staining was also present in the testis, ovaries, and the vitelline follicles (Fig. 4). Analysis of total adult P. kellicotti extract by Western blot using this antibody supports the finding that this is an abundant protein and that the antibody detects specifically only a single protein band at around 8.4 kDa.
Localization studies showed that EYF was abundant in the vitelline follicles and intrauterine eggs (Fig. 2o, p), but not in other tissues of P. kellicotti. These results show that immunolocalization is not only helpful for a better characterization of proteins of interest, but it also helps to experimentally identify proteins that are secreted and/or localized at the parasite-host interface, and maybe exposed to the human immune system and, therefore, may represent preferred targets for serodiagnostics.
Evaluation of recombinant proteins as serodiagnostic antigens
The diagnostic potential of the five antigen candidates was assessed by Western blot with a panel of sera from 17 subjects with proven Paragonimus infections (13 P. kellicotti cases from MO and 4 P. westermani cases from the Philippines) and with sera from Paragonimus-negative controls with or without other trematode infections (Table 3). In this pilot evaluation, CP-6 and MYO-1 had a sensitivity of 100% with sera from paragonimiasis patients vs sensitivities of 76, 41, and 24% for MDP, EYF, and CYS-2, respectively. All clinical cases had antibodies reactive to antigens present in total adult worm extract. Some of the infected subjects had detectable eggs in sputum or stool. In total, 7 P. kellicotti and 4 P. westermani infected subjects had detectable eggs, and of those, 6 P. kellicotti and 1 P. westermani samples had antibodies reactive with recombinant EYF by Western blot. None of the 28 control sera from persons with no infection or with infections with other helminth parasites had antibodies to Myo-1. MDP, EYF, and CYS-2 also appeared to have good specificity, but fewer negative control sera were tested with these antigens because of their sub-optimal sensitivity.
All sera from paragonimiasis patients contained IgG antibodies to CP-6, but six control sera also had antibodies that reactivated with the antigen (Fig. 6a). Specificity improved to 100% with no loss of sensitivity when we used anti-human IgG4 as the secondary antibody in CP-6 (Table 3; Fig. 6b).
We performed CP-6 IgG4 Western blots with paired serum samples from four patients with P. kellicotti infections that were collected before and after they were successfully treated with praziquantel. Treatment success was defined as resolution of clinical symptoms associated with infection. One patient’s sera had similar band intensities before and 53 days post-treatment. However, band intensities decreased 224, 42, and 59 days after treatment in three other patients (Fig. 6c). These results suggest that although IgG4 antibody titers to CP-6 tend to decrease after successful treatment, they sometimes remain detectable for some months.
Discussion
Human paragonimiasis in an important FBT infection, and it was estimated that in 2017, this group of NTDs is responsible for 1,870,700 years lived with disabilities (YLD) (GBD 2017 Disease and Injury Incidence and Prevalence Collaborators 2018). Among the FBT infections, about 50% of the YLD are assumed to be caused by paragonimiasis (Furst et al. 2012). However, these estimates do not include infections in Africa or North America, and because of underdiagnosis and underreporting, the global number of infections is likely to be higher. Furthermore, pathogenicity and the ascribed disability weight for paragonimiasis is species-dependent and may also be an underestimate (Feng et al. 2018). Therefore, improved diagnosis for paragonimiasis would be important not only for clinical care, but also for a more accurate estimation of its public health importance.
We amplified, expressed, characterized, and evaluated five recombinant P. kellicotti proteins for their potential as serodiagnostic antigens. Two proteins, CYP-6 and MYO-1, show great potential as serodiagnostic antigens for paragonimiasis. Immunolocalization studies showed that four of the five candidate diagnostic antigens were present in the tegument of adult worms, at the host-parasite interface. Protein EYF was only detected in the vitellaria and the eggs, and it is possible that antibodies to this protein only develop after worms have matured to adulthood with egg production.
Few proteins have been localized in adult Paragonimus flukes before, and our thorough immunolocalization of five proteins with antibodies raised against recombinant proteins has provided significant new information. MYO-1 was previously localized in P. westermani, and our data confirm those findings with strong staining throughout the parenchymal tissue and the tegument, and absent or weak staining of the embryonic cells inside the eggs (de Guzman et al. 2007). There are many different cysteine proteases in Paragonimus, and their tissue localization appears to vary. Prior studies have localized them in the intestinal epithelium (Choi et al. 2006), esophagus (Yoonuan et al. 2016), and the tegument in the anterior part of the fluke including the oral sucker (Na et al. 2006).
Based on recently generated genomic information, all five of the proteins selected for this study showed a high degree of conservation between four Paragonimus species (three from Asia and one from North America). Although MYO-1 of P. kellicotti is 90–95% identical to the orthologs in the genomes of the other three Paragonimus species, it is only 53% and 58% identical to orthologs in the genomes of the related trematodes Clonorchis sinensis and O. viverrini, respectively (Supplemental Table S2) (Wang et al. 2011; Young et al. 2014). Similarly, CP-6 of P. kellicotti is 79–86% identical to orthologs in the genomes of the other three Paragonimus species, but only 49% and 55% identical to the closest orthologs in the genomes of the related trematodes C. sinensis and O. viverrini, respectively (Supplemental Table S2). Even lower degrees of similarities were observed for other trematode species such as Fasciola gigantica, Fasciola hepatica, and Schistosoma mansoni. Therefore, the relatively high genus-specific conservation in Paragonimus may facilitate the development of pan-Paragonimus serology tests.
Few Paragonimus proteins have been evaluated as potential serodiagnostic antigens, and most have been evaluated with sera from persons infected with a single Paragonimus species. The EYF antigen of P. westermani was reported to have high specificity (Kim et al. 2002b). However, in experimentally infected cats, it took 13 weeks following infection before antibodies were detectable by Western blot. Our study confirmed the high specificity of this antigen, but showed unsatisfactory sensitivity, especially for sera from persons with early infections. Myoglobins are highly abundant proteins in adult P. westermani and P. kellicotti (de Guzman et al. 2007; McNulty et al. 2014), but they have not been previously studied as diagnostic antigens for paragonimiasis. While cystatins have not been tested for their direct serodiagnostic potential, a cystatin capture assay has been used to capture cysteine proteinases as diagnostic antigens (Ikeda 1998).
Cysteine proteases have been suggested as targets for serodiagnosis of paragonimiasis (Blair et al. 2016). Cysteine protease fractions have been partially isolated from excretory/secretory products from P. westermani, and this antigen preparation showed increased specificity compared to a total worm extract (Ikeda et al. 1996). Paragonimus species have many cysteine proteases, and only a few of them have been examined as diagnostic antigens. For example, eleven cathepsin F family cysteine proteinases of P. westermani were reported to have diagnostic sensitivities that ranged between 38.4 and 84.5% with specificities above 87% (Ahn et al. 2015). We have previously reported that, although cysteine proteases are not among the most abundant proteins in adult P. kellicotti worms, three of them are among the 25 most immunoreactive proteins in adult worm extracts. Indeed, CP-6 was the most abundantly detected immunoreactive protein based on spectral counts (McNulty et al. 2014). The present study showed that a Western blot for IgG4 antibodies to P. kellicotti CP-6 had high sensitivity and specificity, but the parallel IgG assay had low specificity. A previous study with P. westermani CP-6 (Western blot for total IgG) reported a sensitivity of 77.5% and a specificity of 96.7% (Ahn et al. 2015).
Previous studies showed that Western blot assays with crude P. westermani or P. kellicotti adult worm extracts can be useful for serodiagnosis of paragonimiasis (Fischer et al. 2013; Slemenda et al. 1988). The present study shows that P. kellicotti rCP-6 and rMYO-1 can be used in place of native parasite antigen extracts. This may help to standardize the serological diagnosis of paragonimiasis and make testing more widely available. Recombinant CYP-6 and MYO-1 are very promising as serodiagnostic antigens that appear to have excellent sensitivity and specificity when IgG4 (CP-6) or total IgG (MYO-1) antibodies are detected. However, this pilot evaluation only included a limited panel of samples, and larger numbers of samples from different endemic areas will need to be tested to fully evaluate the diagnostic potential of these antigens.
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Acknowledgments
The authors would like to thank Drs. Scott Folk (St. Joseph, Missouri), Patricia Wilkins (CDC), and physicians at Washington University School of Medicine for providing sera of individuals with and without proven Paragonimus infection.
Funding
The study was supported by a grant from the Barnes-Jewish Hospital Foundation. The Paragonimus genomes project is supported by the National Institute of Health.
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Parasite material was produced according to international, national and institutional guidelines. The use of de-identified patients sera for the development of serodiagnostics for helminth parasites was in agreement with the Institutional Review Board of the Washington University School of Medicine in St. Louis.
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Supplemental Fig. S1.
Overview of immunohistological localization of MDP in adult P. kellicotti flukes using APAAP. Intense staining is seen in most parts of the fluke with exception of the muscles and eggs. Os, oral sucker; vs, ventral sucker; vf, vitelline follicle; p, parenchyma; ut, uterus, te, testis. Scale bar 1 mm. (PNG 3929 kb)
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Curtis, K.C., Fischer, K., Choi, YJ. et al. Characterization and localization of antigens for serodiagnosis of human paragonimiasis. Parasitol Res 120, 535–545 (2021). https://doi.org/10.1007/s00436-020-06990-z
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DOI: https://doi.org/10.1007/s00436-020-06990-z