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Fungal diversity and its mechanism of community shaping in the milieu of sanitary landfill

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Abstract

Land filling is the main method to dispose municipal solid waste in China. During the decomposition of organic waste in landfills, fungi play an important role in organic carbon degradation and nitrogen cycling. However, fungal composition and potential functions in landfill have not yet been characterized. In this study, refuse and leachate samples with different areas and depths were taken from a large sanitary landfill in Beijing to identify fungal communities in landfills. In high-throughput sequencing of ITS region, 474 operational taxonomic units (OTUs) were obtained from landfill samples with a cutoff level of 3% and a sequencing depth of 19962. The results indicates that Ascomycota, with the average relative abundance of 84.9%, was the predominant phylum in landfill fungal communities. At the genus level, Family Hypocreaceae unclassified (15.7%), Fusarium (9.9%) and Aspergillus (8.3%) were the most abundant fungi found in the landfill and most of them are of saprotrophic lifestyle, which plays a big role in nutrient cycling in ecosystem. Fungi existed both in landfilled refuse and leachate while both the richness and evenness of fungal communities were higher in the former. In addition, fungal communities in landfilled refuse presented geographic variances, which could be partly attributed to physical habitat properties (pH, dissolved organic carbon, volatile solid, NH4+, NO2 and NO3), while NO3 was considered the most significant factor (p < 0.05) in shaping fungal community.

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References

  • Baldrian P, Kolarik M, Stursova M, Kopecky J, Valaskova V, Vetrovsky T, Zifcakova L, Snajdr J, Ridl J, Vlcek C, Voriskova J (2012). Active and total microbial communities in forest soil are largely different and highly stratified during decomposition. ISME Journal, 6(2): 248–258

    Article  CAS  Google Scholar 

  • Bolyard S C, Reinhart D R (2016). Application of landfill treatment approaches for stabilization of municipal solid waste. Waste Management (New York, N.Y.), 55: 22–30

    Article  CAS  Google Scholar 

  • Braker G, Conrad R (2011). Diversity, structure, and size of N2O-producing microbial communities in soils: What matters for their functioning? Advances in Applied Microbiology, 75: 33–70

    Article  CAS  Google Scholar 

  • Chao A (1984). Nonparametric estimation of the number of classes in a population. Scandinavian Journal of Statistics, 11(4): 265–270

    Google Scholar 

  • Chen H, Yu F, Shi W (2016). Detection of N2O-producing fungi in environment using nitrite reductase gene (nirK)-targeting primers. Fungal Biology, 120(12): 1479–1492

    Article  CAS  Google Scholar 

  • Dou K, Gao J, Zhang C, Yang H, Jiang X, Li J, Li Y, Wang W, Xian H, Li S, Liu Y, Hu J, Chen J (2019). Trichoderma biodiversity in major ecological systems of China. Journal of Microbiology (Seoul, Korea), 57(8): 668–675

    Google Scholar 

  • EPM (Ministry of Environmental and Protection of the People’s Republic of China) (2012). Soil-Determination of ammonium, nitrite and nitrate by extraction with potassium chloride solution-spectrophotometric methods. HJ 634–2012. Beijing: China Environmental Science Press (in Chinese)

    Google Scholar 

  • Farkas C, Rezessy-Szabo J M, Gupta V K, Truong D H, Friedrich L, Felfoldi J, Nguyen Q D (2019). Microbial saccharification of wheat bran for bioethanol fermentation. Journal of Cleaner Production, 240: 118269

    Article  CAS  Google Scholar 

  • Fierer N, Liu Z, Rodriguez-Hernandez M, Knight R, Henn M, Hernandez M T (2008). Short-term temporal variability in airborne bacterial and fungal populations. Applied and Environmental Microbiology, 74(1): 200–207

    Article  CAS  Google Scholar 

  • Hayatsu M, Tago K, Saito M (2008). Various players in the nitrogen cycle: Diversity and functions of the microorganisms involved in nitrification and denitrification. Soil Science and Plant Nutrition, 54(1): 33–45

    Article  CAS  Google Scholar 

  • Li Y, Chapman S J, Nicol G W, Yao H (2018). Nitrification and nitrifiers in acidic soils. Soil Biology & Biochemistry, 116: 290–301

    Article  CAS  Google Scholar 

  • Liu R, Suter H, He J, Hayden H, Chen D (2015). Influence of temperature and moisture on the relative contributions of heterotrophic and autotrophic nitrification to gross nitrification in an acid cropping soil. Journal of Soils and Sediments, 15(11): 2304–2309

    Article  CAS  Google Scholar 

  • Liu S, Wang H, Tian P, Yao X, Sun H, Wang Q, Delgado-Baquerizo M (2020). Decoupled diversity patterns in bacteria and fungi across continental forest ecosystems. Soil Biology & Biochemistry, 144: 107763

    Article  CAS  Google Scholar 

  • Lockhart R J, Van Dyke M I, Beadle I R, Humphreys P, McCarthy A J (2006). Molecular biological detection of anaerobic gut fungi (Neocallimastigales) from landfill sites. Applied and Environmental Microbiology, 72(8): 5659–5661

    Article  CAS  Google Scholar 

  • Maeda K, Toyoda S, Philippot L, Hattori S, Nakajima K, Ito Y, Yoshida N (2017). Relative contribution of nirK-and nirS-bacterial denitrifiers as well as fungal denitrifiers to nitrous oxide production from dairy manure compost. Environmental Science & Technology, 51(24): 14083–14091

    Article  CAS  Google Scholar 

  • Moore-Kucera J, Cox S B, Peyron M, Bailes G, Kinloch K, Karich K, Miles C, Inglis D A, Brodhagen M (2014). Native soil fungi associated with compostable plastics in three contrasting agricultural settings. Applied Microbiology and Biotechnology, 98(14): 6467–6485

    Article  CAS  Google Scholar 

  • Mothapo N, Chen H, Cubeta M A, Grossman J M, Fuller F, Shi W (2015). Phylogenetic, taxonomic and functional diversity of fungal denitrifiers and associated N2O production efficacy. Soil Biology & Biochemistry, 83: 160–175

    Article  CAS  Google Scholar 

  • Munir E, Harefa R S M, Priyani N, Suryanto D (2018). Plastic degrading fungi Trichoderma viride and Aspergillus nomius isolated from local landfill soil in Medan. IOP Conference Series: Earth and Environmental Science, 126: 012145

    Google Scholar 

  • NBSC (National Bureau of Statistics of China) (2019). China Statistical Yearbook 2019. Beijing: China Statistics Press (in Chinese)

    Google Scholar 

  • Peng J, Wang K, Yin X B, Yin X Q, Du M F, Gao Y Z, Antwi P, Ren N Q, Wang A J (2019). Trophic mode and organics metabolic characteristic of fungal community in swine manure composting. Frontiers of Environmental Science & Engineering, 13(6): 93

    Article  CAS  Google Scholar 

  • Richards T A, Jones M D M, Leonard G, Bass D (2012). Marine fungi: Their ecology and molecular diversity. Annual Review of Marine Science, 4: 495–522

    Article  Google Scholar 

  • Sang N N, Soda S, Ishigaki T, Ike M (2012). Microorganisms in landfill bioreactors for accelerated stabilization of solid wastes. Journal of Bioscience and Bioengineering, 114(3): 243–250

    Article  Google Scholar 

  • Schadt C W, Martin A P, Lipson D A, Schmidt S K (2003). Seasonal dynamics of previously unknown fungal lineages in tundra soils. Science, 301(5638): 1359–1361

    Article  CAS  Google Scholar 

  • Sekhohola-Dlamini L, Tekere M (2020). Microbiology of municipal solid waste landfills: A review of microbial dynamics and ecological influences in waste bioprocessing. Biodegradation, 31: 1–21

    Article  CAS  Google Scholar 

  • Shannon C E (1948). A mathematical theory of communication. Bell System Technical Journal, 27(3): 379–423

    Article  Google Scholar 

  • Spina F, Cordero C, Schiliro T, Sgorbini B, Pignata C, Gilli G, Bicchi C, Varese G C (2015). Removal of micropollutants by fungal laccases in model solution and municipal wastewater: evaluation of estrogenic activity and ecotoxicity. Journal of Cleaner Production, 100: 185–194

    Article  CAS  Google Scholar 

  • Talbot J M, Bruns T D, Smith D P, Branco S, Glassman S I, Erlandson S, Vilgalys R, Peay K G (2013). Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition. Soil Biology & Biochemistry, 57: 282–291

    Article  CAS  Google Scholar 

  • Varnaitė R, Raudonienė V, Bridziuvienė D (2011). Enzymatic biodegradation of lignin-cellulose complex in plant origin material. Materials Science-Medziagotyra, 17(1): 99–103

    Article  Google Scholar 

  • Wang K, Mao H, Li X (2018). Functional characteristics and influence factors of microbial community in sewage sludge composting with inorganic bulking agent. Bioresource Technology, 249: 527–535

    Article  CAS  Google Scholar 

  • Xu S, Lu W, Liu Y, Ming Z, Liu Y, Meng R, Wang H (2017). Structure and diversity of bacterial communities in two large sanitary landfills in China as revealed by high-throughput sequencing (MiSeq). Waste Management (New York, N.Y.), 63: 41–48

    Article  CAS  Google Scholar 

  • Yilmaz N, López-Quintero C A, Vasco-Palacios A M, Frisvad J C, Theelen B, Boekhout T, Samson R A, Houbraken J (2016). Four novel Talaromyces species isolated from leaf litter from Colombian Amazon rain forests. Mycological Progress, 15(10–11): 1041–1056

    Article  Google Scholar 

  • Yokoyama K, Jinnai K, Sakiyama Y, Touma M (2012). Contribution of fungi to acetylene-tolerant and high ammonia availability-dependent nitrification potential in tea field soils with relatively neutral pH. Applied Soil Ecology, 62:37 41

    Google Scholar 

  • Zafar U, Houlden A, Robson G D (2013). Fungal communities associated with the biodegradation of polyester polyurethane buried under compost at different temperatures. Applied and Environmental Microbiology, 79(23): 7313–7324

    Article  CAS  Google Scholar 

  • Zhang X, Zhong Y, Yang S, Zhang W, Xu M, Ma A, Zhuang G, Chen G, Liu W (2014). Diversity and dynamics of the microbial community on decomposing wheat straw during mushroom compost production. Bioresource Technology, 170:183 195

    Google Scholar 

  • Zhu T, Meng T, Zhang J, Zhong W, Müller C, Cai Z (2015). Fungi-dominant heterotrophic nitrification in a subtropical forest soil of China. Journal of Soils and Sediments, 15(3): 705–709

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This work was supported by National Key R&D Program of China (2018YFD1100600) and National Natural Science Foundation of China (Grant No. 21976101).

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Correspondence to Wenjing Lu.

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Highlights

Ascomycota was the predominant phylum in sanitary landfill fungal communities.

• Saprophytic fungi may be of special importance in landfill ecology.

• Both richness and diversity of fungal community were lower in leachate than refuse.

• Physical habitat partly contributed to the geographic variance of fungal community.

• NO3 was considered the most significant abiotic factor shaping fungal community.

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Ye, R., Xu, S., Wang, Q. et al. Fungal diversity and its mechanism of community shaping in the milieu of sanitary landfill. Front. Environ. Sci. Eng. 15, 77 (2021). https://doi.org/10.1007/s11783-020-1370-6

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  • DOI: https://doi.org/10.1007/s11783-020-1370-6

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