Abstract
Artificial intelligence (AI) models and optimization algorithms (OA) are broadly employed in different fields of technology and science and have recently been applied to improve different stages of plant tissue culture. The usefulness of the application of AI-OA has been demonstrated in the prediction and optimization of length and number of microshoots or roots, biomass in plant cell cultures or hairy root culture, and optimization of environmental conditions to achieve maximum productivity and efficiency, as well as classification of microshoots and somatic embryos. Despite its potential, the use of AI and OA in this field has been limited due to complex definition terms and computational algorithms. Therefore, a systematic review to unravel modeling and optimizing methods is important for plant researchers and has been acknowledged in this study. First, the main steps for AI-OA development (from data selection to evaluation of prediction and classification models), as well as several AI models such as artificial neural networks (ANNs), neurofuzzy logic, support vector machines (SVMs), decision trees, random forest (FR), and genetic algorithms (GA), have been represented. Then, the application of AI-OA models in different steps of plant tissue culture has been discussed and highlighted. This review also points out limitations in the application of AI-OA in different plant tissue culture processes and provides a new view for future study objectives.
Key points
• Artificial intelligence models and optimization algorithms can be considered a novel and reliable computational method in plant tissue culture.
• This review provides the main steps and concepts for model development.
• The application of machine learning algorithms in different steps of plant tissue culture has been discussed and highlighted.
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Data availability
All processed data are available without restriction upon inquiry.
References
Aït-Sahalia Y, Xiu D (2019) Principal component analysis of high-frequency data. J Am Stat Assoc 114(525):287–303. https://doi.org/10.1080/01621459.2017.1401542
Akbari M, Deligani VJ (2020) Data driven models for compressive strength prediction of concrete at high temperatures. Front Struct Civ Eng 14:1–11. https://doi.org/10.1007/s11709-019-0593-8
Akin M, Eyduran E, Reed BM (2017) Use of RSM and CHAID data mining algorithm for predicting mineral nutrition of hazelnut. Plant Cell Tiss Org 128(2):303–316. https://doi.org/10.1007/s11240-016-1110-6
Akin M, Hand C, Eyduran E, Reed BM (2018) Predicting minor nutrient requirements of hazelnut shoot cultures using regression trees. Plant Cell Tiss Org 132(3):545–559. https://doi.org/10.1007/s11240-017-1353-x
Akin M, Eyduran SP, Eyduran E, Reed BM (2020) Analysis of macro nutrient related growth responses using multivariate adaptive regression splines. Plant Cell Tiss Org 140:661–670. https://doi.org/10.1007/s11240-019-01763-8
Alanagh EN, G-a G, Haddad R, Maleki S, Landín M, Gallego PP (2014) Design of tissue culture media for efficient Prunus rootstock micropropagation using artificial intelligence models. Plant Cell Tiss Org 117(3):349–359. https://doi.org/10.1007/s11240-014-0444-1
Albiol J, Campmajó C, Casas C, Poch M (1995) Biomass estimation in plant cell cultures: a neural network approach. Biotechnol Prog 11(1):88–92. https://doi.org/10.1021/bp00031a012
Alizadeh MR, Nikoo MR (2018) A fusion-based methodology for meteorological drought estimation using remote sensing data. Remote Sens Environ 211:229–247. https://doi.org/10.1016/j.rse.2018.04.001
Arab MM, Yadollahi A, Shojaeiyan A, Ahmadi H (2016) Artificial neural network genetic algorithm as powerful tool to predict and optimize in vitro proliferation mineral medium for G× N15 rootstock. Front Plant Sci 7:1526. https://doi.org/10.3389/fpls.2016.01526
Arab MM, Yadollahi A, Ahmadi H, Eftekhari M, Maleki M (2017) Mathematical modeling and optimizing of in vitro hormonal combination for G× N15 vegetative rootstock proliferation using Artificial Neural Network-Genetic Algorithm (ANN-GA). Front Plant Sci 8:1853. https://doi.org/10.3389/fpls.2017.01853
Arab MM, Yadollahi A, Eftekhari M, Ahmadi H, Akbari M, Khorami SS (2018) Modeling and optimizing a new culture medium for in vitro rooting of G× N15 Prunus rootstock using artificial neural network-genetic algorithm. Sci Rep 8(1):1–18. https://doi.org/10.1038/s41598-018-27858-4
Araghinejad S, Hosseini-Moghari S-M, Eslamian S (2017) Application of data-driven models in drought forecasting. In: Handbook of Drought and Water Scarcity. CRC Press, pp 423–440
Araghinejad S, Fayaz N, Hosseini-Moghari S-M (2018) Development of a hybrid data driven model for hydrological estimation. Water Resour Manag 32(11):3737–3750. https://doi.org/10.1007/s11269-018-2016-3
Arigundam U, Variyath AM, Siow YL, Marshall D, Debnath SC (2020) Liquid culture for efficient in vitro propagation of adventitious shoots in wild Vaccinium vitis-idaea ssp. minus (lingonberry) using temporary immersion and stationary bioreactors. Sci Hortic 264:109199. https://doi.org/10.1016/j.scienta.2020.109199
Arteta T, Hameg R, Landin M, Gallego P, Barreal M (2018) Neural networks models as decision-making tool for in vitro proliferation of hardy kiwi. Eur J Hortic Sci 83(4):259–265. https://doi.org/10.17660/eJHS.2018/83.4.6
Baek S, Ho T-T, Lee H, Jung G, Kim YE, Jeong C-S, Park S-Y (2020) Enhanced biosynthesis of triterpenoids in Centella asiatica hairy root culture by precursor feeding and elicitation. Plant Biotechnol Rep 14(1):45–53. https://doi.org/10.1007/s11816-019-00573-w
Barone JO (2019) Use of multiple regression analysis and artificial neural networks to model the effect of nitrogen in the organogenesis of Pinus taeda L. Plant Cell Tiss Org 137(3):455–464. https://doi.org/10.1007/s11240-019-01581-y
Bhojwani SS, Dantu PK (2013) Plant tissue culture: an introductory text. Springer
Biau G, Scornet E, Welbl J (2019) Neural random forests. Sankhya A 81(2):347–386. https://doi.org/10.1007/s13171-018-0133-y
Bozorg-Haddad O, Azarnivand A, Hosseini-Moghari S-M, Loáiciga HA (2016) Development of a comparative multiple criteria framework for ranking pareto optimal solutions of a multiobjective reservoir operation problem. J Irrig Drain Eng 142(7):04016019. https://doi.org/10.1061/(ASCE)IR.1943-4774.0001028
Bozorg-Haddad O, Azarnivand A, Hosseini-Moghari S-M, Loáiciga Hugo A (2017) WASPAS application and evolutionary algorithm benchmarking in optimal reservoir optimization problems. J Water Resour Plan Manag 143(1):04016070. https://doi.org/10.1061/(ASCE)WR.1943-5452.0000716
Breiman L (2001) Random forests. Mach Learn 45(1):5–32
Cuba-Díaz M, Rivera-Mora C, Navarrete E, Klagges M (2020) Advances of native and non-native Antarctic species to in vitro conservation: improvement of disinfection protocols. Sci Rep 10(1):1–10. https://doi.org/10.1038/s41598-020-60533-1
Deb K, Agrawal S, Pratap A, Meyarivan TA (2000) Fast elitist non-dominated sorting genetic algorithm for multi-objective optimization: NSGA-II. In: International conference on parallel problem solving from nature. Springer, Berlin, pp 849–858. https://doi.org/10.1007/3-540-45356-3_83
Deb K, Pratap A, Agarwal S, Meyarivan T (2002) A fast and elitist multiobjective genetic algorithm: NSGA-II. IEEE T Evolut Comput 6(2):182–197. https://doi.org/10.1109/4235.996017
Dezfooli D, Hosseini-Moghari S-M, Ebrahimi K, Araghinejad S (2018) Classification of water quality status based on minimum quality parameters: application of machine learning techniques. Model Earth Syst Environ 4(1):311–324. https://doi.org/10.1007/s40808-017-0406-9
Domingues GF, Soares VP, Leite HG, Ferraz AS, Ribeiro CAAS, Lorenzon AS, Marcatti GE, Teixeira TR, de Castro NLM, Mota PHS (2020) Artificial neural networks on integrated multispectral and SAR data for high-performance prediction of eucalyptus biomass. Comput Electron Agric 168:105089. https://doi.org/10.1016/j.compag.2019.105089
Dorzhigulov A, James AP (2020) Deep neuro-fuzzy architectures. In: Deep learning classifiers with memristive networks. Springer, Berlin, pp 195–213
Downey CD, Zoń J, Jones AMP (2019) Improving callus regeneration of Miscanthus× giganteus JM Greef, Deuter ex Hodk., Renvoize ‘M161’callus by inhibition of the phenylpropanoid biosynthetic pathway. In Vitro Cell Dev-Pl 55(1):109–120. https://doi.org/10.1007/s11627-018-09957-z
Ebrahimian H, Dialameh B, Hosseini-Moghari S-M, Ebrahimian A (2020) Optimal conjunctive use of aqua-agriculture reservoir and irrigation canal for paddy fields (case study: Tajan irrigation network, Iran). Paddy Water Environ 18(3):499–514. https://doi.org/10.1007/s10333-020-00797-5
Frossyniotis D, Moschopoulou G, Yialouris C (2008) Artificial Neural Network Selection for the Detection of Plant Viruses World. J Agric Sci 4(1):114–120
Gago J, Landín M, Gallego PP (2010a) A neurofuzzy logic approach for modeling plant processes: A practical case of in vitro direct rooting and acclimatization of Vitis vinifera L. Plant Sci 179(3):241–249. https://doi.org/10.1016/j.plantsci.2010.05.009
Gago J, Martínez-Núñez L, Landín M, Gallego P (2010b) Artificial neural networks as an alternative to the traditional statistical methodology in plant research. J Plant Physiol 167(1):23–27. https://doi.org/10.1016/j.jplph.2009.07.007
Gago J, Pérez-Tornero O, Landín M, Burgos L, Gallego PP (2011) Improving knowledge of plant tissue culture and media formulation by neurofuzzy logic: a practical case of data mining using apricot databases. J Plant Physiol 168(15):1858–1865. https://doi.org/10.1016/j.jplph.2011.04.008
Gago J, Martinez-Nunez L, Landin M, Flexas J, Gallego PP (2014) Modeling the effects of light and sucrose on in vitro propagated plants: a multiscale system analysis using artificial intelligence technology. PLoS One 9(1):e85989. https://doi.org/10.1371/journal.pone.0085989
García-Pérez P, Lozano-Milo E, Landín M, Gallego PP (2020a) Combining medicinal plant in vitro culture with machine learning technologies for maximizing the production of phenolic compounds. Antioxidants 9(3):210. https://doi.org/10.3390/antiox9030210
García-Pérez P, Lozano-Milo E, Landín M, Gallego PP (2020b) Machine learning technology reveals the concealed interactions of phytohormones on medicinal plant in vitro organogenesis. Biomolecules 10(5):746. https://doi.org/10.3390/biom10050746
George T, Amudha T (2020) Genetic algorithm based multi-objective optimization framework to solve traveling salesman problem. In: Adv Intel Syst Comput. Springer, Berlin, pp 141–151
Goswami M, Akhtar S, Osama K (2018) Strategies for monitoring and modeling the growth of hairy root cultures: An in silico perspective. In: Hairy roots. Springer, Berlin, pp 311–327
Goudarzi A, Li Y, Xiang J (2020) A hybrid non-linear time-varying double-weighted particle swarm optimization for solving non-convex combined environmental economic dispatch problem. Appl Soft Comput 86:105894. https://doi.org/10.1016/j.asoc.2019.105894
Gray DJ, Trigiano RN (2018) Introduction to plant tissue culture. In: Plant tissue culture concepts and laboratory exercises. Routledge, pp 3–7
Guangrong H, Dehui D, Weilian H, Jiaxin J (2008) Optimization of medium composition for thermostable protease production by Bacillus sp. HS08 with a statistical method. Afr J Biotechnol 7(8)
Gupta SD, Pattanayak A (2017) Intelligent image analysis (IIA) using artificial neural network (ANN) for non-invasive estimation of chlorophyll content in micropropagated plants of potato. Vitro Cell Dev-Pl 53(6):520–526. https://doi.org/10.1007/s11627-017-9825-6
Haddad Omid B, Hosseini-Moghari S-M, Loáiciga Hugo A (2016) Biogeography-Based Optimization Algorithm for Optimal Operation of Reservoir Systems. J Water Resour Plan Manag 142(1):04015034. https://doi.org/10.1061/(ASCE)WR.1943-5452.0000558
Hararuk O, Zwart JA, Jones SE, Prairie Y, Solomon CT (2018) Model-data fusion to test hypothesized drivers of lake carbon cycling reveals importance of physical controls. J Geophys Res Biogeosci 123(3):1130–1142. https://doi.org/10.1002/2017JG004084
Hesami M, Daneshvar MH (2018a) In vitro adventitious shoot regeneration through direct and indirect organogenesis from seedling-derived hypocotyl segments of Ficus religiosa L.: an important medicinal plant. HortScience 53(1):55–61. https://doi.org/10.21273/HORTSCI12637-17
Hesami M, Daneshvar MH (2018b) Indirect organogenesis through seedling-derived leaf segments of Ficus religiosa-a multipurpose woody medicinal plant. J Crop Sci Biotechnol 21(2):129–136. https://doi.org/10.1007/s12892-018-0024-0
Hesami M, Daneshvar MH, Lotfi-Jalalabadi A (2017a) Effect of sodium hypochlorite on control of in vitro contamination and seed germination of Ficus religiosa. Iranian J Plant Physiol 7(4):2157–2162. https://doi.org/10.22034/IJPP.2017.537980
Hesami M, Daneshvar MH, Lotfi A (2017b) In vitro shoot proliferation through cotyledonary node and shoot tip explants of Ficus religiosa L. Plant Tissue Cult Biotechnol 27(1):85–88. https://doi.org/10.3329/ptcb.v27i1.35017
Hesami M, Naderi R, Yoosefzadeh-Najafabadi M, Rahmati M (2017c) Data-driven modeling in plant tissue culture. J Appl Environ Biol Sci 7(8):37–44
Hesami M, Daneshvar MH, Yoosefzadeh-Najafabadi M (2018a) Establishment of a protocol for in vitro seed germination and callus formation of Ficus religiosa L., an important medicinal plant. Jundishapur J Nat Pharm Prod 13(4):e62682. https://doi.org/10.5812/jjnpp.62682
Hesami M, Naderi R, Yoosefzadeh-Najafabadi M (2018b) Optimizing sterilization conditions and growth regulator effects on in vitro shoot regeneration through direct organogenesis in Chenopodium quinoa. BioTechnologia 99(1):49–57. https://doi.org/10.5114/bta.2018.73561
Hesami M, Naderi R, Yoosefzadeh-Najafabadi M, Maleki M (2018c) In vitro culture as a powerful method for conserving Iranian ornamental geophytes. BioTechnologia 99(1):73–81. https://doi.org/10.5114/bta.2018.73563
Hesami M, Daneshvar MH, Yoosefzadeh-Najafabadi M (2019a) An efficient in vitro shoot regeneration through direct organogenesis from seedling-derived petiole and leaf segments and acclimatization of Ficus religiosa. J For Res 30(3):807–815. https://doi.org/10.1007/s11676-018-0647-0
Hesami M, Naderi R, Tohidfar M (2019b) Modeling and optimizing in vitro sterilization of chrysanthemum via multilayer perceptron-non-dominated sorting genetic algorithm-II (MLP-NSGAII). Front Plant Sci 10:282. https://doi.org/10.3389/fpls.2019.00282
Hesami M, Naderi R, Tohidfar M (2019c) Modeling and optimizing medium composition for shoot regeneration of Chrysanthemum via radial basis function-non-dominated sorting genetic algorithm-II (RBF-NSGAII). Sci Rep 9(1):18237. https://doi.org/10.1038/s41598-019-54257-0
Hesami M, Naderi R, Tohidfar M, Yoosefzadeh-Najafabadi M (2019d) Application of adaptive neuro-fuzzy inference system-non-dominated sorting genetic algorithm-II (ANFIS-NSGAII) for modeling and optimizing somatic embryogenesis of Chrysanthemum. Front Plant Sci 10:869. https://doi.org/10.3389/fpls.2019.00869
Hesami M, Condori-Apfata JA, Valderrama Valencia M, Mohammadi M (2020a) Application of artificial neural network for modeling and studying in vitro genotype-independent shoot regeneration in Wheat. Appl Sci 10(15):5370. https://doi.org/10.3390/app10155370
Hesami M, Naderi R, Tohidfar M, Yoosefzadeh-Najafabadi M (2020b) Development of support vector machine-based model and comparative analysis with artificial neural network for modeling the plant tissue culture procedures: effect of plant growth regulators on somatic embryogenesis of chrysanthemum, as a case study. Plant Methods 16(1):112. https://doi.org/10.1186/s13007-020-00655-9
Hildebrandt AC, Riker A, Duggar B (1946) The influence of the composition of the medium on growth in vitro of excised tobacco and sunflower tissue cultures. Am J Bot:591–597. https://doi.org/10.2307/2437399
Holland JH (1992) Adaptation in natural and artificial systems: an introductory analysis with applications to biology, control, and artificial intelligence. MIT press
Honda H, Takikawa N, Noguchi H, Hanai T, Kobayashi T (1997) Image analysis associated with a fuzzy neural network and estimation of shoot length of regenerated rice callus. J Ferment Bioeng 84(4):342–347. https://doi.org/10.1016/S0922-338X(97)89256-2
Honda H, Ito T, Yamada J, Hanai T, Matsuoka M, Kobayashi T (1999) Selection of embryogenic sugarcane callus by image analysis. J Biosci Bioeng 87(5):700–702. https://doi.org/10.1016/S1389-1723(99)80138-8
Honda H, Liu C, Kobayashi T (2001) Large-scale plant micropropagation. In: Plant Cells. Springer, Berlin, pp 157–182
Hornik K, Stinchcombe M, White H (1989) Multilayer feedforward networks are universal approximators. Neural Netw 2(5):359–366
Hosseini-Moghari SM, Araghinejad S (2015) Monthly and seasonal drought forecasting using statistical neural networks. Environ Earth Sci 74(1):397–412. https://doi.org/10.1007/s12665-015-4047-x
Hosseini-Moghari S-M, Morovati R, Moghadas M, Araghinejad S (2015) Optimum operation of reservoir using two evolutionary algorithms: imperialist competitive algorithm (ICA) and cuckoo optimization algorithm (COA). Water Resour Manag 29(10):3749–3769. https://doi.org/10.1007/s11269-015-1027-6
Hosseini-Moghari S-M, Araghinejad S, Azarnivand A (2017) Drought forecasting using data-driven methods and an evolutionary algorithm. Model Earth Syst Environ 3(4):1675–1689. https://doi.org/10.1007/s40808-017-0385-x
Ivashchuk OA, Fedorova V, Shcherbinina NV, Maslova EV, Shamraeva E (2018) Microclonal propagation of plant process modeling and optimization of its parameters based on neural network. Drug Invent Today 10(3):3170–3175
Jamshidi S, Yadollahi A, Ahmadi H, Arab M, Eftekhari MJF (2016) Predicting in vitro culture medium macro-nutrients composition for pear rootstocks using regression analysis and neural network models. Front Plant Sci 7:274. https://doi.org/10.3389/fpls.2016.00274
Jamshidi S, Yadollahi A, Arab MM, Soltani M, Eftekhari M, Sabzalipoor H, Sheikhi A, Shiri J (2019) Combining gene expression programming and genetic algorithm as a powerful hybrid modeling approach for pear rootstocks tissue culture media formulation. Plant Methods 15(1):136. https://doi.org/10.1186/s13007-019-0520-y
Kalinowska K, Chamas S, Unkel K, Demidov D, Lermontova I, Dresselhaus T, Kumlehn J, Dunemann F, Houben A (2019) State-of-the-art and novel developments of in vivo haploid technologies. Theor Appl Genet 132(3):593–605. https://doi.org/10.1007/s00122-018-3261-9
Kaur P, Gupta RC, Dey A, Malik T, Pandey DK (2020) Optimization of salicylic acid and chitosan treatment for bitter secoiridoid and xanthone glycosides production in shoot cultures of Swertia paniculata using response surface methodology and artificial neural network. BMC Plant Biol 20(1):225. https://doi.org/10.1186/s12870-020-02410-7
Khvatkov P, Chernobrovkina M, Okuneva A, Dolgov S (2019) Creation of culture media for efficient duckweeds micropropagation (Wolffia arrhiza and Lemna minor) using artificial mathematical optimization models. Plant Cell Tiss Org 136(1):85–100. https://doi.org/10.1007/s11240-018-1494-
Kranjčić N, Medak D, Župan R, Rezo M (2019) Support Vector Machine Accuracy Assessment for Extracting Green Urban Areas in Towns. Remote Sens 11(6):655. https://doi.org/10.3390/rs11060655
Kumari B, Swarnkar T (2020) Importance of data standardization methods on stock indices prediction accuracy. In: Advanced computing and intelligent engineering. Springer, Berlin, pp 309–318. https://doi.org/10.1007/978-981-15-1081-6_26
Kusiak A, Li M, Zhang Z (2010) A data-driven approach for steam load prediction in buildings. Appl Energy 87(3):925–933. https://doi.org/10.1016/j.apenergy.2009.09.004
Lan T, Tong C, Yu H, Shi X, Luo L (2020) Nonlinear process monitoring based on decentralized generalized regression neural networks. Expert Syst Appl 150:113273. https://doi.org/10.1016/j.eswa.2020.113273
Lin J, Zhao Y, Watson D, Chen C (2020) The radial basis function differential quadrature method with ghost points. Math Comput Simul 173:105–114. https://doi.org/10.1016/j.matcom.2020.01.006
Maddalena ET, Lian Y, Jones CN (2020) Data-driven methods for building control—a review and promising future directions. Control Eng Pract 95:104211. https://doi.org/10.1016/j.conengprac.2019.104211
Mahendra, Prasad V, Gupta SD (2004) Trichromatic sorting of in vitro regenerated plants of gladiolus using adaptive resonance theory. Curr Sci 87(3):348–353
Mansouri A, Fadavi A, Mortazavian SMM (2016) An artificial intelligence approach for modeling volume and fresh weight of callus–A case study of cumin (Cuminum cyminum L.). J Theor Biol 397:199–205. https://doi.org/10.1016/j.jtbi.2016.03.009
Mehrotra S, Prakash O, Mishra B, Dwevedi B (2008) Efficiency of neural networks for prediction of in vitro culture conditions and inoculum properties for optimum productivity. Plant Cell Tiss Org 95(1):29–35. https://doi.org/10.1007/s11240-008-9410-0
Mehrotra S, Prakash O, Khan F, Kukreja A (2013) Efficiency of neural network-based combinatorial model predicting optimal culture conditions for maximum biomass yields in hairy root cultures. Plant Cell Rep 32(2):309–317. https://doi.org/10.1007/s00299-012-1364-3
Meng T, Jing X, Yan Z, Pedrycz W (2020) A survey on machine learning for data fusion. Inf Fusion 57:115–129. https://doi.org/10.1016/j.inffus.2019.12.001
Molto E, Harrell RC (1993) Neural network classification of sweet potato embryos. In: Optics in Agriculture and Forestry. International Society for Optics and Photonics, pp 239–249
Moravej M (2017) Discussion of “Modified Firefly Algorithm for Solving Multireservoir Operation in Continuous and Discrete Domains” by Irene Garousi-Nejad, Omid Bozorg-Haddad, and Hugo A. Loáiciga. J Water Resour Plan Manag 143(10):07017004. https://doi.org/10.1061/(ASCE)WR.1943-5452.0000644
Moravej M (2018) Discussion of Application of the Firefly Algorithm to Optimal Operation of Reservoirs with the Purpose of Irrigation Supply and Hydropower Production by Irene Garousi-Nejad, Omid Bozorg-Haddad, Hugo A. Lo, and Miguel A. Mari. J Irrig Drain Eng 144(1):07017019. https://doi.org/10.1061/(ASCE)IR.1943-4774.0001259
Moravej M, Hosseini-Moghari S-M (2016) Large scale reservoirs system operation optimization: the interior search algorithm (ISA) approach. Water Resour Manag 30(10):3389–3407. https://doi.org/10.1007/s11269-016-1358-y
Moravej M, Amani P, Hosseini-Moghari S-M (2020) Groundwater level simulation and forecasting using interior search algorithm-least square support vector regression (ISA-LSSVR). Groundw Sustain Dev 11:1–18
Mridula MR, Nair AS, Kumar KS (2018) Genetic programming based models in plant tissue culture: an addendum to traditional statistical approach. PLoS Comput Biol 14(2):e1005976. https://doi.org/10.1371/journal.pcbi.1005976
Munasinghe SP, Somaratne S, Weerakoon SR, Ranasinghe C (2020) Prediction of chemical composition for callus production in Gyrinops walla Gaetner through machine learning. Inf Process Agric 7(2):1–12. https://doi.org/10.1016/j.inpa.2019.12.001
Murase H, Okayama T (2008) Intelligent inverse analysis for temperature distribution in a plant culture vessel. In: Plant Tissue Culture Engineering. Springer, Berlin, pp 373–394
Murase H, Tani A, Honami N, Takigawa H, Nishiura Y (1996) Inverse technique for analysis of convective heat transfer over the surface of plant culture vessel. T ASABE 39(6):2277–2282. https://doi.org/10.13031/2013.27737
Murashige T, Skoog F (1962) A revised medium for rapid growth and bio assays with tobacco tissue cultures. Physiol Plant 15(3):473–497. https://doi.org/10.1111/j.1399-3054.1962.tb08052.x
Nezami-Alanagh E, Garoosi G-A, Maleki S, Landín M, Gallego PP (2017) Predicting optimal in vitro culture medium for Pistacia vera micropropagation using neural networks models. Plant Cell Tiss Org 129(1):19–33. https://doi.org/10.1007/s11240-016-1152-9
Nezami-Alanagh E, Garoosi G-A, Landín M, Gallego PP (2018) Combining DOE with neurofuzzy logic for healthy mineral nutrition of pistachio rootstocks in vitro culture. Front Plant Sci 9:1474. https://doi.org/10.3389/fpls.2018.01474
Nezami-Alanagh E, Garoosi G-A, Landin M, Gallego PP (2019) Computer-based tools provide new insight into the key factors that cause physiological disorders of pistachio rootstocks cultured in vitro. Sci Rep 9(1):1–15. https://doi.org/10.1038/s41598-019-46155-2
Niazian M (2019) Application of genetics and biotechnology for improving medicinal plants. Planta 249(4):953–973. https://doi.org/10.1007/s00425-019-03099-1
Niazian M, Sadat-Noori SA, Abdipour M (2018a) Modeling the seed yield of Ajowan (Trachyspermum ammi L.) using artificial neural network and multiple linear regression models. Ind Crop Prod 117:224–234. https://doi.org/10.1016/j.indcrop.2018.03.013
Niazian M, Sadat-Noori SA, Abdipour M, Tohidfar M, Mortazavian SMM (2018b) Image processing and artificial neural network-based models to measure and predict physical properties of embryogenic callus and number of somatic embryos in ajowan (Trachyspermum ammi (L.) Sprague). In Vitro Cell Dev-Pl 54(1):54–68. https://doi.org/10.1007/s11627-017-9877-7
Niazian M, Shariatpanahi ME, Abdipour M, Oroojloo M (2019) Modeling callus induction and regeneration in an anther culture of tomato (Lycopersicon esculentum L.) using image processing and artificial neural network method. Protoplasma 256(5):1317–1332. https://doi.org/10.1007/s00709-019-01379-x
Osama K, Somvanshi P, Pandey AK, Mishra BN (2013) Modelling of nutrient mist reactor for hairy root growth using artificial neural network. Eur J Sci Res 97(4):516–526
Osama K, Mishra BN, Somvanshi P (2015) Machine learning techniques in plant biology. In: PlantOmics: The Omics of plant science. Springer, Berlin, pp 731–754. https://doi.org/10.1007/978-81-322-2172-2_26
Phillips GC, Garda M (2019) Plant tissue culture media and practices: an overview. Vitro Cell Dev-Pl 55(3):242–257. https://doi.org/10.1007/s11627-019-09983-5
Piunno KF, Golenia G, Boudko EA, Downey C, Jones AMP (2019) Regeneration of shoots from immature and mature inflorescences of Cannabis sativa. Can J Plant Sci 99(4):556–559. https://doi.org/10.1139/cjps-2018-0308
Prado F, Minutolo MC, Kristjanpoller W (2020) Forecasting based on an ensemble autoregressive moving average-adaptive neuro-fuzzy inference system–neural network-genetic algorithm framework. Energy 197:117159. https://doi.org/10.1016/j.energy.2020.117159
Prakash O, Mehrotra S, Krishna A, Mishra BN (2010) A neural network approach for the prediction of in vitro culture parameters for maximum biomass yields in hairy root cultures. J Theor Biol 265(4):579–585. https://doi.org/10.1016/j.jtbi.2010.05.020
Prasad V, Gupta SD (2008a) Applications and potentials of artificial neural networks in plant tissue culture. In: Plan Tissue Culture Engineering. Springer, Berlin, pp 47–67
Prasad V, Gupta SD (2008b) Photometric clustering of regenerated plants of gladiolus by neural networks and its biological validation. Comput Electron Agric 60(1):8–17. https://doi.org/10.1016/j.compag.2007.05.006
Prasad A, Prakash O, Mehrotra S, Khan F, Mathur AK, Mathur A (2017) Artificial neural network-based model for the prediction of optimal growth and culture conditions for maximum biomass accumulation in multiple shoot cultures of Centella asiatica. Protoplasma 254(1):335–341. https://doi.org/10.1007/s00709-016-0953-3
Raj S, Saudagar P (2019) Plant cell culture as alternatives to produce secondary metabolites. In: Natural bio-active compounds. Springer, Berlin, pp 265–286
Raza G, Singh MB, Bhalla PL (2020) Somatic embryogenesis and plant regeneration from commercial soybean cultivars. Plants 9(1):38. https://doi.org/10.3390/plants9010038
Rizvi Z, Mishra P, Roy S, Kukreja A, Sharma A (2012) Application of artificial neural networks for predicting maximum in vitro shoot biomass production of safed musli (Chlorophytum borivilianum). J Med Diag Meth 1:1–6. https://doi.org/10.4172/scientificreports.464
Ruan R, Xu J, Zhang C, Chi CM, Hu WS (1997) Classification of plant somatic embryos by using neural network classifiers. Biotechnol Prog 13(6):741–746. https://doi.org/10.1021/bp9700972
Salehi M, Farhadi S, Moieni A, Safaie N, Ahmadi H (2020a) Mathematical modeling of growth and paclitaxel biosynthesis in Corylus avellana cell culture responding to fungal elicitors using multilayer perceptron-genetic algorithm. Front Plant Sci 11:1148. https://doi.org/10.3389/fpls.2020.01148
Salehi M, Moieni A, Safaie N, Farhadi S (2020b) Whole fungal elicitors boost paclitaxel biosynthesis induction in Corylus avellana cell culture. PLoS One 15(7):e0236191. https://doi.org/10.1371/journal.pone.0236191
Sheikhi A, Mirdehghan SH, Arab MM, Eftekhari M, Ahmadi H, Jamshidi S, Gheysarbigi S (2020) Novel organic-based postharvest sanitizer formulation using Box Behnken design and mathematical modeling approach: A case study of fresh pistachio storage under modified atmosphere packaging. Postharvest Biol Technol 160:111047. https://doi.org/10.1016/j.postharvbio.2019.111047
Shiotani S, Fukuda T, Arai F, Takeuchi N, Sasaki K, Kinosita T (1994) Cell recognition by image processing: recognition of dead or living plant cells by neural network. JSME Int J 37(1):202–208. https://doi.org/10.1299/jsmec1993.37.202
Shukla MR, Piunno K, Saxena PK, Jones AMP (2020) Improved in vitro rooting in liquid culture using a two piece scaffold system. Eng Life Sci 20:1–7. https://doi.org/10.1002/elsc.201900133
Silva JCF, Teixeira RM, Silva FF, Brommonschenkel SH, Fontes EP (2019) Machine learning approaches and their current application in plant molecular biology: a systematic review. Plant Sci 284:37–47. https://doi.org/10.1016/j.plantsci.2019.03.020
Solis-Castañeda GJ, Zamilpa A, Cabañas-García E, Bahena SM, Pérez-Molphe-Balch E, Gómez-Aguirre YA (2020) Identification and quantitative determination of feruloyl-glucoside from hairy root cultures of Turbinicarpus lophophoroides (Werderm.) Buxb. & Backeb.(Cactaceae). In Vitro Cell Dev-Pl 56(1):8–17. https://doi.org/10.1007/s11627-019-10029-z
Specht DF (1991) A general regression neural network. IEEE T Neur Net 2(6):568–576. https://doi.org/10.1109/72.97934
Srinivas N, Deb K (1994) Muiltiobjective optimization using nondominated sorting in genetic algorithms. Evol Comput 2(3):221–248. https://doi.org/10.1162/evco.1994.2.3.221
Tang Z, Fishwick PA (1993) Feedforward neural nets as models for time series forecasting. ORSA J Comput 5(4):374–385. https://doi.org/10.1287/ijoc.5.4.374
Tani A, Kiyota M, Taira T, Alga I (1991) Effect of light intensity and aeration on temperature distribution inside plant culture vessel. Plant Cell Tiss Org 8(2):133–135
Tani A, Murase H, Kiyota M, Honami N (1992) Growth simulation of alfalfa cuttings in vitro by Kalman filter neural network. Acta Hortic 319:671–676. https://doi.org/10.17660/ActaHortic.1992.319.108
Teixeira da Silva JA, Kulus D, Zhang X, Zeng S, Ma G, Piqueras A (2016) Disinfection of explants for saffron (Crocus sativus L.) tissue culture. Environ Exp Bot 14(4):183–198
Thomas T, Vijayaraghavan AP, Emmanuel S (2020) Applications of decision trees. In: Machine learning approaches in cyber security analytics. Springer, Berlin, pp 157–184
Tong S, Zhang X, Tong Z, Wu Y, Tang N, Zhong W (2020) Online ash fouling prediction for boiler heating surfaces based on wavelet analysis and support vector regression. Energies 13(1):59. https://doi.org/10.3390/en13010059
Uozumi N, Yoshino T, Shiotani S, Suehara K-I, Arai F, Fukuda T, Kobayashi T (1993) Application of image analysis with neural network for plant somatic embryo culture. J Ferment Bioeng 76(6):505–509. https://doi.org/10.1016/0922-338X(93)90249-8
Vapnik V (2013) The nature of statistical learning theory. Springer science & business media, Berlin
Verma P, Anjum S, Khan SA, Roy S, Odstrcilik J, Mathur AK (2016) Envisaging the regulation of alkaloid biosynthesis and associated growth kinetics in hairy roots of Vinca minor through the function of artificial neural network. Appl Biochem Biotechnol 178(6):1154–1166. https://doi.org/10.1007/s12010-015-1935-1
Wanas N, Auda G, Kamel MS, Karray F 1998. On the optimal number of hidden nodes in a neural network. In: Conference Proceedings. IEEE Canadian Conference on Electrical and Computer Engineering (Cat. No. 98TH8341), . IEEE, pp 918-921. doi:https://doi.org/10.1109/CCECE.1998.685648
Wang G-F, Qin H-Y, Sun D, Fan S-T, Yang Y-M, Wang Z-X, Xu P-L, Zhao Y, Liu Y-X, Ai J (2018) Haploid plant regeneration from hardy kiwifruit (Actinidia arguta Planch.) anther culture. Plant Cell Tiss Org 134(1):15–28. https://doi.org/10.1007/s11240-018-1396-7
Wong FS (1991) Time series forecasting using backpropagation neural networks. Neurocomputing 2(4):147–159. https://doi.org/10.1016/0925-2312(91)90045-D
Ying X, Tang B, Zhou C (2020) Nursing scheme based on back propagation neural network and probabilistic neural network in chronic kidney disease. J Med Imaging Health Inform 10(2):416–421. https://doi.org/10.1166/jmihi.2020.2879
Yun Y, Chuluunsukh A, Gen M (2020) Sustainable closed-loop supply chain design problem: a hybrid genetic algorithm approach. Mathematics 8(1):84. https://doi.org/10.3390/math8010084
Zhang C, Timmis R, Hu W-S (1999) A neural network based pattern recognition system for somatic embryos of Douglas fir. Plant Cell Tiss Org 56(1):25–35. https://doi.org/10.1023/A:1006287917534
Zhang Q, Deng D, Dai W, Li J, Jin X (2020) Optimization of culture conditions for differentiation of melon based on artificial neural network and genetic algorithm. Sci Rep 10(1):3524. https://doi.org/10.1038/s41598-020-60278-x
Zielinska S, Kepczynska E (2013) Neural modeling of plant tissue cultures: a review. BioTechnologia 94(3):253–268. https://doi.org/10.5114/bta.2013.46419
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Hesami, M., Jones, A.M.P. Application of artificial intelligence models and optimization algorithms in plant cell and tissue culture. Appl Microbiol Biotechnol 104, 9449–9485 (2020). https://doi.org/10.1007/s00253-020-10888-2
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DOI: https://doi.org/10.1007/s00253-020-10888-2