Abstract
The Gram-positive bacterium Enterococcus faecalis is currently one of the major pathogens of nosocomial infections. The lifestyle of E. faecalis relies primarily on its remarkable capacity to face and survive in harsh environmental conditions. Toxin-antitoxin (TA) systems have been linked to the growth control of bacteria in response to adverse environments but have rarely been reported in Enterococcus. Three functional type II TA systems were identified among the 10 putative TA systems encoded by E. faecalis ATCC29212. These toxin genes have conserved domains homologous to MazF (DR75_1948) and ImmA/IrrE family metallo-endopeptidases (DR75_1673 and DR75_2160). Overexpression of toxin genes could inhibit the growth of Escherichia coli. However, the toxin DR75_1673 could not inhibit bacterial growth, and the bacteriostatic effect occurred only when it was coexpressed with the antitoxin DR75_1672. DR75_1948-DR75_1949 and DR75_160-DR75_2161 could maintain the stable inheritance of the unstable plasmid pLMO12102 in E. coli. Moreover, the transcription levels of these TAs showed significant differences when cultivated under normal conditions and with different temperatures, antibiotics, anaerobic agents and H2O2. When DR75_2161 was knocked out, the growth of the mutant strain at high temperature and oxidative stress was limited. The experimental characterization of these TAs loci might be helpful to investigate the key roles of type II TA systems in the physiology and environmental stress responses of Enterococcus.
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Blanchard, L., Guérin, P., Roche, D., Cruveiller, S., Pignol, D., Vallenet, D., Armengaud, J., and de Groot, A. 2017. Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria. Microbiologyopen 6, e00477.
Bose, B., Auchtung, J.M., Lee, C.A., and Grossman, A.D. 2008. A conserved anti-repressor controls horizontal gene transfer by proteolysis. Mol. Microbiol. 70, 570–582.
Bustamante, P., Tello, M., and Orellana, O. 2014. Toxin-antitoxin systems in the mobile genome of Acidithiobacillus ferrooxidans. PLoS ONE 9, e112226.
Choi, J.S., Kim, W., Suk, S., Park, H., Bak, G., Yoon, J., and Lee, Y. 2018. The small RNA, SdsR, acts as a novel type of toxin in Escherichia coli. RNA Biol. 15, 1319–1335.
de Groot, A., Siponen, M.I., Magerand, R., Eugénie, N., Martin-Arevalillo, R., Doloy, J., Lemaire, D., Brandelet, G., Parcy, F., Dumas, R., et al. 2019. Crystal structure of the transcriptional repressor DdrO: Insight into the metalloprotease/repressor-controlled radiation response in Deinococcus. Nucleic Acids Res. 47, 11403–11417.
Gao, W., Howden, B.P., and Stinear, T.P. 2018. Evolution of virulence in Enterococcus faecium, a hospital-adapted opportunistic pathogen. Curr. Opin. Microbiol. 41, 76–82.
Gao, G., Lu, H., Huang, L., and Hua, Y. 2005. Construction of DNA damage response gene pprI function-deficient and function-complementary mutants in Deinococcus radiodurans. Chin. Sci. Bull. 50, 311–316.
García-Solache, M. and Rice, L.B. 2019. The enterococcus: a model of adaptability to its environment. Clin. Microbiol. Rev. 32, e00058–18.
Gerdes, K., Rasmussen, P.B., and Molin, S. 1986. Unique type of plasmid maintenance function: postsegregational killing of plasmidfree cells. Proc. Natl. Acad. Sci. USA 83, 3116–3120.
Goeders, N. and Van Melderen, L. 2014. Toxin-antitoxin systems as multilevel interaction systems. Toxins 6, 304–324.
Gómez, L., Alvarez, F., Betancur, D., and Oñate, A. 2018. Brucellosis vaccines based on the open reading frames from genomic island 3 of Brucella abortus. Vaccine 36, 2928–2936.
Hall, A.M., Gollan, B., and Helaine, S. 2017. Toxin-antitoxin systems: reversible toxicity. Curr. Opin. Microbiol. 36, 102–110.
Harms, A., Brodersen, D.E., Mitarai, N., and Gerdes, K. 2018. Toxins, targets, and triggers: an overview of toxin-antitoxin biology. Mol. Cell 70, 768–784.
Harms, A., Stanger, F.V., Scheu, P.D., de Jong, I.G., Goepfert, A., Glatter, T., Gerdes, K., Schirmer, T., and Dehio, C. 2015. Adenylylation of gyrase and topo IV by FicT toxins disrupts bacterial DNA topology. Cell Rep. 12, 1497–1507.
Landini, P., Egli, T., Wolf, J., and Lacour, S. 2014. SigmaS, a major player in the response to environmental stresses in Escherichia coli: Role, regulation and mechanisms of promoter recognition. Environ. Microbiol. Rep. 6, 1–13.
Leinweber, H., Alotaibi, S.M.I., Overballe-Petersen, S., Hansen, F., Hasman, H., Bortolaia, V., Hammerum, A.M., and Ingmer, H. 2018. Vancomycin resistance in Enterococcus faecium isolated from danish chicken meat is located on a pVEF4-like plasmid persisting in poultry for 18 years. Int. J. Antimicrob. Agents 52, 283–286.
Li, D., Li, X.Y., Schwarz, S., Yang, M., Zhang, S.M., Hao, W., and Du, X.D. 2019. Tn6674 is a novel enterococcal optrA-carrying multiresistance transposon of the Tn554 family. Antimicrob. Agents Chemother. 63, e00809–19.
Li, Z., Li, X., Xiao, X., and Xu, J. 2016. An integrative genomic island affects the adaptations of the piezophilic hyperthermophilic archaeon Pyrococcus yayanosii to high temperature and high hydrostatic pressure. Front. Microbiol. 7, 1927.
Li, Z., Song, Q., Wang, Y., Xiao, X., and Xu, J. 2018. Identification of a functional toxin-antitoxin system located in the genomic island PYG1 of piezophilic hyperthermophilic archaeon Pyrococcus yayanosii. Extremophiles 22, 347–357.
Li, Y., Yang, L., Fu, J., Yan, M., Chen, D., and Zhang, L. 2017. Microbial pathogenicity and virulence mediated by integrons on Grampositive microorganisms. Microb. Pathog. 111, 481–486.
Lobato-Márquez, D., Díaz-Orejas, R., and García-Del Portillo, F. 2016. Toxin-antitoxins and bacterial virulence. FEMS Microbiol. Rev. 40, 592–609.
Ludanyi, M., Blanchard, L., Dulermo, R., Brandelet, G., Bellanger, L., Pignol, D., Lemaire, D., and de Groot, A. 2014. Radiation response in Deinococcus deserti: IrrE is a metalloprotease that cleaves repressor protein DdrO. Mol. Microbiol. 94, 434–449.
Makarova, K.S., Wolf, Y.I., and Koonin, E.V. 2009. Comprehensive comparative-genomic analysis of Type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes. Biol. Direct 4, 19.
Michaux, C., Hartke, A., Martini, C., Reiss, S., Albrecht, D., Budin-Verneuil, A., Sanguinetti, M., Engelmann, S., Hain, T., Verneuil, N., et al. 2014. Involvement of Enterococcus faecalis small RNAs in stress response and virulence. Infect. Immun. 82, 3599–3611.
Michaux, C., Sanguinetti, M., Reffuveille, F., Auffray, Y., Posteraro, B., Gilmore, M.S., Hartke, A., and Giard, J.C. 2011. SlyA is a transcriptional regulator involved in the virulence of Enterococcus faecalis. Infect. Immun. 79, 2638–2645.
Ortiz-Román, L., Riquelme-Neira, R., Vidal, R., and Onate, A. 2014. Roles of genomic island 3 (GI-3) BAB1_0267 and BAB1_0270 open reading frames (ORFs) in the virulence of Brucella abortus 2308. Vet. Microbiol. 172, 279–284.
Page, R. and Peti, W. 2016. Toxin-antitoxin systems in bacterial growth arrest and persistence. Nat. Chem. Biol. 12, 208–214.
Palmer, K.L. and Gilmore, M.S. 2010. Multidrug-resistant enterococci lack CRISPR-cas. mBio 1, e00227–10.
Pan, J., Wang, J., Zhou, Z., Yan, Y., Zhang, W., Lu, W., Ping, S., Dai, Q., Yuan, M., Feng, B., et al. 2009. IrrE, a global regulator of extreme radiation resistance in Deinococcus radiodurans, enhances salt tolerance in Escherichia coli and Brassica napus. PLoS ONE 4, e4422.
Patel, S. and Weaver, K.E. 2006. Addiction toxin fst has unique effects on chromosome segregation and cell division in Enterococcus faecalis and Bacillus subtilis. J. Bacteriol. 188, 5374–5384.
Ramisetty, B.C.M. and Santhosh, R.S. 2017. Endoribonuclease type II toxin-antitoxin systems: Functional or selfish? Microbiology 163, 931–939.
Sadeghifard, N., Soheili, S., Sekawi, Z., and Ghafourian, S. 2014. Is the mazEF toxin-antitoxin system responsible for vancomycin resistance in clinical isolates of Enterococcus faecalis? GMS Hyg Infect. Control 9, Doc05.
Schuster, C.F. and Bertram, R. 2013. Toxin-antitoxin systems are ubiquitous and versatile modulators of prokaryotic cell fate. FEMS Microbiol. Lett. 340, 73–85.
Soheili, S., Ghafourian, S., Sekawi, Z., Neela, V.K., Sadeghifard, N., Taherikalani, M., Khosravi, A., Ramli, R., and Hamat, R.A. 2015. The mazEF toxin-antitoxin system as an attractive target in clinical isolates of Enterococcus faecium and Enterococcus faecalis. Drug Des. Devel. Ther. 9, 2553–2561.
Tendolkar, P.M., Baghdayan, A.S., and Shankar, N. 2003. Pathogenic enterococci: New developments in the 21st century. Cell. Mol. Life Sci. 60, 2622–2636.
Tong, J., Lu, X.T., Zhang, J.Y., Sui, Q., Wang, R., Chen, M., and Wei, Y. 2017. Occurrence of antibiotic resistance genes and mobile genetic elements in enterococci and genomic DNA during anaerobic digestion of pharmaceutical waste sludge with different pretreatments. Bioresour. Technol. 235, 316–324.
Vujičić-Žagar, A., Dulermo, R., Le Gorrec, M., Vannier, F., Servant, P., Sommer, S., de Groot, A., and Serre, L. 2009. Crystal structure of the IrrE protein, a central regulator of DNA damage repair in Deinococcaceae. J. Mol. Biol. 386, 704–716.
Wang, X.M., Li, X.S., Wang, Y.B., Wei, F.S., Zhang, S.M., Shang, Y.H., and Du, X.D. 2015. Characterization of a multidrug resistance plasmid from Enterococcus faecium that harbours a mobilized bcrABDR locus. J. Antimicrob. Chemother. 70, 609–611.
Weaver, K.E., Chen, Y., Miiller, E.M., Johnson, J.N., Dangler, A.A., Manias, D.A., Clem, A.M., Schjodt, D.J., and Dunny, G.M. 2017. Examination of Enterococcus faecalis toxin-antitoxin system toxin Fst function utilizing a pheromone-inducible expression vector with tight repression and broad dynamic range. J. Bacteriol. 199, e00065–17.
Weaver, K.E., Reddy, S.G., Brinkman, C.L., Patel, S., Bayles, K.W., and Endres, J.L. 2009. Identification and characterization of a family of toxin-antitoxin systems related to the Enterococcus faecalis plasmid pAD1 par addiction module. Microbiology 155, 2930–2940.
Xie, Y., Wei, Y., Shen, Y., Li, X., Zhou, H., Tai, C., Deng, Z., and Ou, H.Y. 2018. TADB 2.0: an updated database of bacterial type II toxin-antitoxin loci. Nucleic Acids Res. 46, D749–D753.
Yang, Q.E. and Walsh, T.R. 2017. Toxin-antitoxin systems and their role in disseminating and maintaining antimicrobial resistance. FEMS Microbiol. Rev. 41, 343–353.
Yu, G., Ye, C., Fu, Q., Liu, J., Fan, X., Huang, Y., and Zhou, S. 2017. Study on the excision and integration mediated by class 1 integron in Enterococcus faecalis. Microb. Pathog. 110, 678–681.
Zahid, S., Bin-Asif, H., Hasan, K.A., Rehman, M., and Ali, S.A. 2017. Prevalence and genetic profiling of tetracycline resistance (Tet-R) genes and transposable element (Tn916) in environmental Enterococcus species. Microb. Pathog. 111, 252–261.
Zhang, R.G., Kim, Y., Skarina, T., Beasley, S., Laskowski, R., Arrowsmith, C., Edwards, A., Joachimiak, A., and Savchenko, A. 2002. Crystal structure of Thermotoga maritima 0065, a member of the IclR transcriptional factor family. J. Biol. Chem. 277, 19183–19190.
Acknowledgments
We thank Professor Xu Jun of Shanghai Jiao Tong University for providing unstable plasmid pLMO12102 for this study. This work was supported by the Henan Medical Science and Technology Project (LHGJ20190811).
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Li, Z., Shi, C., Gao, S. et al. Characteristic and role of chromosomal type II toxin-antitoxin systems locus in Enterococcus faecalis ATCC29212. J Microbiol. 58, 1027–1036 (2020). https://doi.org/10.1007/s12275-020-0079-3
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DOI: https://doi.org/10.1007/s12275-020-0079-3