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The Complete Genome Sequence of a Bacterial Strain with High Alkalic Xylanase Activity Isolated from the Sludge Near a Papermill

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Abstract

Many organisms secrete xylanase, an import group of proteins hydrolyzing xylan, and thus are able to use xylan as their carbon source. In this study, we sequenced the whole genome of a bacterial strain, YD01, which was isolated from the sludge near the sewage discharge outlet of a papermill and showed high alkalic xylanase activity. Its genome consists of a chromosome and two plasmids. Six rRNA genes, 46 tRNA genes, 3136 CDSs as well as 955 repetitive sequences were predicted. 3046 CDSs were functionally annotated. Phylogenetic analysis on 16S rRNA shows that YD01 is a new species in Microbacterium genus and is taxonomically close to M. jejuense THG-C31T and M. kyungheense THG-C26T. A comparative study on phylogenetic trees of 16S rRNA and xylanase genes suggests that xylanase genes in YD01 may originate from horizontal gene transfer instead of ancestral gene duplication.

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Funding

This work was financially supported by the National Natural Science Foundation of China (Grant Nos. 31770119 and 31800111).

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Authors and Affiliations

  1. School of Biology and Pharmaceutical Engineering, Wuhan Polytechnic University, Wuhan, 430023, China

    Si Chen, Xin Li, Hong-jun Chao, Jing Wu, Jun Liu, Wen-jun Zhu & Da-zhong Yan

  2. Jiangsu Yanghe Brewery Joint-Stock Co., Ltd., Suqian, 223800, Jiangsu, China

    Hao Feng

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  1. Si Chen
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  2. Hao Feng
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Chen, S., Feng, H., Li, X. et al. The Complete Genome Sequence of a Bacterial Strain with High Alkalic Xylanase Activity Isolated from the Sludge Near a Papermill. Curr Microbiol 77, 3945–3952 (2020). https://doi.org/10.1007/s00284-020-02227-5

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