Skip to main content
Log in

Molecular marker aided selection for developing rust resistant genotypes by pyramiding Lr19/Sr25 and Yr15 in wheat (Triticum aestivum L.)

  • Original Paper
  • Published:
Australasian Plant Pathology Aims and scope Submit manuscript

Abstract

The study was aimed to develop rust resistant genotypes with genome of prominent wheat variety HS240 by pyramiding of linked leaf rust and stem rust resistance genes Lr19 and Sr25 with stripe rust resistance gene Yr15. The genotypes FLW13 and FLW20 were used as gene donors for transfer of Yr15 and Lr19/Sr25, respectively. The molecular markers scs265, wmc221, PSY1-E1, and Gb linked to Lr19/Sr25 and barc8 and gwm11 linked to Yr15 were used for foreground selection. Background selection, involving 58 simple sequence repeat (SSR) markers polymorphic between HS240 and FLW20; 72 between HS240 and FLW13 was carried out to recover the genome of HS240 in advanced bulks derived from a cross HS240*2/FLW20//HS240*2/FLW13. The SSR based genome recovery in selected advanced breeding lines, WBM3682 and WBM3684 was 90.8% and 93.3%, respectively. The 35 K SNP array based analysis of genomic regions of HS240 also substantiated the results of genomic recovery estimated through SSR markers. The selected line WBM3682 recorded average grain yield of 25.7q/ha and showed its superiority over parental check HS240 under rainfed situations. This study has led to development of rust resistant wheat carrying genome of HS240.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1
Fig. 2
Fig. 3
Fig. 4

Similar content being viewed by others

References

  • Bariana HS, Brown GN, Bansal UK, Miah H, Stenden GE, Lu M (2007) Breeding triple rust resistant wheat cultivars for Australia using conventional and marker assisted selection technologies. Australian J Agric Res 58:576–587

    Google Scholar 

  • Bhardwaj SC (2012) Wheat rust pathotypes in Indian sub-continent then and now. In: Singh SS, Hanchinal RR, Singh G, Sharma RK, Saharan MS, Sharma I (eds) Wheat-Productivity enhancement under changing climate. Narosa Publishing House Pvt. Ltd., New Delhi, pp 227–238

    Google Scholar 

  • Bhardwaj SC, Singh GP (2019) Tackling wheat rusts through resistance- success, challenges and preparedness. Curr Sci 116:1953–1954

    Google Scholar 

  • Bhardwaj SC, Prashar M, Kumar S, Jain SK, Datta D (2005) Lr19 resistance in wheat becomes susceptible to Puccinia triticina in India. Plant Dis 89:1360

    CAS  PubMed  Google Scholar 

  • Bhardwaj SC, Gangwar OP, Prasad P, Kumar S, Khan H, Gupta N (2019) Physiologic specialization and shift in Puccinia triticina pathotypes on wheat in Indian subcontinent during 2013–2016. Indian Phytopathol 72:23–34

    Google Scholar 

  • Brouwer DJ, St Clair DA (2004) Fine mapping of three quantitative trait loci for late blight resistance in tomato using near isogenic lines (NILs) and sub-NILs. Theor Appl Genet 108:628–638

    CAS  PubMed  Google Scholar 

  • Chatrath R, Tiwari V, Singh G, Tiwari R, Tyagi BS, Gupta A, Kumar R, Singh SK, Kumar L, Sharma AK, Khan H, Kumar S, Singh C, Mishra CN, Venkatesh K, Mamrutha HM, Gupta V, Rinki GK, Verma A, Singh GP (2018) Progress report of AICRP on wheat and barley 2017-18. ICAR-Indian Institute of Wheat and Barley Research, Karnal, p 206

    Google Scholar 

  • Chen XM, Penmanb L, Wanb A, Chang P (2010) Virulence races of Puccinia striiformis f. sp. tritici in 2006 and 2007 and development of wheat stripe rust and distribution, dynamics, and evolutionary relationships of races from 2000-2007 in United States. Can J Plant Pathol 32:315–333

    Google Scholar 

  • Dyck PL, Kerber ER, Marters JW (1990) Transfer of a gene for stem rust resistance from Aegilops caudata to common wheat. Can J Plant Sci 70:931–934

    Google Scholar 

  • Gangwar OP, Prasad P, Khan H, Bhardwaj SC (2015) An update on wheat and barley rusts. Mehtaensis 35:1–29

    Google Scholar 

  • Gangwar OP, Kumar S, Prasad P, Bhardwaj SC, Khan H, Verma H (2016) Virulence pattern and emergence of new pathotypes in Puccinia striiformis f. sp. tritici during 2011-15 in India. Indian Phytopathol 69:178–185

    Google Scholar 

  • Gerechter-Amitai ZK, van Silfhout CH, Grama A, Kleitman F (1989) Yr15- a new gene for resistance to Triticum dicocooides Sel. 25. Euphytica 43:187–190

    Google Scholar 

  • Gupta HS, Kant L (2012) Wheat improvement in Northern Hills of India. Agric Res 1:100–116. https://doi.org/10.1007/s400003-012-012-z

    Article  Google Scholar 

  • Gupta SK, Charpe A, Prabhu KV, Haque QMR (2006) Identification and validation of molecular markers linked to the leaf rust resistance gene Lr19 in wheat. Theor Appl Genet 113:1027–1036

    CAS  PubMed  Google Scholar 

  • Haile JK, Röder MS (2013) Status of genetic research for resistance to Ug99 race of Puccinia graminis f. sp. tritici: a review of current research and implications. African J Agric Res 8:6670–6680

    Google Scholar 

  • Haque A, Shaheen T, Gulzar T, Rahman Ur M, Jalal F, Sattar S, Ehsa B, Iqbal Z, Younas M (2014) Study of rust resistance genes in wheat germplasm with DNA markers. Bioinformation 10:371–377

    PubMed  PubMed Central  Google Scholar 

  • Huerta-Espino J, Singh RP, German S, Mc Callum BD, Park RF, Chen WQ, Bhardwaj SC, Goyeau H (2011) Global status of wheat leaf rust caused by Puccinia triticina. Euphytica 179:143–160. https://doi.org/10.1007/S10681-011-0361-x

    Article  Google Scholar 

  • Khush GS, Brar DS (1992) Overcoming the barriers in hybridization. In: Kalloo G, Chawdhury JB (eds) Distant hybridization of crop plants. Springer, Berlin, pp 47–61

    Google Scholar 

  • Kokhmetova A, Chen X, Rsaliyev S (2010) Identification of Puccinia striiformis f. sp. tritici, characterization of wheat cultivars for, resistance and inheritance of resistance to stripe rust in Kazakhstan wheat cultivars. The Asian and Australian J Plant Sci and Biotechnology 4:64–70

    Google Scholar 

  • Liu S, Yu LX, Singh RP, Jin Y, Sorrells ME, Anderson JA (2010) Diagnostic and co-dominant PCR markers for wheat stem rust resistance genes Sr25 and Sr26. Theor Appl Genet 120:691–697

    CAS  PubMed  Google Scholar 

  • McVey DV, Nazim M, Leonard KJ, Long DL (2004) Patterns of virulence diversity in Puccinia triticina on wheat in Egypt and United States in 1998-2000. Plant Dis 88:271–279

    CAS  PubMed  Google Scholar 

  • Murphy LR, Santra D, Kidwell K, Yan G, Chen X, Campbell KG (2009) Linkage maps of wheat stripe rust resistance genes Yr5 and Yr15 for use in marker assisted selection. Crop Sci 49:1786–1790

    CAS  Google Scholar 

  • New Comb M, Olivera PD, Rouse MN, Szabo LJ, Johnson J, Gale S, Luster DG, Wanyera R, Macharia G, Bhawani S, Hodson D, Patpour M, Movmoller MS, Fetch TG, Jin Y (2016) Kenyan isolates of Puccinia graminis f. sp. tritici from 2008-2014: virulence to SrTmp in Ug99 race group and implications for breeding programs. Phytopathology 106:729–736

    CAS  Google Scholar 

  • Niu YC, Qiao Q, Wu LR (2000) Postulation of resistance genes to stripe rust in commercial wheat cultivars from Henan, Shandong and Anhui provinces. Acta Phytopathol Sin 30:122–128

    Google Scholar 

  • Pal D, Bhardwaj SC, Sharma P, Sharma D, Kumari S, Patial M, Prabhu KV, Kumar J (2015) Molecular marker assisted back cross breeding for effective transfer of Lr19 in wheat (Triticum aestivum L.). Indian J Genet 75:253–255

    Google Scholar 

  • Pal D, Bhardwaj SC, Khan H, Patial M (2018) HS628: a potential genetic stock for resistance to new virulent pathotypes of black, brown and yellow rusts of wheat (Triticum aestivum L.). Wheat and Barley Research 10:60–63. https://doi.org/10.25174/2249-4065/2018/76849

    Article  Google Scholar 

  • Panse VG, Sukhatme PV (1995) Statistical methods for agricultural workers. ICAR, New Delhi, pp 1–359

    Google Scholar 

  • Prasad P, Gangwar OP, Bhardwaj SC, Kumar S, Khan H, Savadi S (2018) An update on wheat and barley rusts. Mehtaensis 38:1–30

    Google Scholar 

  • Prashar M, Bhardwaj SC, Jain SK, Datta D (2007) Pathotypic evolution in Puccinia striiformis in India during 1995–2004. Australian J Agric Res 58:602–604

    Google Scholar 

  • Prins R, Groenewaid JZ, Marais GF, Snape JW, Koebner RMD (2001) AFLP and STS tagging of Lr19, a gene conferring resistance to leaf rust in wheat. Theor Appl Genet 103:618–624

    CAS  Google Scholar 

  • Randhawa M, Bansal U, Valarik M, Klocova B, Dolezel J, Bariana H (2014) Molecular mapping of stripe rust resistance gene Yr51 in chromosome 4AL of wheat. Theor Appl Genet 127:317–324

    CAS  PubMed  Google Scholar 

  • Rattu AR, Ahmad I, Fayyaz M, Akhtar MA, Ulhaque I, Zakri M, Afzal SN (2009) Virulence analysis of Puccinia triticina cause of leaf rust of wheat. Pak J Bot 41:1957–1964

    Google Scholar 

  • Riar AK, Kaur S, Dhaliwal HS, Singh K, Chhuneja P (2012) Introgression of a leaf rust resistance gene from Aegilops caudata to bread wheat. J Genet 9:155–161

    Google Scholar 

  • Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier MH, Leroy P, Ganal MW (1998) A microsatellite map of wheat. Genetics 149:2007–2023

    PubMed  PubMed Central  Google Scholar 

  • Rogers SO, Bendich AJ (1985) Extraction of DNA from milligram amounts of fresh, herbarium and mummified plant tissues. Plant Mol Biol 5:69–76

    CAS  PubMed  Google Scholar 

  • Shamanin VP, Morgounov AI, Petukhovskiy SL, Likhenko IE, Levshunov MA, Salina EA, Potostkaya IV, Trushenko AY (2015) Spring bread wheat breeding for resistance to stem rust in Western Siberia. Osmk State Aric University, Omsk 152p

    Google Scholar 

  • Singh RP, Hodson DP, Huerta-Espino J, Jin Y, Njau P (2008) Will stem rust destroy the world’s wheat crop? Adv Agron 98:271–309

    CAS  Google Scholar 

  • Stakman EC, Steward DM, Loegering WQ (1962) Identification of physiologic races of Puccinia graminis var. tritici. USDA-ARS Bull. E-167, Washington DC, USDA eds, pp 53

  • Tomar SMS, Menon MK (2001) Genes for disease resistance in wheat. Indian Agricultural Research Institute, New Delhi, p 152

    Google Scholar 

  • Tomar SMS, Singh Sanjay K, Sivasamy M, Vinod (2014) Wheat rusts in India: resistance breeding and gene deployment – a review. Indian J Genet 74:129–156

    CAS  Google Scholar 

  • Vishwakarma MK, Mishra VK, Gupta PK, Yadav PS, Kumar H, Joshi AK (2014) Introgression of the high grain protein gene Gpc-B1 in an elite wheat variety of indo-Gangetic Plains through marker assisted backcross breeding. Curr Plant Biol 1:60–67

    Google Scholar 

  • Yadav PS, Mishra VK, Arun B, Chand R, Vishwakarma MK, Vasistha NK, Mishra AN, Kalappanavar IK, Joshi AK (2015) Enhanced resistance in wheat against stem rust achieved by marker assisted backcrossing involving three independent Sr genes. Curr Plant Biol 2:25–33

    Google Scholar 

  • Yaniv E, Raat D, Ronin Y, Korol AB, Grama A, Bariana H, Dubcovsky J, Schulman AH (2015) Evaluation of marker-assisted selection for the stripe rust resistance gene Yr15, introgressed from wild emmer wheat. Mol Breed 35:43

    PubMed  PubMed Central  Google Scholar 

  • Yessenbekova G, Kokhmetova A, Kampitova G, Jevtic R (2016) Sources and donors for soft wheat selection by resistance to yellow rust. Biosciences Biotechnology Research Asia 13:693–700

    Google Scholar 

  • Yu LX, Liu S, Anderson JA, Singh RP, Jin Y, Dubcovsky J, Brown-Guidera G, Bhavani S, Morgounov A, He Z, Huerta-Espino J, Sorrells ME (2010) Haplotype diversity of stem rust resistance loci in uncharacterized wheat lines. Mol Breed 26:667–680

    Google Scholar 

  • Zhang W, Dubcovsky J (2008) Association between allelic variation at the phytotene synthase1 gene and yellow pigment content in the wheat grain. Theor Appl Genet 116:635–645

    CAS  PubMed  Google Scholar 

Download references

Acknowledgements

All authors thank the DBT, Govt. of India for financial support through project. Authors are thankful to Ms. Ankita, NABI, Mohali for her help in this study.

Author information

Authors and Affiliations

Authors

Contributions

DP, SCB and KVP conceived the research idea; SCB did the host pathogen interaction tests; PS, DS, HK, SK and MP conducted the research work; SKJ generated genome recovery data; H and DC generated SNP genotyping data; DP, HPB wrote the manuscript.

Corresponding author

Correspondence to D. Pal.

Electronic supplementary material

ESM 1

(DOCX 22.7 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Pal, D., Bhardwaj, S.C., Sharma, P. et al. Molecular marker aided selection for developing rust resistant genotypes by pyramiding Lr19/Sr25 and Yr15 in wheat (Triticum aestivum L.). Australasian Plant Pathol. 49, 631–640 (2020). https://doi.org/10.1007/s13313-020-00738-0

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s13313-020-00738-0

Keywords

Navigation